mRNA_H-paniculata_contig60602.13743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60602.13743.1
Unique NamemRNA_H-paniculata_contig60602.13743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60602.13743.1 vs. uniprot
Match: A0A1R3H507_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H507_COCAP)

HSP 1 Score: 59.3 bits (142), Expect = 2.530e-6
Identity = 35/114 (30.70%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:  367 VATFHVEPKNHREV*ASPEWEHRRRAEEVEMQGFIDNGVWMQVERPNNKLVMSTMMIYQRKIGEDSSVEKYKCRLLAHRNHQIKGVHFQEASYPAPAAASTKVMLLLAVIQHWE 708
            + + H EP N +E  ++P W+    AEE+          W  V+ P +K V+    +Y+ K   DSS+E+YK RL+A    Q  G+ ++E   P     S + +L +A ++ WE
Sbjct:  420 IVSLH-EPSNFQEEKSNPLWQQAM-AEEIH--ALEKTHTWDLVDMPPSKSVVDCKWVYKIKTCSDSSIERYKARLVARGFTQEYGIDYEETFAPVAHITSVRTLLAVAAVKRWE 529
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BLAST of mRNA_H-paniculata_contig60602.13743.1 vs. uniprot
Match: A0A6G0WPU6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPU6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.590e-5
Identity = 26/89 (29.21%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  442 AEEVEMQGFIDNGVWMQVERPNNKLVMSTMMIYQRKIGEDSSVEKYKCRLLAHRNHQIKGVHFQEASYPAPAAASTKVMLLLAVIQHWE 708
            A + E    ++NG W+ VERPN+++V++   +Y+ K   + ++ +YK RL+     QI+G+ F E   P     + + +LL + ++ W+
Sbjct:   15 AMDKEYNSLLENGTWILVERPNDRVVINNKWLYKIKRDREGNL-RYKARLVIKGYEQIEGMDFDETFAPVVRFETLRFILLYSAMREWK 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60602.13743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1R3H507_COCAP2.530e-630.70Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A6G0WPU6_9STRA7.590e-529.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60602contigH-paniculata_contig60602:97..933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog4432.XP_010242510.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size817
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60602.13743.1prot_H-paniculata_contig60602.13743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60602 573..899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.1236525-UTR-H-paniculata_contig60602:96..2731622930676.1236525-UTR-H-paniculata_contig60602:96..273Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60602 97..273 +
1691481401.6220114-UTR-H-paniculata_contig60602:96..2731691481401.6220114-UTR-H-paniculata_contig60602:96..273Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60602 97..273 +
1622930676.1454494-UTR-H-paniculata_contig60602:293..5721622930676.1454494-UTR-H-paniculata_contig60602:293..572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60602 294..572 +
1691481401.6326823-UTR-H-paniculata_contig60602:293..5721691481401.6326823-UTR-H-paniculata_contig60602:293..572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60602 294..572 +
1622930676.1724262-UTR-H-paniculata_contig60602:899..9331622930676.1724262-UTR-H-paniculata_contig60602:899..933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60602 900..933 +
1691481401.6501064-UTR-H-paniculata_contig60602:899..9331691481401.6501064-UTR-H-paniculata_contig60602:899..933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60602 900..933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.159096-CDS-H-paniculata_contig60602:572..8991622930676.159096-CDS-H-paniculata_contig60602:572..899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60602 573..899 +
1691481401.6415422-CDS-H-paniculata_contig60602:572..8991691481401.6415422-CDS-H-paniculata_contig60602:572..899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60602 573..899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60602.13743.1

