mRNA_H-paniculata_contig12169.1375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 299 bits (766), Expect = 5.230e-96 Identity = 143/241 (59.34%), Postives = 185/241 (76.76%), Query Frame = 2 Query: 203 TATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFD-SNCGFLIESLCTEGI-EGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYA--NEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913 T+T+AL+V TP+ TVV+ Y V W GAS+D RFE+DL YCGSYS+CF+ + CGF + ++C EG GC D V PEPLG RS+ GYR+RIAE+G DT RCSDDFYLM+S D P VGE+GGP+IEV++PT D++AI+GE YTVEFDYDNGFG +GRFKIDLY A +G GDCG W++S+CDKPDVGC D+ G+Y++V+P ++ GM++IRVGLFGDD++Y+CS FEV+ Sbjct: 21 TSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVV 259
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 290 bits (742), Expect = 1.450e-92 Identity = 139/254 (54.72%), Postives = 184/254 (72.44%), Query Frame = 2 Query: 203 TATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDS--NCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFE-------VLPLGEGIWL 937 T+T+ALRV TP+ +V + Y V W GA +D RFEVDL YCGSYSFCF +CGF I ++C E + C + D V PEP+ S+NGYRVRI+E+G D RCS+DFYL+AS DV GE GGP++EV++P +++A++GE YTVEFDYDNGFG +GRFKIDLY A EG+GDCG W++S+CDKPD+GC+D+ G+YD+V+P ++ GM++IRVGLFGDDS+Y+CS FE VL G G+W+ Sbjct: 20 TSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGT--DNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA-EGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLWM 270
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 284 bits (727), Expect = 1.490e-90 Identity = 144/260 (55.38%), Postives = 190/260 (73.08%), Query Frame = 2 Query: 167 VTIVAAMTSML---TTATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDS--NCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVLPLGEGI 931 V +AA+T ML T T+ALRV TP+ TVV+D Y V W GAS D RFE+DL YCGSYSFCF+ CGF + +LC EG + C D V +PEP+ S++GYRVRI ++G +T RCSD+FYLM+S D ++ GP++EV++P+ ++A++G YTVEFDYDNGFG+ GRFKIDLY+A EG GDCG W+SS+CDKPDVGC DT G+YDIV+P+ ++ GM++IRVGLFGDDSV++CS FEV+P +G+ Sbjct: 5 VAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGT--ETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHA-EGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 263 bits (671), Expect = 6.880e-82 Identity = 129/236 (54.66%), Postives = 167/236 (70.76%), Query Frame = 2 Query: 206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913 A AL V TP+EG VVA YTVEWTG S++R+E+DL YCGS C + CG + +LC G +GC D +G YD+ MPEP+ S +GY+VR+A++ D+ CSD+FYLMA + P G+ GGP + V SP+ A +GEEYTVEFDYDNG GS+VGRF IDLY A G GDCG ++ ++CDKP +GCKD+ G+YD+ +P+ A+AGM+ IRVG F DDSVY CSDEFE+L Sbjct: 4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAT-GSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 259 bits (661), Expect = 1.680e-80 Identity = 128/235 (54.47%), Postives = 168/235 (71.49%), Query Frame = 2 Query: 206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEV 910 A AL+V+TPS+G+TV+AD TYTVEWTG SSD+RFE+DL YCGS C + +CG + +LC G +GC D +G YD+ MPEP+ S +GY+VR+ +I D CSD+FYL+AS + P VG+E GP++EV SP +A + EYTVEFDYDNG GS+V RF IDLY A +G GDCG ++ SICDKP +GCKD+ G+YD+ +P AG ++IRV F DDS+YSCS F + Sbjct: 16 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRA-DGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 254 bits (649), Expect = 7.930e-79 Identity = 124/233 (53.22%), Postives = 162/233 (69.53%), Query Frame = 2 Query: 215 ALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913 AL V TP+ G VV+ YTVEW+G S+ RFE+DL YC S C + CG + +LC G +GC D +G YD+ MPEP+ S +GY+VR+A++ D+ CSD+FYLMA D P + GGP + V SP+ A +GEEYTVEFDYDNG GS+VGRF IDLY A G GDCG ++ ++CDKP +GCKD+ G+YD+ +P+ A+AGM+ IRVG F D+SVY CSDEFE+L Sbjct: 20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAAT-GSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 246 bits (627), Expect = 1.480e-75 Identity = 124/236 (52.54%), Postives = 161/236 (68.22%), Query Frame = 2 Query: 206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913 A AL V TPS + VVAD TYTVEWTGA S RFE+DL +CGS C + +CG + +LC G EGC D +G YD+ MPEP+ S++GY+VR+ ++ D++ CSD FYLMAS+D P G E G + V SP A +GEEYTVEFDYDNG GS V RF IDLY A +G GDCG +++SICDKP +GCKD+ G+YD+ +P +AG ++IRVG F D+ +Y CS F ++ Sbjct: 16 AANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMA-DGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 229 bits (584), Expect = 3.550e-69 Identity = 119/236 (50.42%), Postives = 161/236 (68.22%), Query Frame = 2 Query: 206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913 A AL V +P+ G VVADS YTVEWTGA+S R+++DL YCGS C + CG + +LC G +GC DT G YDV MPEP+ + +S+GY+V + + D CS DF L+AS + P + G + V SP+ A++G EYTVEFDYDNG GS+V RF IDLY ++ G GDCG ++++ICDKP +GCKD+ G+YD+V+P ++GM+ IRVG+F DD VY CSD FE++ Sbjct: 16 AANALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPM-DGTSSGYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLY-SSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 228 bits (580), Expect = 1.500e-68 Identity = 115/236 (48.73%), Postives = 158/236 (66.95%), Query Frame = 2 Query: 206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913 A AL V +P+ G++V+AD TYTVEWTG S DSRFE+DL YCGS FC + CG + +LC G +GC DT G YD+ MPEP+ SS GY+V + + ++ CS DF L+AS D P GE G S+ V SP+ A++G YTVE+DY+NG GS+ RF IDLY G GDCG +++++CDKP +GC D+ G+YD+ +P AGM+ +RVG+F DD ++ CS+ FE++ Sbjct: 16 AANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDE-SSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 222 bits (565), Expect = 1.840e-66 Identity = 110/197 (55.84%), Postives = 142/197 (72.08%), Query Frame = 2 Query: 206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDT 796 A AL+V+TPS+G+TV+AD TYTVEWTG SSD+RFE+DL YCGS C + +CG + +LC G +GC D +G YD+ MPEP+ S +GY+VR+ +I D CSD+FYL+AS + P VG+E GP++EV SP +A + EYTVEFDYDNG GS V RF IDLY A +G GDCG ++ SICDKP +GCKD+ Sbjct: 17 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRA-DGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12169.1375.1 >prot_H-paniculata_contig12169.1375.1 ID=prot_H-paniculata_contig12169.1375.1|Name=mRNA_H-paniculata_contig12169.1375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp MAFSVMTVTIVAAMTSMLTTATQALRVTTPSEGMTVVADSTYTVEWTGASback to top mRNA from alignment at H-paniculata_contig12169:3897..6694+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12169.1375.1 ID=mRNA_H-paniculata_contig12169.1375.1|Name=mRNA_H-paniculata_contig12169.1375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2798bp|location=Sequence derived from alignment at H-paniculata_contig12169:3897..6694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12169:3897..6694+ >mRNA_H-paniculata_contig12169.1375.1 ID=mRNA_H-paniculata_contig12169.1375.1|Name=mRNA_H-paniculata_contig12169.1375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig12169:3897..6694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |