mRNA_H-paniculata_contig607.13756.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig607.13756.1
Unique NamemRNA_H-paniculata_contig607.13756.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig607.13756.1 vs. uniprot
Match: D7G1J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J3_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 4.630e-5
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  193 MGPNSGGGKRSKTDATNKSSARGRFSNCAFPGNKP-KRGG 309
            MGPNSGGGKR+K DA+  SSARGRFS  AFP NK  K+GG
Sbjct:   20 MGPNSGGGKRNKVDASKVSSARGRFSKSAFPVNKKTKKGG 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig607.13756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1J3_ECTSI4.630e-572.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig607contigH-paniculata_contig607:26114..31940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size410
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig607.13756.1prot_H-paniculata_contig607.13756.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig607 29756..31940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.594633-UTR-H-paniculata_contig607:26113..262101622930677.594633-UTR-H-paniculata_contig607:26113..26210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 26114..26210 +
1691481402.1261318-UTR-H-paniculata_contig607:26113..262101691481402.1261318-UTR-H-paniculata_contig607:26113..26210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 26114..26210 +
1622930677.6161885-UTR-H-paniculata_contig607:29660..297551622930677.6161885-UTR-H-paniculata_contig607:29660..29755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 29661..29755 +
1691481402.1355941-UTR-H-paniculata_contig607:29660..297551691481402.1355941-UTR-H-paniculata_contig607:29660..29755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 29661..29755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.628838-CDS-H-paniculata_contig607:29755..298571622930677.628838-CDS-H-paniculata_contig607:29755..29857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 29756..29857 +
1691481402.1444848-CDS-H-paniculata_contig607:29755..298571691481402.1444848-CDS-H-paniculata_contig607:29755..29857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 29756..29857 +
1622930677.644644-CDS-H-paniculata_contig607:31826..319401622930677.644644-CDS-H-paniculata_contig607:31826..31940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 31827..31940 +
