prot_H-paniculata_contig6068.13750.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig6068.13750.1
Unique Name	prot_H-paniculata_contig6068.13750.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	155

Homology

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A355BL19_9FIRM (DNA-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A355BL19_9FIRM)

HSP 1 Score: 102 bits (255), Expect = 9.380e-26
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSVK 148
            MKK  +V+ +AEK+GLNK Q+EAAL AF+ ++ +AL AG KV L GFG+FEAR RA R GRNP TGE + I  + VPAF A K LKD+VK
Sbjct:    1 MKKADLVSRIAEKSGLNKKQAEAALDAFVASVQEALQAGEKVQLVGFGTFEARDRAARTGRNPGTGEEIQIPASRVPAFKAGKVLKDAVK 90

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.120e-25
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSVK 148
            MKK   VA ++ K+GL+KTQ++AA+ AF++T+ +A+  G KV+L GFG+FE+R RA RQGRNP+TGE L I  +  PAF+AAKA KD VK
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 90

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A1M6PI97_9FIRM (Bacterial nucleoid protein Hbs n=2 Tax=Anaerobranca TaxID=42447 RepID=A0A1M6PI97_9FIRM)

HSP 1 Score: 100 bits (249), Expect = 7.590e-25
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSVK 148
            M KT+++  +AEK+GL K  SE A+ A LETI DA+ AG KV L GFG+FEAR RA R+GRNP TGE + I  T VPAF A KA KD VK
Sbjct:    1 MNKTELIQSVAEKSGLTKKDSEKAVNAVLETIMDAVSAGDKVQLIGFGTFEARERAAREGRNPSTGEVISIPATKVPAFKAGKAFKDMVK 90

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A7G9W854_9FIRM (HU family DNA-binding protein n=1 Tax=Alkalicella caledoniensis TaxID=2731377 RepID=A0A7G9W854_9FIRM)

HSP 1 Score: 99.0 bits (245), Expect = 3.060e-24
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSVK 148
            M KT+++  +AEK+GL K  SE A+ A LETI +A+ A  KV L GFG+FEAR RA R+GRNP TGE + I  T VPAF A KA KDSVK
Sbjct:    1 MNKTELIQSVAEKSGLTKKDSEKAVTAILETIIEAVSADEKVQLIGFGTFEARERAAREGRNPSTGEVINIAATKVPAFKAGKAFKDSVK 90

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A7S2URZ8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URZ8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.330e-24
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 0

Query:   57 ETMKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSV 147
            E  +K   V  +AEKTGL+KT SEAAL A LETIS+AL  G KV++ GFGSF+  +RA R+GRNP+TGE + I +++ P+FTA K LKD +
Sbjct:   69 EVFRKGDFVTSIAEKTGLSKTDSEAALAAVLETISEALVNGFKVSMLGFGSFKVTYRAARKGRNPQTGEEIQISESYAPSFTAGKGLKDKL 159

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A254NG98_9BACL (Integration host factor subunit alpha n=6 Tax=Paenibacillaceae TaxID=186822 RepID=A0A254NG98_9BACL)

HSP 1 Score: 97.8 bits (242), Expect = 8.690e-24
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSVK 148
            M KT+++  ++EK+G+ K + EA L  F++ +S+AL AG KV L GFG+FE R RAGR GRNP+TGEP+ I ++ VPAF A   LKD+VK
Sbjct:    1 MNKTELINSISEKSGVGKKEVEAVLNGFMDGVSEALAAGDKVQLIGFGTFETRKRAGRTGRNPQTGEPITIPESSVPAFKAGNKLKDAVK 90

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: R5N145_9FIRM (Bacterial nucleoid protein Hbs n=2 Tax=Eubacteriales TaxID=186802 RepID=R5N145_9FIRM)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-23
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSV 147
            M KT+++A +AEKT L+K  ++AA+ A L  I+DAL AG K+ L GFG+FE R RA +QGRNPRTGE + +  + VPAF A KALKD+V
Sbjct:    1 MNKTELIAAVAEKTDLSKKDADAAVSAVLGAITDALKAGDKIQLVGFGTFEVRNRAAKQGRNPRTGETMTVPASKVPAFKAGKALKDAV 89

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A2S9VEL1_9ALTE (DNA-binding protein HU n=1 Tax=Alteromonas alba TaxID=2079529 RepID=A0A2S9VEL1_9ALTE)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-23
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSVKA 149
            M KTQ++  +A K  L+K  +  AL AF +T+++ L AGSKV+LPGFG+FE R R  RQGRNP+TGEPL I  +  PAF A K LKDSV A
Sbjct:    1 MNKTQLIDAIAGKADLSKAAAARALDAFTDTVTETLAAGSKVSLPGFGNFEVRERGERQGRNPKTGEPLTIAASKSPAFKAGKTLKDSVNA 91

