mRNA_H-paniculata_contig12169.1375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12169.1375.1
Unique NamemRNA_H-paniculata_contig12169.1375.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 5.230e-96
Identity = 143/241 (59.34%), Postives = 185/241 (76.76%), Query Frame = 2
Query:  203 TATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFD-SNCGFLIESLCTEGI-EGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYA--NEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913
            T+T+AL+V TP+   TVV+   Y V W GAS+D RFE+DL YCGSYS+CF+ + CGF + ++C EG   GC    D    V  PEPLG RS+ GYR+RIAE+G   DT RCSDDFYLM+S D P VGE+GGP+IEV++PT D++AI+GE YTVEFDYDNGFG  +GRFKIDLY A   +G GDCG W++S+CDKPDVGC D+ G+Y++V+P  ++ GM++IRVGLFGDD++Y+CS  FEV+
Sbjct:   21 TSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVV 259          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.450e-92
Identity = 139/254 (54.72%), Postives = 184/254 (72.44%), Query Frame = 2
Query:  203 TATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDS--NCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFE-------VLPLGEGIWL 937
            T+T+ALRV TP+   +V +   Y V W GA +D RFEVDL YCGSYSFCF    +CGF I ++C E  + C +  D    V  PEP+   S+NGYRVRI+E+G   D  RCS+DFYL+AS DV   GE GGP++EV++P  +++A++GE YTVEFDYDNGFG  +GRFKIDLY A EG+GDCG W++S+CDKPD+GC+D+ G+YD+V+P  ++ GM++IRVGLFGDDS+Y+CS  FE       VL  G G+W+
Sbjct:   20 TSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGT--DNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA-EGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLWM 270          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.490e-90
Identity = 144/260 (55.38%), Postives = 190/260 (73.08%), Query Frame = 2
Query:  167 VTIVAAMTSML---TTATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDS--NCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVLPLGEGI 931
            V  +AA+T ML    T T+ALRV TP+   TVV+D  Y V W GAS D RFE+DL YCGSYSFCF+    CGF + +LC EG + C    D    V +PEP+   S++GYRVRI ++G   +T RCSD+FYLM+S D     ++ GP++EV++P+  ++A++G  YTVEFDYDNGFG+  GRFKIDLY+A EG GDCG W+SS+CDKPDVGC DT G+YDIV+P+ ++ GM++IRVGLFGDDSV++CS  FEV+P  +G+
Sbjct:    5 VAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGT--ETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHA-EGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 6.880e-82
Identity = 129/236 (54.66%), Postives = 167/236 (70.76%), Query Frame = 2
Query:  206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913
            A  AL V TP+EG  VVA   YTVEWTG  S++R+E+DL YCGS   C +  CG  + +LC  G +GC  D +G YD+ MPEP+   S +GY+VR+A++    D+  CSD+FYLMA  + P  G+ GGP + V SP+    A +GEEYTVEFDYDNG GS+VGRF IDLY A  G GDCG ++ ++CDKP +GCKD+ G+YD+ +P+ A+AGM+ IRVG F DDSVY CSDEFE+L
Sbjct:    4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSAT-GSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 1.680e-80
Identity = 128/235 (54.47%), Postives = 168/235 (71.49%), Query Frame = 2
Query:  206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEV 910
            A  AL+V+TPS+G+TV+AD TYTVEWTG SSD+RFE+DL YCGS   C + +CG  + +LC  G +GC  D +G YD+ MPEP+   S +GY+VR+ +I    D   CSD+FYL+AS + P VG+E GP++EV SP    +A +  EYTVEFDYDNG GS+V RF IDLY A +G GDCG ++ SICDKP +GCKD+ G+YD+ +P    AG ++IRV  F DDS+YSCS  F +