1691481402.1546094-CDS-H-paniculata_contig607:31826..319401691481402.1546094-CDS-H-paniculata_contig607:31826..31940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 31827..31940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig607.13756.1

>prot_H-paniculata_contig607.13756.1 ID=prot_H-paniculata_contig607.13756.1|Name=mRNA_H-paniculata_contig607.13756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MGPNSGGGKRSKTDATNKSSARGRFSNCAFPGNKPKRGGKAGSKGAGRGA
GAGGTKGADSGGRGGGTTGNGG
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mRNA from alignment at H-paniculata_contig607:26114..31940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig607.13756.1 ID=mRNA_H-paniculata_contig607.13756.1|Name=mRNA_H-paniculata_contig607.13756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5827bp|location=Sequence derived from alignment at H-paniculata_contig607:26114..31940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCTCGCGGGGAAATAACGCACAAATCAGGAGGAAAAGGCAGCACTAGT
GCTGGTACGACGGACTGTACTGTCTGTCTTCTGGAGTATGAATTGAGGTA
AGAGGCCACCTGGCTCGCGATGAAAATATCTAACTCTTCCCCTGACCGTT
GCTCAGGCTGTGCTCGTATGTACTAAGCATCTGCCCAAACGATATCTCAA
CATGCAGGATAGATACTGCTGTAATTTGTATGGTATGGTAGATTTTGTAC
AACATACCCAGAGGCCCCTCAATGGAAGCCAGCTGTGGCGACAGATAGCA
CAATCGTATATTCTTTATGACTTCACAGGACACGGCACACCATAGGGCGC
AAGGGGCGGTGGAGCTGTCGCTAAGGAACGAGGATTTGCCAACTTTTGTG
GATACGGACATCATCATAGACAGTAAATATAATACAACGTCTAGGAACAG
TACAGTGGTACGTACCAGCAGCCCGCTGTCTCTGTAAACAGTAACCTCTT
GTATTCCGGGTCAAGTTCACCCTAATTAAATACCAATTAAGTGCACGGCG
CCAAATTTAGCTCAACTTCTTGTGCCAAATTTCTTGGAACAAAAATATGC
CTCATAATTTCCCTAAATACGTTGTAGTGATGGATTCCTCCATACAGTTG
TACAATATCATGCTTGAAGCTGACCACAACTGCCTGTTTGCTAATTGAAC
AGTAATGGGGGGTAACGGCGACGCAGCGAAAATATAGTTGGATGCAGTAT
TTTAAAATGTTCCGAAAAACAACAACGACCACCACCACTCAATGATATCC
TAAATACCGTACAGGCAATAGCGTTTCGGCAAAGATAGAGATGGGCCCAT
GATGTGACTCAGGGTCAGGTGCTGGCTGTGATTGGTGATATTTTCCGCTA
ATTTTTACACTTGGCGGGGATCCTGAAAAGAAGCCTCAGGGTAGCGAGCC
AGGAAATGAAATATTTCCAGGAGTGTTTGTTGCGGCTCAGACCAAATCTC
ATGGGATAATTTTTGGGCATTTTTGAAAACGAGAGATGGGCCATTTCTCA
TCTCACATCGAAAAACCCACCTTATGGCGTAAAAAATGGCCCATTTCCCA
CGAGCTCAAAAAACATTTCCCATCTGACCTCCCAATCTCGTGAGAAATGG
AGCCCAAATATCACAATTTTTCAGAGCAATGGGATTTGGCGTTGTATAGA
ACGCTAGGCTTTATTTGCACTTTTTGCCGCGGAGAGTCCAACCGACAACC
GACATTACAGTACAGCACAGTACAGCTCAGTACAACCTATGCAACGAAGG
GCACACACACACACACACACACACACACACACACACACACACACACACCA
CGGACCCGTGCTAGTGCTGCGACGGAGGCGAAAGGTCCGCGGTGCCTCGT
TTTGTGCACACGTGTCGATGCAAGACGGATCCTTGCAGTTGGGACATGTT
ATTACGCAGGTGTTTGTTGCAGTGACAGCACTCCCAATCATGGTAGTTGT
GGTGCGAACGGCTTGTGCCGAGATATGGTCTCGCCAGGGGTACAGTAACG
TGTGTTGTGTGTTGTAGTTTTTAAACTTGAACTGCATGCATGCCAACTCT
TCTGTGTAATATCCAGTTACCATTTCTTATTGGATGGCCTCTTCGACGGT
