mRNA_H-paniculata_contig6060.13741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6060.13741.1
Unique NamemRNA_H-paniculata_contig6060.13741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: A0A7M7K954_VARDE (Protein kinase domain-containing protein n=6 Tax=Varroa TaxID=62624 RepID=A0A7M7K954_VARDE)

HSP 1 Score: 59.3 bits (142), Expect = 1.830e-8
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGERLKIPLG--CDSFYRNLMTDCWQEEPHQRPKFDRILRVL 186
            G +P+ G++  AI++ +G  E+L +P+   C   ++NLMTDCW  +PH+RP FD+I+  L
Sbjct:  206 GQIPYKGVDPVAIAYGIG-SEKLTLPIPETCPEKFKNLMTDCWNADPHRRPLFDKIIYQL 264          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: A0A0B6YSJ3_9EUPU (PK_Tyr_Ser-Thr domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YSJ3_9EUPU)

HSP 1 Score: 56.6 bits (135), Expect = 3.550e-8
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGE-RLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQKELTGNP 222
            G  P+ GI+T  +++ V + +  L IP  C   +  LMTDCW +EPH+RP F  IL+ L++         P
Sbjct:    4 GETPYKGIDTLGVAYGVAVNKLTLPIPSTCPQMFSQLMTDCWYQEPHERPTFLEILQRLQEIATSSFIKTP 74          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: UPI001455CE21 (deleted in malignant brain tumors 1 protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455CE21)

HSP 1 Score: 57.8 bits (138), Expect = 6.450e-8
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 LCSNGVLPWAGINTQAISFTVGMGERLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQKELTGN 219
            + ++G  P+AGI T+++   +  G R+  P  CD    +LMT CWQE+P  RP F +++ +L +      TGN
Sbjct: 1797 IATHGGTPYAGIKTESMVLRLEDGYRMPKPSNCDENIYDLMTQCWQEDPGDRPSFKKLVSILTRM----TTGN 1865          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: UPI0009E50E84 (mitogen-activated protein kinase kinase kinase 10-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E50E84)

HSP 1 Score: 57.4 bits (137), Expect = 8.680e-8
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGE-RLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVL 186
            G +P+  +   A+++ V M    L IP  C  F+++LM DCWQ++PH+RP F  IL  L
Sbjct:  311 GQVPYRDVEALAVAYGVAMNSLTLPIPSTCPDFFKDLMKDCWQQDPHKRPSFQGILEDL 369          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: A0A151NR26_ALLMI (Mitogen-activated protein kinase kinase kinase 11 n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151NR26_ALLMI)

HSP 1 Score: 56.2 bits (134), Expect = 1.940e-7
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGE-RLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQKELTGNPP 225
            G +P+ GI+  A+++ V + +  L IP  C   +  LM +CW ++PH+RP F  +L  L+  +Q+ L   PP
Sbjct:   90 GEVPYRGIDGLAVAYGVAVNKLTLPIPSTCPEPFAQLMAECWDQDPHERPSFGAVLSQLEALEQQGLAELPP 161          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: A0A1U7S8Q1_ALLSI (mitogen-activated protein kinase kinase kinase 11 n=1 Tax=Alligator sinensis TaxID=38654 RepID=A0A1U7S8Q1_ALLSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.130e-7
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGE-RLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQKELTGNPP 225
            G +P+ GI+  A+++ V + +  L IP  C   +  LM +CW ++PH+RP F  +L  L+  +Q+ L   PP
Sbjct:  112 GEVPYRGIDGLAVAYGVAVNKLTLPIPSTCPEPFAQLMAECWDQDPHERPSFGAVLSQLEALEQQGLAELPP 183          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: UPI0009076A0A (mitogen-activated protein kinase kinase kinase 11 n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=UPI0009076A0A)

