mRNA_H-paniculata_contig6067.13748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6067.13748.1
Unique NamemRNA_H-paniculata_contig6067.13748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6067.13748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6067contigH-paniculata_contig6067:7306..9770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1574
Cds size1125
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6067.13748.1prot_H-paniculata_contig6067.13748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6067 7306..9322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.6659725-CDS-H-paniculata_contig6067:7305..74041622930676.6659725-CDS-H-paniculata_contig6067:7305..7404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6067 7306..7404 +
1691481401.813285-CDS-H-paniculata_contig6067:7305..74041691481401.813285-CDS-H-paniculata_contig6067:7305..7404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6067 7306..7404 +
1622930676.6805549-CDS-H-paniculata_contig6067:8230..84291622930676.6805549-CDS-H-paniculata_contig6067:8230..8429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6067 8231..8429 +
1691481401.8261378-CDS-H-paniculata_contig6067:8230..84291691481401.8261378-CDS-H-paniculata_contig6067:8230..8429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6067 8231..8429 +
1622930676.7152307-CDS-H-paniculata_contig6067:8495..93221622930676.7152307-CDS-H-paniculata_contig6067:8495..9322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6067 8496..9322 +
1691481401.8346379-CDS-H-paniculata_contig6067:8495..93221691481401.8346379-CDS-H-paniculata_contig6067:8495..9322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6067 8496..9322 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.7275853-UTR-H-paniculata_contig6067:9322..97701622930676.7275853-UTR-H-paniculata_contig6067:9322..9770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6067 9323..9770 +
1691481401.8438582-UTR-H-paniculata_contig6067:9322..97701691481401.8438582-UTR-H-paniculata_contig6067:9322..9770Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6067 9323..9770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6067.13748.1

>prot_H-paniculata_contig6067.13748.1 ID=prot_H-paniculata_contig6067.13748.1|Name=mRNA_H-paniculata_contig6067.13748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp
GAGWREKRVGAFKPAAGKVELEVFGRRVASFGQRTGEEGVDVQVFGKRVR
ISPPSSSPTAVTADLDDGASSSGGGNRDDDGDWEEGTWSSSDDHDDHDDH
DDDDDDYDDGFAGLSVAEEDDAVNDWGSITHAWESGEEEEQQRGYATIES
LGFDEDKGEDAISHGDGGTDAGDSDEDEDEDDGDEGDHGDITGATDGDDD
DGGGGGDRSDDVVDDNDDGDDDDDDGDYDDDAGYSENIEQRHDMHINDEV
LVQQDGRERLSLEPDGAALAPTNAGATISGDEKTGGEKHDEEKENYGEHA
QVGRPSSASLTPSKRSKHHRSKARTKRQGADPTADPIGESINFDVHHDTP
RRRRQRPLGLAGDSGADLRRRQPR*