Sbjct:   16 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRA-DGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 7.930e-79
Identity = 124/233 (53.22%), Postives = 162/233 (69.53%), Query Frame = 2
Query:  215 ALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913
            AL V TP+ G  VV+   YTVEW+G  S+ RFE+DL YC S   C +  CG  + +LC  G +GC  D +G YD+ MPEP+   S +GY+VR+A++    D+  CSD+FYLMA  D P   + GGP + V SP+    A +GEEYTVEFDYDNG GS+VGRF IDLY A  G GDCG ++ ++CDKP +GCKD+ G+YD+ +P+ A+AGM+ IRVG F D+SVY CSDEFE+L
Sbjct:   20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAAT-GSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.480e-75
Identity = 124/236 (52.54%), Postives = 161/236 (68.22%), Query Frame = 2
Query:  206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913
            A  AL V TPS  + VVAD TYTVEWTGA S  RFE+DL +CGS   C + +CG  + +LC  G EGC  D +G YD+ MPEP+   S++GY+VR+ ++    D++ CSD FYLMAS+D P  G E G  + V SP     A +GEEYTVEFDYDNG GS V RF IDLY A +G GDCG +++SICDKP +GCKD+ G+YD+ +P   +AG ++IRVG F D+ +Y CS  F ++
Sbjct:   16 AANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMA-DGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 3.550e-69
Identity = 119/236 (50.42%), Postives = 161/236 (68.22%), Query Frame = 2
Query:  206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913
            A  AL V +P+ G  VVADS YTVEWTGA+S  R+++DL YCGS   C +  CG  + +LC  G +GC  DT G YDV MPEP+ + +S+GY+V + +     D   CS DF L+AS + P   + G   + V SP+    A++G EYTVEFDYDNG GS+V RF IDLY ++ G GDCG ++++ICDKP +GCKD+ G+YD+V+P   ++GM+ IRVG+F DD VY CSD FE++
Sbjct:   16 AANALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPM-DGTSSGYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLY-SSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.500e-68
Identity = 115/236 (48.73%), Postives = 158/236 (66.95%), Query Frame = 2
Query:  206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCSDEFEVL 913
            A  AL V +P+ G++V+AD TYTVEWTG S DSRFE+DL YCGS  FC +  CG  + +LC  G +GC  DT G YD+ MPEP+   SS GY+V + +      ++ CS DF L+AS D P  GE G  S+ V SP+    A++G  YTVE+DY+NG GS+  RF IDLY    G GDCG +++++CDKP +GC D+ G+YD+ +P    AGM+ +RVG+F DD ++ CS+ FE++
Sbjct:   16 AANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDE-SSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244          
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.840e-66
Identity = 110/197 (55.84%), Postives = 142/197 (72.08%), Query Frame = 2
Query:  206 ATQALRVTTPSEGMTVVADSTYTVEWTGASSDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFMPEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPSIEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCGGWISSICDKPDVGCKDT 796
            A  AL+V+TPS+G+TV+AD TYTVEWTG SSD+RFE+DL YCGS   C + +CG  + +LC  G +GC  D +G YD+ MPEP+   S +GY+VR+ +I    D   CSD+FYL+AS + P VG+E GP++EV SP    +A +  EYTVEFDYDNG GS V RF IDLY A +G GDCG ++ SICDKP +GCKD+