HSP 1 Score: 56.2 bits (134), Expect = 2.150e-7
Identity = 25/72 (34.72%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGE-RLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQKELTGNPP 225
            G +P+ GI+  A+++ V + +  L IP  C   +  LM +CW ++PH+RP F  +L  L+  +Q+ L   PP
Sbjct:  226 GEVPYRGIDGLAVAYGVAVNKLTLPIPSTCPEPFAQLMAECWDQDPHERPSFGAVLSQLEALEQQGLAELPP 297          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: UPI0019298FD1 (LOW QUALITY PROTEIN: probable serine/threonine-protein kinase SIS8 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0019298FD1)

HSP 1 Score: 56.2 bits (134), Expect = 2.220e-7
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 LPWAGINTQAISFTVGM-GERLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQ 201
            +PW+G+N   +   VG    RL+IP   D     L++DCWQ EP+QRP F +++  LK+ ++
Sbjct:  935 MPWSGLNPMQVVGAVGFQNRRLEIPEEVDPMVAQLISDCWQSEPNQRPSFAQLMSPLKQLRR 996          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: A0A2T7NZH5_POMCA (Mitogen-activated protein kinase kinase kinase n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NZH5_POMCA)

HSP 1 Score: 55.8 bits (133), Expect = 3.040e-7
Identity = 24/71 (33.80%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGE-RLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQKELTGNP 222
            G  P+ GI+   +++ V + +  L IP  C S +  LM+DCW +EPH+RP F  I++ L++         P
Sbjct:  312 GETPYKGIDALGVAYGVAINKLTLPIPSTCPSMFSKLMSDCWAQEPHERPTFQNIIKRLEEIATSPFVTTP 382          
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Match: A0A210PUV3_MIZYE (Mitogen-activated protein kinase kinase kinase 9 n=4 Tax=Pectinidae TaxID=6566 RepID=A0A210PUV3_MIZYE)

HSP 1 Score: 55.5 bits (132), Expect = 4.150e-7
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1
Query:   13 GVLPWAGINTQAISFTVGMGE-RLKIPLGCDSFYRNLMTDCWQEEPHQRPKFDRILRVLKKTKQKELTGNP 222
            G  P+ GI+   +++ V + +  L IP  C   +  LM+DCW +EPHQRP F  IL  L+     E+  +P
Sbjct:  308 GETPYKGIDALGVAYGVAVNKLTLPIPSTCPGLFSKLMSDCWHQEPHQRPTFAEILHRLR-----EIASSP 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6060.13741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M7K954_VARDE1.830e-841.67Protein kinase domain-containing protein n=6 Tax=V... [more]
A0A0B6YSJ3_9EUPU3.550e-836.62PK_Tyr_Ser-Thr domain-containing protein (Fragment... [more]
UPI001455CE216.450e-835.62deleted in malignant brain tumors 1 protein-like n... [more]
UPI0009E50E848.680e-840.68mitogen-activated protein kinase kinase kinase 10-... [more]
A0A151NR26_ALLMI1.940e-734.72Mitogen-activated protein kinase kinase kinase 11 ... [more]
A0A1U7S8Q1_ALLSI2.130e-734.72mitogen-activated protein kinase kinase kinase 11 ... [more]
UPI0009076A0A2.150e-734.72mitogen-activated protein kinase kinase kinase 11 ... [more]
UPI0019298FD12.220e-738.71LOW QUALITY PROTEIN: probable serine/threonine-pro... [more]
A0A2T7NZH5_POMCA3.040e-733.80Mitogen-activated protein kinase kinase kinase n=1... [more]
A0A210PUV3_MIZYE4.150e-736.62Mitogen-activated protein kinase kinase kinase 9 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6060contigH-paniculata_contig6060:4170..4907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7FKP6
Preferred nameRCCD1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.0521433-CDS-H-paniculata_contig6060:4169..42901622930676.0521433-CDS-H-paniculata_contig6060:4169..4290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 4170..4290 -
1691481401.6030314-CDS-H-paniculata_contig6060:4169..42901691481401.6030314-CDS-H-paniculata_contig6060:4169..4290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 4170..4290 -
1622930676.071944-CDS-H-paniculata_contig6060:4794..49071622930676.071944-CDS-H-paniculata_contig6060:4794..4907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 4795..4907 -
1691481401.6129587-CDS-H-paniculata_contig6060:4794..49071691481401.6129587-CDS-H-paniculata_contig6060:4794..4907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 4795..4907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6060.13741.1prot_H-paniculata_contig6060.13741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6060 4170..4907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6060.13741.1