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A4R3Z7K3_9FIRM (DNA-binding protein HU-beta n=3 Tax=Erysipelotrichaceae TaxID=128827 RepID=A0A4R3Z7K3_9FIRM)

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-23
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSV 147
            M KT++V ++AE  GL KTQ+EAA+ AF+ETI+D L AG K+ L GFG+FE R R  R+GRNPRTGE + I  +  PAF A+ ALK+ +
Sbjct:    1 MNKTELVEKVAESAGLTKTQAEAAINAFVETITDGLKAGDKITLKGFGTFEVRQREAREGRNPRTGETMTIAASKAPAFKASSALKNVI 89

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BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Match: A0A6L5GQ70_9FIRM (HU family DNA-binding protein n=3 Tax=Eubacteriaceae TaxID=186806 RepID=A0A6L5GQ70_9FIRM)

HSP 1 Score: 97.1 bits (240), Expect = 1.740e-23
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 0

Query:   59 MKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKVNLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSV 147
            M KTQ+VA ++EK+GL+K +SE AL AF E+I +AL  G KV+L GFG+F+ R RA RQG NPRT EP+ I+ ++ PAF A KA KD++
Sbjct:    1 MNKTQLVASISEKSGLSKKESEKALSAFTESIVEALQKGDKVSLVGFGTFDVRHRAARQGLNPRTKEPIEIKASNAPAFKAGKAFKDAL 89

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig6068.13750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A355BL19_9FIRM	9.380e-26	60.00	DNA-binding protein n=1 Tax=Firmicutes bacterium T...	[more]
A0A835Z9S8_9STRA	4.120e-25	56.67	DNA-binding protein HU n=1 Tax=Tribonema minus Tax...	[more]
A0A1M6PI97_9FIRM	7.590e-25	60.00	Bacterial nucleoid protein Hbs n=2 Tax=Anaerobranc...	[more]
A0A7G9W854_9FIRM	3.060e-24	58.89	HU family DNA-binding protein n=1 Tax=Alkalicella ...	[more]
A0A7S2URZ8_9STRA	8.330e-24	56.04	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A254NG98_9BACL	8.690e-24	53.33	Integration host factor subunit alpha n=6 Tax=Paen...	[more]
R5N145_9FIRM	1.270e-23	56.18	Bacterial nucleoid protein Hbs n=2 Tax=Eubacterial...	[more]
A0A2S9VEL1_9ALTE	1.270e-23	56.04	DNA-binding protein HU n=1 Tax=Alteromonas alba Ta...	[more]
A0A4R3Z7K3_9FIRM	1.300e-23	55.06	DNA-binding protein HU-beta n=3 Tax=Erysipelotrich...	[more]
A0A6L5GQ70_9FIRM	1.740e-23	56.18	HU family DNA-binding protein n=3 Tax=Eubacteriace...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000119	Histone-like DNA-binding protein	PRINTS	PR01727	DNABINDINGHU	coord: 132..146 score: 46.24 coord: 98..113 score: 46.62 coord: 116..129 score: 57.8
IPR000119	Histone-like DNA-binding protein	SMART	SM00411	bhlneu	coord: 59..148 e-value: 8.9E-36 score: 134.9
IPR000119	Histone-like DNA-binding protein	PFAM	PF00216	Bac_DNA_binding	coord: 59..148 e-value: 2.0E-28 score: 98.4
IPR000119	Histone-like DNA-binding protein	PANTHER	PTHR33175	FAMILY NOT NAMED	coord: 45..151
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	GENE3D	4.10.520.10		coord: 59..154 e-value: 4.4E-31 score: 109.0
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	SUPERFAMILY	47729	IHF-like DNA-binding proteins	coord: 59..148
IPR020816	Histone-like DNA-binding protein, conserved site	PROSITE	PS00045	HISTONE_LIKE	coord: 104..123
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..154
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.723
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig6068	contig	H-paniculata_contig6068:4763..12173 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig6068.13750.1	mRNA_H-paniculata_contig6068.13750.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig6068 4692..12306 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig6068.13750.1 ID=prot_H-paniculata_contig6068.13750.1|Name=mRNA_H-paniculata_contig6068.13750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MKNILSIIVAAIFAQYGHAFIVTPGVVGRPSCNTLARRGVEPLCAATKEK
AVSTEQETMKKTQIVAEMAEKTGLNKTQSEAALVAFLETISDALGAGSKV
NLPGFGSFEARFRAGRQGRNPRTGEPLMIEDTHVPAFTAAKALKDSVKAS
NADK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000119	Hist_DNA-bd
IPR010992	IHF-like_DNA-bd_dom_sf
IPR020816	Histone-like_DNA-bd_CS