ATGCTGGAAATGTTGGAATGGAGGCGTGATTGCCCAAAAATCATAAAAGC
CATTTCTCATTTTCAACGCCATACGATACGGTCTCACGCTCAGGAAATGC
GAACCGCAACACGACAACCTGGCACATGCACAGCGCACACAGACAAATAC
ACATCCAAATAAACATACACTGACCACAACGAAGCTGTTGTTTCACTACG
GGCCACAAATCCATCTCCCGAAAGCACTCGGGGACATGGATGATGGTCAG
ATGCCCGCGGTTAGGTCTAGGAAGGAGTTTTCAATGCTCGGGCGACGGCA
CGCAAAGGAAGAGTGTTTGCTTTGAAATTCAGATGTGTCGTTTCGCTCAC
TAACCGGCATACCTCGCTCGCTCTCCACCAAACCAAAGGGATAAGACGGG
CCGAAATGAGAAAGTTCCTCAAATATAAGGCTCCGATAGATAGTCGCTGC
GCTACCGTATACAGTACGGTATAGTACGGTACGATGTTGAGGGACGATGG
CATGCAATGGCCTAATTTTGCCTTAGCAACTGACTGTACTGTGACGACCA
TTTTCCGGTTGACTTGTATTCAGAAACCCTTACATATACTACTGTCTGTA
GTTGCATGGCTACCGTACGGGTGGGCCTTGTGCAAGCTACCCGAGGTCAG
TGGATGCTATTGACTCTCCAGCTTGTGTCTGTGTGTTGGTGAAGTAAAAA
ATGCTACTTGCATACGACAAAAAAAAAAGAAACGGTTTAGAACGGTCTGT
GGAACAAAACAATATCAACAAGAGTTTGCCACTATTTGAGATGTTAGTCG
TACTGCAGCGCCATCATGTGCATGGCGGCATGCATGCCAGGGAGTAGAGC
AGGTTAACCAACCGTATACTGCAGTCTCATGTCTCCACGGTGCAGCAAGA
CTGGGTGACGCTGGAATACAGTACAAGTCCATATGCCCCAGCCGTTGAGG
CTCTTTCATACTGGTATATGACATACTCCTCTACGGTGCAACGGGGGCTT
GGTTGGTACCTCTTCACCCGAATTGCCAGCCACGTCATCGTGGGTACCGC
CGCGCGTAAATCCTGAGAATTTCATTAGAATTTGGGCAATTATGACTTAG
CTTTTCCCCTGACCCTCAGTTAAACCCCGAGTCCAAAAACAATGTTTACC
GAAACTCTAGTATGTAACTAGTACGAGGAGGTTATACCCCAGTTGTTTCA
CAACAACTGTCAATCATGGTTAGTTGTTTTGGGTTGTTAGGGTGGAAACG
CGGCCCCGACTAAGCTGCTACACTCGTCCCAAACTCGACCCCCGAACCTA
ACTGTGTAACCCAGCATCCTTCTCGGCGTCAACTCGCAGCCCGGGTAGCG
ATGGAATACGCCCTAACGATGCGCCGTTCTGTGGCGCAACGACCGACATG
CAAGGTCATGGCGGGGCTGCCAGTCTTACGACAGTAAAACCACCTACTGC
ACTCTAATCTTACATTTATGTCTGTATTTTTGTCGATCTACTGGAGAAAA
ACTATCGTGAGTGTTGGATATATCATATTAAAGAATGGAAATCAATACGA
GCGACCACCGAAAACTCGATTCATGATCTTAGCGTGCCGGGGAAAATATG
AGTAATTCCTCTCAAATCAGGTCTTCGAAGTATATTTTTTTATAAAAAGT
TGTACATCCTGGTATAAAAAAGATGGTTAGAAAACAAATTAGAGTGAAAC
AATTGGATTGACCGACCAGAATTCATACAATAATTATCGGTATAAAGCGT
GTACAAAATATGGCTCTTTGCTCGCAAAATGCGACATGCCCTCTCTCTCT
CTCTCTCTCTCGGGTGTCATTACCTATTTCGAAGGAGTATTTTATTTGAT
CTTTCCTTTTCAATCCCATCAAAACCCCAAAAATTTACACGGTACAGCGG
AAAAGACACCGGGACTTGTGATCGCGGGATCAGCAGCGTCAGCAACAGCA
ACAGCAACAGCAGCAGCAGCAGCAGCAGCACTAGCATCAACCATGGGCCC
GAACTCTGGCGGCGGCAAACGCAGCAAGACCGACGCGACGAATAAATCTT
CCGCCCGTGGACGTTTCAGCAACTGCGCCTTCCCTGGAAACAAGGTACTG
TACTATATTTATTAGAATGAAAAGCGTGTGATATAGTCAGGATAGGAAGT
TGACCTGCAAGTATCCTCTAACCAATTTTACAGTTTCTGGACTCACCTAT
AATGTAGTATAGTGTGTTATGGTATAGTGTAGTATGATACAATACAACAG
TGTCTCTTCCCCCTGATGGGAAAACAGATGGTAAGGTCAGGGTCCATTCT
GAACTTGGTTTGTTCGTTATTCGTTTTTCTCCTTTTTTTTTTCTCTTTTT
TTTGTTATTGTCGAATTTTGTGCAATTTCGAAATTTTGAAAAGAGCAGCT
TTTTTTTGCCTACAGTCTTTCCTTACTCCTATTTCAAGTTATATTTTCCT
CCGATTCTTCCGGCCTCGTCAGCATGTTGTCGAGACAAGGGGCAAAAAGA