>prot_H-paniculata_contig6060.13741.1 ID=prot_H-paniculata_contig6060.13741.1|Name=mRNA_H-paniculata_contig6060.13741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
LCSNGVLPWAGINTQAISFTVGMGERLKIPLGCDSFYRNLMTDCWQEEPH
QRPKFDRILRVLKKTKQKELTGNPPYA*
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mRNA from alignment at H-paniculata_contig6060:4170..4907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6060.13741.1 ID=mRNA_H-paniculata_contig6060.13741.1|Name=mRNA_H-paniculata_contig6060.13741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at H-paniculata_contig6060:4170..4907- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCAGCAATGGCGTTCTACCGTGGGCGGGGATTAACACGCAAGCGAT TTCGTTTACCGTGGGCATGGGCGAGAGACTCAAGATCCCACTGGGGTGCG ACAGTTTTTACAGGTATGTGACTGTGCGGCGTATCGTTTATTTTGTTCAG AGTTGCTCAACCGATTTGTATACAGCTTTTGGCGTCATCCTCTATAACCA AAAAACACCAAAATGTATCACCCTTCGCCGTCGGACAATTCGAACGTTCT TTCTGGACACATCCGCGGACTGGCGCCTAGCATTGACCTTTTTGACATTC CCGGTTTTTACTTTTAGCGTTATTGCTGTACCTCTCAGCAGAACTATCTG CATGCATACAGCTTCTGCATTAGAACAAATGCTGCTGGTTATGTTTGAGG CGTGTTGATTGAAATGGAGTACGAAAAGTACCGTTTCAGTGGGCGCTTGC CGCAGCCCAAGTACTTTTGTGTAGAAAACACGTCATTGGCCATTCTCACC GACCGCTGGATCTTCTACTTGTGCTATTTAGTTGAACTTTGTACCATTCT AGAACTCAAACCACGACCATTTGCGCCCTTGCGACACCGCCACTCCGCCG CTTTATTCGCCTCGCAGGAATCTAATGACAGATTGTTGGCAAGAAGAACC CCACCAGCGGCCAAAGTTTGATCGCATCCTTCGAGTGTTGAAAAAAACAA AGCAGAAGGAACTCACCGGAAACCCACCCTATGCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6060:4170..4907-

>mRNA_H-paniculata_contig6060.13741.1 ID=mRNA_H-paniculata_contig6060.13741.1|Name=mRNA_H-paniculata_contig6060.13741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig6060:4170..4907- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCAGCAATGGCGTTCTACCGTGGGCGGGGATTAACACGCAAGCGAT
TTCGTTTACCGTGGGCATGGGCGAGAGACTCAAGATCCCACTGGGGTGCG
ACAGTTTTTACAGCTGTGCAGCAATGGCGTTCTACCGTGGGCGGGGATTA
ACACGCAAGCGATTTCGTTTACCGTGGGCATGGGCGAGAGACTCAAGATC
CCACTGGGGTGCGACAGTTTTTACAGGAATCTAATGACAGATTGTTGGCA
AGAAGAACCCCACCAGCGGCCAAAGTTTGATCGCATCCTTCGAGTGTTGA
AAAAAACAAAGCAGAAGGAACTCACCGGAAACCCACCCTATGCTTAAGAA
TCTAATGACAGATTGTTGGCAAGAAGAACCCCACCAGCGGCCAAAGTTTG
ATCGCATCCTTCGAGTGTTGAAAAAAACAAAGCAGAAGGAACTCACCGGA
AACCCACCCTATGCTTAA
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