Sbjct:   17 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDA-DCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRA-DGDGDCGTYVQSICDKPTIGCKDS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12169.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI5.230e-9659.34EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE1.450e-9254.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI1.490e-9055.38EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI6.880e-8254.66EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE1.680e-8054.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE7.930e-7953.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI1.480e-7552.54EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3E8_ECTSI3.550e-6950.42Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G3F0_ECTSI1.500e-6848.73EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FH21_ECTSI1.840e-6655.84Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12169contigH-paniculata_contig12169:3897..6694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1352
Cds size795
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.6245632-UTR-H-paniculata_contig12169:3896..40411622928936.6245632-UTR-H-paniculata_contig12169:3896..4041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12169 3897..4041 +
1691480673.5498328-UTR-H-paniculata_contig12169:3896..40411691480673.5498328-UTR-H-paniculata_contig12169:3896..4041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12169 3897..4041 +
1622928936.724027-UTR-H-paniculata_contig12169:6282..66941622928936.724027-UTR-H-paniculata_contig12169:6282..6694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12169 6283..6694 +
1691480673.6039386-UTR-H-paniculata_contig12169:6282..66941691480673.6039386-UTR-H-paniculata_contig12169:6282..6694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12169 6283..6694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.6382935-CDS-H-paniculata_contig12169:4041..41601622928936.6382935-CDS-H-paniculata_contig12169:4041..4160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 4042..4160 +
1691480673.55917-CDS-H-paniculata_contig12169:4041..41601691480673.55917-CDS-H-paniculata_contig12169:4041..4160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 4042..4160 +
1622928936.6517801-CDS-H-paniculata_contig12169:4820..49111622928936.6517801-CDS-H-paniculata_contig12169:4820..4911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 4821..4911 +
1691480673.567956-CDS-H-paniculata_contig12169:4820..49111691480673.567956-CDS-H-paniculata_contig12169:4820..4911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 4821..4911 +
1622928936.6658642-CDS-H-paniculata_contig12169:5318..56211622928936.6658642-CDS-H-paniculata_contig12169:5318..5621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 5319..5621 +
1691480673.5765889-CDS-H-paniculata_contig12169:5318..56211691480673.5765889-CDS-H-paniculata_contig12169:5318..5621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 5319..5621 +
1622928936.68455-CDS-H-paniculata_contig12169:5766..59051622928936.68455-CDS-H-paniculata_contig12169:5766..5905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 5767..5905 +
1691480673.5870092-CDS-H-paniculata_contig12169:5766..59051691480673.5870092-CDS-H-paniculata_contig12169:5766..5905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 5767..5905 +