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mRNA from alignment at H-paniculata_contig6067:7306..9770+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6067.13748.1 ID=mRNA_H-paniculata_contig6067.13748.1|Name=mRNA_H-paniculata_contig6067.13748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2465bp|location=Sequence derived from alignment at H-paniculata_contig6067:7306..9770+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGGTGGAGGGAAAAGCGAGTGGGTGCGTTCAAACCTGCCGCCGG
GAAGGTTGAACTGGAGGTGTTTGGGCGGAGGGTCGCGTCTTTCGGTCAGG
TGAGTCGATATGTCTCGAGTTGTTTTTAGTCGCCGGGGGTGTTGCATGAT
TTTGCGTGGTGCCTCGGTTAAGAAATTTGTCATTTGCCAGTGATGGGGAT
GGTGGGGTGGGGGTAGGTAGTGCGTAAACTCCAGCGTACGGAGGAGTTGT
GTTGGTACTATAGGTGGACTGGTTACTGCACTGTTGCGTACGAGGTTCTC
AACACTTGTTTTTAGCTTGTGCACAGATATTTTCAAAATAATGTATATAT
TCACGCCATTCGGTTAAACTGTGTGATAGATCAGGATTAAAACATAATCG
AAAAATTATGTTCTTGGAGTATATTGTCTACTGGGCGGTTGCAAAGGTCA
GTGGGCGTTATAGTCGTTTTTTCGTGTCGCTTGTCTTTTTTAGTCGAAGT
TTACATCTAGGTGTTTGATGTGCCGTGTTGTCCAGATGTATGAATGAAAG
CATGTACAAACCAGTACACGGTTTCTATCCCATAGCAGTATCCTCTGCTA
TCTCTGTTTATGTTTCTACTTTTTCAATCCATTACCTCGGCAAAAAAAAT
AAGAGATGCACTAAATTCATATTGTGCTTGTGTAGTGTTTTGTCCAAATT
TCATCGGTTGGCAAGATGTGCTCTGACTTCCCTTAGCGCATATCGTTGCC
TTTCCGCTTCGCTTACATTCCACCGTTTGGGTTTGTGCCTCGCGTTTCGC
TTCGCTTTGCGATCCTTGCATACGCCAACAGTATACAACGATGGCACCCC
CATCATCATCATCATCATAAACAACAACAATGTAACTTTCCTCCCTCGGT
GAAACTTCCCTCCGTGAAACTTCAGAGAACTGGTGAAGAAGGCGTCGACG
TTCAGGTCTTTGGCAAACGGGTTCGAATCAGTCCGCCCTCTTCCTCCCCG
ACGGCGGTGACTGCAGACCTTGATGACGGCGCTAGTAGCAGTGGTGGTGG
TAACCGAGATGATGATGGCGATTGGGAGGAAGGGACTTGGTCATCGTCAG
ATGACCATGATGACCATGATGACCATGATGACCATGATGATGATGATGAT
GATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGA
TGATGATGATTATGATGATGGTTTTGCAGGGTTGTCTGTTGCTGAGGAGG
ATGATGCGGTGAACGACTGGGGTAGTATTACTCATGCTTGGGAATCGGGA
GAGGAGGAGGAACAGCAACGAGGTTATGCTACGATTGAGTCTCTCGGTTT
CGATGAAGATAAAGGAGAGGACGCCATTTCACACGGAGACGGCGGTACTG
ATGCTGGAGATAGTGATGAAGATGAAGACGAAGATGATGGTGATGAAGGT
GACCACGGTGATATCACTGGTGCCACTGATGGTGACGATGATGACGGTGG
TGGTGGAGGCGATCGTAGTGATGATGTTGTTGATGATAACGACGACGGTG
ATGATGATGATGATGATGGCGATTATGATGATGATGCGGGTTACTCTGAA
AACATCGAACAGCGTCATGATATGCACATCAACGATGAGGTACTTGTACA
GCAAGATGGGCGAGAGAGGTTGTCATTGGAACCGGATGGCGCCGCACTCG
CCCCTACTAATGCCGGCGCAACCATTTCCGGCGACGAGAAGACTGGAGGA
GAAAAACACGACGAAGAAAAAGAAAATTACGGAGAACATGCGCAAGTAGG
GAGACCATCCTCGGCATCATTGACACCATCGAAACGGAGCAAACACCACC
GCTCCAAAGCGCGAACAAAGAGACAAGGAGCCGATCCTACCGCAGACCCC
ATCGGCGAATCAATCAACTTCGACGTCCATCACGATACACCAAGACGGCG
ACGACAGCGCCCCCTAGGCTTGGCAGGTGATAGTGGTGCTGATTTGCGTC
GCCGGCAACCACGATAGCTCTAGCTCTAGTTCTCTCGGGAGATTGGCCAT
GGTATATTGCCGCACCGAGATGATGAGACCCGGTGGGCCTGGAGGGCGAG
TAAACCAGGCACCGTGAGCTAGCTCTGTTATTAAAAGCTTAGTTTGTGCT
CAAGTGCTCAGGAGATTATAGGAAGAGCTACGAGATTTTTGTGTTTTTTT
TTCCTATTGGTGGTTGTATTTTATCAAATGCCGGCTTGACGGAGGGCATG
TCGTCCGTTCTATAGTTGCATCTCTGTCAGCAAAGATGAGCTATAGTGAG
GAGTAACAAGTGAGAATAGTAGCGGGCTATTTTCGCAGGACAGCGAGAAT
TTTCTTGACATGGGCCCTGCAGCGCAGGGCAGTGCAGCGCAGTAAGTCCA
