prot_H-paniculata_contig60602.13743.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig60602.13743.1
Unique Nameprot_H-paniculata_contig60602.13743.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length109
Homology
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BLAST of mRNA_H-paniculata_contig60602.13743.1 vs. uniprot
Match: A0A6G0WPU6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPU6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.100e-5
Identity = 24/80 (30.00%), Postives = 48/80 (60.00%), Query Frame = 0 
Query:    5 IDNGVWMQVERPNNKLVMSTMMIYQRKIGEDSSVEKYKCRLLAHRNHQIKGVHFQEASYPAPAAASTKVMLLLAVIQHWE 84
            ++NG W+ VERPN+++V++   +Y+ K   + ++ +YK RL+     QI+G+ F E   P     + + +LL + ++ W+
Sbjct:   24 LENGTWILVERPNDRVVINNKWLYKIKRDREGNL-RYKARLVIKGYEQIEGMDFDETFAPVVRFETLRFILLYSAMREWK 102
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BLAST of mRNA_H-paniculata_contig60602.13743.1 vs. uniprot
Match: A0A1R3H507_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H507_COCAP)

HSP 1 Score: 52.8 bits (125), Expect = 1.130e-5
Identity = 25/75 (33.33%), Postives = 41/75 (54.67%), Query Frame = 0 
Query:   10 WMQVERPNNKLVMSTMMIYQRKIGEDSSVEKYKCRLLAHRNHQIKGVHFQEASYPAPAAASTKVMLLLAVIQHWE 84
            W  V+ P +K V+    +Y+ K   DSS+E+YK RL+A    Q  G+ ++E   P     S + +L +A ++ WE
Sbjct:  455 WDLVDMPPSKSVVDCKWVYKIKTCSDSSIERYKARLVARGFTQEYGIDYEETFAPVAHITSVRTLLAVAAVKRWE 529
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60602.13743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6G0WPU6_9STRA1.100e-530.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1R3H507_COCAP1.130e-533.33Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..83
e-value: 9.4E-8
score: 32.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60602contigH-paniculata_contig60602:573..899 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60602.13743.1mRNA_H-paniculata_contig60602.13743.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig60602 97..933 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig60602.13743.1 ID=prot_H-paniculata_contig60602.13743.1|Name=mRNA_H-paniculata_contig60602.13743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MQGFIDNGVWMQVERPNNKLVMSTMMIYQRKIGEDSSVEKYKCRLLAHRN
HQIKGVHFQEASYPAPAAASTKVMLLLAVIQHWEFGTSTLNKRICRCPST
RSTPSTYP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2