1622928936.702156-CDS-H-paniculata_contig12169:6139..62821622928936.702156-CDS-H-paniculata_contig12169:6139..6282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 6140..6282 +
1691480673.5966284-CDS-H-paniculata_contig12169:6139..62821691480673.5966284-CDS-H-paniculata_contig12169:6139..6282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12169 6140..6282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12169.1375.1prot_H-paniculata_contig12169.1375.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12169 4042..6282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12169.1375.1

>prot_H-paniculata_contig12169.1375.1 ID=prot_H-paniculata_contig12169.1375.1|Name=mRNA_H-paniculata_contig12169.1375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MAFSVMTVTIVAAMTSMLTTATQALRVTTPSEGMTVVADSTYTVEWTGAS
SDSRFEVDLTYCGSYSFCFDSNCGFLIESLCTEGIEGCALDTDGGYDVFM
PEPLGERSSNGYRVRIAEIGGSFDTVRCSDDFYLMASQDVPMVGEEGGPS
IEVLSPTVDSVAISGEEYTVEFDYDNGFGSTVGRFKIDLYYANEGHGDCG
GWISSICDKPDVGCKDTTGNYDIVMPQVAQAGMHRIRVGLFGDDSVYSCS
DEFEVLPLGEGIWL*
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mRNA from alignment at H-paniculata_contig12169:3897..6694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12169.1375.1 ID=mRNA_H-paniculata_contig12169.1375.1|Name=mRNA_H-paniculata_contig12169.1375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2798bp|location=Sequence derived from alignment at H-paniculata_contig12169:3897..6694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTCACAAACCACTCTTCTGTCTCCACCTCTCTCCACGACACTATATCA CTACCATCGAAGCAGATCGCATCACTGCATTCAAGAGTACGAGAAGCTTC TTTTGTCCTGTTCTTTGTACTTGTCATCGAATTCCTGCGTTCGAAATGGC CTTCTCCGTAATGACCGTGACAATCGTGGCTGCGATGACAAGCATGCTGA CTACTGCTACTCAAGCGCTGCGTGTAACCACGCCGTCGGAAGGCATGACT GTGGTCGCTGACAGGTGAAGTATCTCCGAGCTGTCGAGGAATTCGCTTAT TCTACGTAGTGAGAAGTAGCTCGCCCTTGTGCAGGGATGGCAATTGCGAA CGCGGGCTATCTTTGAGACCATGAACTCTCACGTTACGCCCACCATATTG CCCTTTCGCCCTTGGTGTGTGCGCGTTTGCCCTTACTTTTTGTGGGTGCC CTGTGCTAGATTATATTGTGCCTGTGACGTTGAGTTCCACACACAGCTGG TGGTGTCCTCTGATACTCGCTGTACTTGACTTTTTATACAGACTTTGACA GTATGTTTCACAAGTAGTGACCACAAATTTACTGACTGTCAGGTAACAGC ATGCACTGCGTCTTACAGTTCGCGTTTTCGCATTTTGTAGAATCACCCCA ATTCATTTGAGAATCAAAACCACGTTTGGCGAAACATGATCTTTTCATAT TTGGAAAATGAATCGAATGGGGGAAATTGTAATTGTCAACATGCAACACT TTATTCGAAAATGAGGGTGGTGAGGGAGGGGTACCCTACTACTACTGTAC AAGATGTGTAAGTGACATAGAAATGTACGGCCGGTTCCGAGGACGAGGTC ATTATTTGCTCCTAACGTTATCCCAAGTACTTTCTCAATCTCCTTGATTC GTTCCCTCCTTTCCCATCCTGCAGCACATACACGGTGGAGTGGACGGGCG CCTCCTCAGACTCGCGATTCGAGGTCGACCTGACGTACTGTGGATCCTAT TCGTTCTGCTTCGATGTGAGTTTACCGGAGAAACATAGCAGTACTGAAAA TGTTGTCAGATAGTGGTATAGAGGTATGTGCCTTTGCACTTTTTTTTTAA AGAGCGGTCGCCCAAACTCCATATCCTGGAACCACACCTTCTTGTAACCC TCTTGCTGTTTTCTTAATCCAAAGCTGAGCGTTGAATACCGTCAGGATGG CACACAACTTACCCGAGCTTTCAGACCCCTGCAGCCGCGATGGGCCTCAG GACTTGGACATGCGTGTCGCAGTAGCATGCGACAGCAAAACTAGTAAAGG ATACTTGTATGTATTGTCTTCCAATTTTCTAGACTTTTAACTCTCTGAAA CCATGCCCAACTCACCCTTAGCCCCATTTCCGCTTTTCTGTGCTTTTCCC CAAATTCACAACACGAACCCAGTCCAACTGCGGTTTCCTCATTGAGAGCT TGTGCACAGAGGGGATCGAGGGCTGTGCTCTGGACACGGACGGTGGTTAC GATGTTTTTATGCCGGAACCGTTGGGGGAGCGATCGAGCAACGGCTATAG GGTGCGTATCGCGGAAATCGGAGGAAGCTTCGACACGGTCCGGTGCTCAG ATGACTTCTACCTCATGGCATCGCAAGACGTTCCAATGGTCGGCGAAGAA