TTGATAATTCGAACTCGTATCAAACCAACTGTAAGGTGGTGATAATGATA
TACATTTTGAAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6067:7306..9770+

>mRNA_H-paniculata_contig6067.13748.1 ID=mRNA_H-paniculata_contig6067.13748.1|Name=mRNA_H-paniculata_contig6067.13748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2250bp|location=Sequence derived from alignment at H-paniculata_contig6067:7306..9770+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGGTGGAGGGAAAAGCGAGTGGGTGCGTTCAAACCTGCCGCCGG
GAAGGTTGAACTGGAGGTGTTTGGGCGGAGGGTCGCGTCTTTCGGTCAGG
GGGCGGGGTGGAGGGAAAAGCGAGTGGGTGCGTTCAAACCTGCCGCCGGG
AAGGTTGAACTGGAGGTGTTTGGGCGGAGGGTCGCGTCTTTCGGTCAGAG
AACTGGTGAAGAAGGCGTCGACGTTCAGGTCTTTGGCAAACGGGTTCGAA
TCAGTCCGCCCTCTTCCTCCCCGACGGCGGTGACTGCAGACCTTGATGAC
GGCGCTAGTAGCAGTGGTGGTGGTAACCGAGATGATGATGGCGATTGGGA
GGAAGGGACTTGGTCATCGTCAGATGACCATGATGACCATGATGACCAGA
ACTGGTGAAGAAGGCGTCGACGTTCAGGTCTTTGGCAAACGGGTTCGAAT
CAGTCCGCCCTCTTCCTCCCCGACGGCGGTGACTGCAGACCTTGATGACG
GCGCTAGTAGCAGTGGTGGTGGTAACCGAGATGATGATGGCGATTGGGAG
GAAGGGACTTGGTCATCGTCAGATGACCATGATGACCATGATGACCATGA
TGATGATGATGATGATTATGATGATGGTTTTGCAGGGTTGTCTGTTGCTG
AGGAGGATGATGCGGTGAACGACTGGGGTAGTATTACTCATGCTTGGGAA
TCGGGAGAGGAGGAGGAACAGCAACGAGGTTATGCTACGATTGAGTCTCT
CGGTTTCGATGAAGATAAAGGAGAGGACGCCATTTCACACGGAGACGGCG
GTACTGATGCTGGAGATAGTGATGAAGATGAAGACGAAGATGATGGTGAT
GAAGGTGACCACGGTGATATCACTGGTGCCACTGATGGTGACGATGATGA
CGGTGGTGGTGGAGGCGATCGTAGTGATGATGTTGTTGATGATAACGACG
ACGGTGATGATGATGATGATGATGGCGATTATGATGATGATGCGGGTTAC
TCTGAAAACATCGAACAGCGTCATGATATGCACATCAACGATGAGGTACT
TGTACAGCAAGATGGGCGAGAGAGGTTGTCATTGGAACCGGATGGCGCCG
CACTCGCCCCTACTAATGCCGGCGCAACCATTTCCGGCGACGAGAAGACT
GGAGGAGAAAAACACGACGAAGAAAAAGAAAATTACGGAGAACATGCGCA
AGTAGGGAGACCATCCTCGGCATCATTGACACCATCGAAACGGAGCAAAC
ACCACCGCTCCAAAGCGCGAACAAAGAGACAAGGAGCCGATCCTACCGCA
GACCCCATCGGCGAATCAATCAACTTCGACGTCCATCACGATACACCAAG
ACGGCGACGACAGCGCCCCCTAGGCTTGGCAGGTGATAGTGGTGCTGATT
TGCGTCGCCGGCAACCACGATAGATGATGATGATGATGATGATTATGATG
ATGGTTTTGCAGGGTTGTCTGTTGCTGAGGAGGATGATGCGGTGAACGAC
TGGGGTAGTATTACTCATGCTTGGGAATCGGGAGAGGAGGAGGAACAGCA
ACGAGGTTATGCTACGATTGAGTCTCTCGGTTTCGATGAAGATAAAGGAG
AGGACGCCATTTCACACGGAGACGGCGGTACTGATGCTGGAGATAGTGAT
GAAGATGAAGACGAAGATGATGGTGATGAAGGTGACCACGGTGATATCAC
TGGTGCCACTGATGGTGACGATGATGACGGTGGTGGTGGAGGCGATCGTA
GTGATGATGTTGTTGATGATAACGACGACGGTGATGATGATGATGATGAT
GGCGATTATGATGATGATGCGGGTTACTCTGAAAACATCGAACAGCGTCA
TGATATGCACATCAACGATGAGGTACTTGTACAGCAAGATGGGCGAGAGA
GGTTGTCATTGGAACCGGATGGCGCCGCACTCGCCCCTACTAATGCCGGC
GCAACCATTTCCGGCGACGAGAAGACTGGAGGAGAAAAACACGACGAAGA
AAAAGAAAATTACGGAGAACATGCGCAAGTAGGGAGACCATCCTCGGCAT
CATTGACACCATCGAAACGGAGCAAACACCACCGCTCCAAAGCGCGAACA
AAGAGACAAGGAGCCGATCCTACCGCAGACCCCATCGGCGAATCAATCAA
CTTCGACGTCCATCACGATACACCAAGACGGCGACGACAGCGCCCCCTAG
GCTTGGCAGGTGATAGTGGTGCTGATTTGCGTCGCCGGCAACCACGATAG
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