GAGGAGAGCAAAAATAGAAAAATGGATAGAAGAGGAAATACACACAAGGT
TTAGAACGGCTCTAGGACTTGACAACACAAGCATTCCTTGGAGGGTGGAT
CTAAGCCAACACTATGTACTAGTTGTAGTCTGTAGGGTTTCATCCACATT
GTCTTCCTGTTGTAGTCCTCATGATATGTTCTAAGTTTGCTGATGGGTGC
AGTCTAATAGTAGCGTCACGGCTATCTATGCCCGTACACTTCATGCTTGT
TCTCGGTCCATTGGCTTGCAACGCTCGTATGAAGATTCCTTTGTCAGTAG
TTATTTGGATGCAGATTAACGTAAGATATTGATCCGCAACGATGAACGCG
TTACCACATCATTTCAAAAGTAGGATAGCTGGTGTGAGTGTAGGACATGT
TACAGAATGTATCAGCAAGTCCGTTAAATAGAGCAAAGCAGTATAGATGG
AGCAAGTCAGCTAAATAGAGCAAAGCAGTATAGATGGCGACCCCAGTCAA
AAATAAACTAGTTGATTCAGAGACTGCTAAAGGCCGTTCATTGTGAGCGC
CAGGAAACGTTGCTGTCCTCGAATATCCATGGTTGAGTTGACACGGTGTA
TTTTAGTAGTGTATATTGTCGCTTCTTTTTTCGCCTGCCCGTGCCCAAAC
AACTCGTTTTTGTTTATTAATCTTGAAATCGTGCATAGGCCCTGAAAAGA
CTCGGAAAAGCATCGCGGTACGATCTGAGAGGCCCACTGACGCGCGTCAG
ACCCGCAACGCTACCCAATGCGGTCTCTAGAGCGAGCGCCAAATGGTGGC
AATATGCAGAAAACGCAGCAGATTTTACGTCTAAAGACAACGTTTATTTT
TCGTCAAATCGGCTGTTTCGTTGTACGATGACCCAAATGTTGCAGGTTGG
AACCCCGCTGCATGCATTCGTATGAATCAACAACAATGTATCACTCCCCT
GACCTCGTGAGGGCAATTTAAAAATCAGTCGATTTGTCGTCCCTCTCATC
AAATAATCAATGCCCTATATATGAAAAAGAGAGAGAAAATGTAAATGAGA
GAATTAAGGAAAATCGAAGGATGCAAGAGAGAGAGAGAGAGAGAGCGGTG
TTTGAATTATCCTCGGATTACAAAAAGTAGGCTAAAGCGGTTTTAGGAGA
TAGAAATTGGCCTCAACAGGCGAGGGTTGAGGTATAGATAGGGTAGGGCA
AAAACTGTTTTGAGCCACATTCGGCATCGTAATAAAGAGCGATTGATTAG
CCATCATCAGAAATCGCTCTGATAGGAAAAACAAAGCCTCGTCTTCCCGG
GGACAACACGCGTGGTCAACGATCTAGTAACGATTATATGCCGTGCAAAA
CATGAGAATTTTTGAGACACATTTGGCAAGGTAGGAAATAGCGATTGGCC
ATGGGAAATCGCCCTGATAGGAACAAAGCTCCGTCCTCTCAAGGACGCGT
GGTTCAAATGGTCTAACAATAACAACTGCGGCGTCCACAACTTGAGTACC
CCCCCTCCCTCGTCCCTCTCTCCCAATATTTCTGCCTTATCGCCACACAA
ACGACGTAAAAAGCCTAAGCGCGGGGGGAAAGCTGGGAGTAAAGGAGCCG
GCCGCGGGGCCGGCGCAGGCGGTACAAAAGGTGCCGATTCAGGGGGCCGA
GGCGGTGGTACCACTGGAAACGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig607:26114..31940+

>mRNA_H-paniculata_contig607.13756.1 ID=mRNA_H-paniculata_contig607.13756.1|Name=mRNA_H-paniculata_contig607.13756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig607:26114..31940+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCCGAACTCTGGCGGCGGCAAACGCAGCAAGACCGACGCGACGAA
TAAATCTTCCGCCCGTGGACGTTTCAGCAACTGCGCCTTCCCTGGAAACA
AGATGGGCCCGAACTCTGGCGGCGGCAAACGCAGCAAGACCGACGCGACG
AATAAATCTTCCGCCCGTGGACGTTTCAGCAACTGCGCCTTCCCTGGAAA
CAAGCCTAAGCGCGGGGGGAAAGCTGGGAGTAAAGGAGCCGGCCGCGGGG
CCGGCGCAGGCGGTACAAAAGGTGCCGATTCAGGGGGCCGAGGCGGTGGT
ACCACTGGAAACGGGGGGCCTAAGCGCGGGGGGAAAGCTGGGAGTAAAGG
AGCCGGCCGCGGGGCCGGCGCAGGCGGTACAAAAGGTGCCGATTCAGGGG
GCCGAGGCGGTGGTACCACTGGAAACGGGGGG
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