GGCGGACCGTCGATCGAAGTGCTATCTCCGACAGTGGATTCGGTGGCGAT TTCTGGAGAAGAGTACACAGTTGAGGTAGGCGCTCAACCGTCGTTCCTGT AGAATACATTCGTAGGCGGTTGACGGTCTCTTCGGTGTGTCCGCTCCGCG TGTTGGGTATCACCCCAACCCCGCTTCGTTTTGGTGTCTGCTGCCACTGT AATTTCTTCTGTACGTACAGTTTGACTACGATAACGGGTTCGGCAGCACG GTGGGGCGTTTCAAGATCGACTTGTACTACGCCAACGAGGGCCACGGCGA TTGTGGGGGCTGGATTAGTTCCATCTGCGACAAGCCCGACGTCGGCTGCA AAGACACCAGTGAGCAGTACACTCGTGTAGTTACTGCATTGAACTGGAGA TTGAAATGGACGAAAATGAATCACAGGAATAGCAATCTTCCGTTGGCGGT GAACATTGTGATTGAATGAACGAAGCCAAGAACCAATCCTTGAACCTGTA AGAAATCCGCCGCTGACACCACTGCTTGCCCCTATTTTGCCTTGTTCAAC ACCCTCCGTGATGCTCTCTTCTCTGGACTATTTTGTGGAACAGCCGGAAA CTACGACATCGTGATGCCGCAAGTGGCTCAGGCCGGCATGCACAGGATCC GCGTGGGCCTGTTCGGGGATGATTCTGTATATTCTTGCTCCGACGAATTC GAAGTCCTGCCTTTGGGGGAGGGTATTTGGTTGTAGACCATGCAGCAGCT TTGCAATAAATCTCGCCTTGTCAGTAGCGGTGTAATTTCGAAGTTTTGTG ATTGAGTAGGACAGTACGTGTGTTGAACCTGTATTTAAAGTTGTGCAGTT GGTTAGTTGGTTCTTTGTGAAGAGGGCGTGCTACTGTCGAGTGACCTTCC AGTACGGCTGCGCTCTCACTAGTTGTTGCGAAATATTTTATGAGCTCCGT GATTGAGGACATTTTTCAGAGTCCACACTGTTGTGAGTATCTTTTGACTT TTCCGTATGAGTGTGTTTCATGTTGAGTGAATGCCGGTGCCCTTGGGTTC CGTGTGATGTTGTGCACGTTACGATTGTAGATTTCCTACAACGTGGTCAT GCCTGAACCTTGGTTCTTTGAGAATAATGGAAGATTCATTGAAGTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig12169:3897..6694+

>mRNA_H-paniculata_contig12169.1375.1 ID=mRNA_H-paniculata_contig12169.1375.1|Name=mRNA_H-paniculata_contig12169.1375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig12169:3897..6694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTTCTCCGTAATGACCGTGACAATCGTGGCTGCGATGACAAGCAT
GCTGACTACTGCTACTCAAGCGCTGCGTGTAACCACGCCGTCGGAAGGCA
TGACTGTGGTCGCTGACAGATGGCCTTCTCCGTAATGACCGTGACAATCG
TGGCTGCGATGACAAGCATGCTGACTACTGCTACTCAAGCGCTGCGTGTA
ACCACGCCGTCGGAAGGCATGACTGTGGTCGCTGACAGCACATACACGGT
GGAGTGGACGGGCGCCTCCTCAGACTCGCGATTCGAGGTCGACCTGACGT
ACTGTGGATCCTATTCGTTCTGCTTCGATCACATACACGGTGGAGTGGAC
GGGCGCCTCCTCAGACTCGCGATTCGAGGTCGACCTGACGTACTGTGGAT
CCTATTCGTTCTGCTTCGATTCCAACTGCGGTTTCCTCATTGAGAGCTTG
TGCACAGAGGGGATCGAGGGCTGTGCTCTGGACACGGACGGTGGTTACGA
TGTTTTTATGCCGGAACCGTTGGGGGAGCGATCGAGCAACGGCTATAGGG
TGCGTATCGCGGAAATCGGAGGAAGCTTCGACACGGTCCGGTGCTCAGAT
GACTTCTACCTCATGGCATCGCAAGACGTTCCAATGGTCGGCGAAGAAGG
CGGACCGTCGATCGAAGTGCTATCTCCGACAGTGGATTCGGTGGCGATTT
CTGGAGAAGAGTACACAGTTGAGTCCAACTGCGGTTTCCTCATTGAGAGC
TTGTGCACAGAGGGGATCGAGGGCTGTGCTCTGGACACGGACGGTGGTTA
CGATGTTTTTATGCCGGAACCGTTGGGGGAGCGATCGAGCAACGGCTATA
GGGTGCGTATCGCGGAAATCGGAGGAAGCTTCGACACGGTCCGGTGCTCA
GATGACTTCTACCTCATGGCATCGCAAGACGTTCCAATGGTCGGCGAAGA
AGGCGGACCGTCGATCGAAGTGCTATCTCCGACAGTGGATTCGGTGGCGA
TTTCTGGAGAAGAGTACACAGTTGAGTTTGACTACGATAACGGGTTCGGC
AGCACGGTGGGGCGTTTCAAGATCGACTTGTACTACGCCAACGAGGGCCA
CGGCGATTGTGGGGGCTGGATTAGTTCCATCTGCGACAAGCCCGACGTCG
GCTGCAAAGACACCATTTGACTACGATAACGGGTTCGGCAGCACGGTGGG
GCGTTTCAAGATCGACTTGTACTACGCCAACGAGGGCCACGGCGATTGTG
GGGGCTGGATTAGTTCCATCTGCGACAAGCCCGACGTCGGCTGCAAAGAC
ACCACCGGAAACTACGACATCGTGATGCCGCAAGTGGCTCAGGCCGGCAT
GCACAGGATCCGCGTGGGCCTGTTCGGGGATGATTCTGTATATTCTTGCT
CCGACGAATTCGAAGTCCTGCCTTTGGGGGAGGGTATTTGGTTGTAGCCG
GAAACTACGACATCGTGATGCCGCAAGTGGCTCAGGCCGGCATGCACAGG
ATCCGCGTGGGCCTGTTCGGGGATGATTCTGTATATTCTTGCTCCGACGA
ATTCGAAGTCCTGCCTTTGGGGGAGGGTATTTGGTTGTAG
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