>prot_H-paniculata_contig60602.13743.1 ID=prot_H-paniculata_contig60602.13743.1|Name=mRNA_H-paniculata_contig60602.13743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MQGFIDNGVWMQVERPNNKLVMSTMMIYQRKIGEDSSVEKYKCRLLAHRN
HQIKGVHFQEASYPAPAAASTKVMLLLAVIQHWEFGTSTLNKRICRCPST
RSTPSTYP*
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mRNA from alignment at H-paniculata_contig60602:97..933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60602.13743.1 ID=mRNA_H-paniculata_contig60602.13743.1|Name=mRNA_H-paniculata_contig60602.13743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig60602:97..933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGTGATATGACCATCGATCGGACTCCCCGGCTTGGCAGCAGCGAAT
AAGTGGAGCTGGAAACGACGCCGACAATGCCACCGCGCCAGGAAGACCAG
CCGCTGCAGTCTGAAGAAAACGAGGAGGAGCGGCAGCAGGAGGAAAAGCA
GGACAGGCCTGGCCCTGCGCTGCGCCAGCTAACCGACCATTTCACAGGGT
AGCAACCGTCCGTTCTTTCTACGCGTACTAGAAGCGGCAGGAGCGCCAAC
AACAAAGACTGCGGTGGAGCCGCGCTACAAAGCGTCATCACGGACAACAT
CTACCTCGACGAAGAGGAAGTCATGGTCGACCACGAAGGCGACATCATGG
CGATGCAGGTCGCACTGGCGATGCCCTAAGAACTGAGTAGCGACCTTCCA
TGTGGAGCCCAAGAATCACCGCGAGGTGTAGGCGTCGCCGGAGTGGGAAC
ACCGGCGAAGAGCGGAGGAAGTCGAGATGCAAGGCTTCATCGACAACGGG
GTTTGGATGCAAGTGGAGCGCCCGAATAACAAGCTGGTCATGAGCACGAT
GATGATCTACCAAAGGAAAATCGGTGAGGACAGTAGCGTGGAGAAATACA
AATGCCGCCTGCTCGCCCACAGGAATCATCAGATCAAGGGCGTCCACTTT
CAGGAAGCTTCGTACCCTGCACCCGCAGCGGCCAGCACAAAAGTGATGTT
GTTGCTTGCGGTAATCCAGCACTGGGAGTTCGGCACGTCGACTTTGAACA
AGCGTATCTGCAGGTGTCCATCGACCAGGAGTACTCCCTCAACCTACCCG
TAGCATACTGGGACTTCCCAGGAGCGATCGGGCGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig60602:97..933+

>mRNA_H-paniculata_contig60602.13743.1 ID=mRNA_H-paniculata_contig60602.13743.1|Name=mRNA_H-paniculata_contig60602.13743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig60602:97..933+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCTTCATCGACAACGGGGTTTGGATGCAAGTGGAGCGCCCGAA
TAACAAGCTGGTCATGAGCACGATGATGATCTACCAAAGGAAAATCGGTG
AGGACAGTAGCGTGGAGAAATACAAATGCCGCCTGCTCGCCCACAGGAAT
CATCAGATCAAGGGCGTCCACTTTCAGGAAGCTTCGTACCCTGCACCCGC
AGCGGCCAGCACAAAAGTGATGTTGTTGCTTGCGGTAATCCAGCACTGGG
AGTTCGGCACGTCGACTTTGAACAAGCGTATCTGCAGGTGTCCATCGACC
AGGAGTACTCCCTCAACCTACCCGTAGATGCAAGGCTTCATCGACAACGG
GGTTTGGATGCAAGTGGAGCGCCCGAATAACAAGCTGGTCATGAGCACGA
TGATGATCTACCAAAGGAAAATCGGTGAGGACAGTAGCGTGGAGAAATAC
AAATGCCGCCTGCTCGCCCACAGGAATCATCAGATCAAGGGCGTCCACTT
TCAGGAAGCTTCGTACCCTGCACCCGCAGCGGCCAGCACAAAAGTGATGT
TGTTGCTTGCGGTAATCCAGCACTGGGAGTTCGGCACGTCGACTTTGAAC
AAGCGTATCTGCAGGTGTCCATCGACCAGGAGTACTCCCTCAACCTACCC
GTAG
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