mRNA_H-paniculata_contig6060.13742.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6060.13742.1
Unique NamemRNA_H-paniculata_contig6060.13742.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6060.13742.1 vs. uniprot
Match: A0A6H5JPT1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.720e-15
Identity = 35/49 (71.43%), Postives = 44/49 (89.80%), Query Frame = 2 
Query:   56 STSKTLRELGKMQLDKLQVSREDITFLSERPFAVGSHSQVYRVVHEGVV 202
            S  KTLRELGK QLDKLQ+S+ED+T+ S+RPFA GS+S+VY+V+HEGVV
Sbjct:  742 SNGKTLRELGKEQLDKLQISKEDVTYASKRPFASGSYSEVYQVIHEGVV 790
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BLAST of mRNA_H-paniculata_contig6060.13742.1 vs. uniprot
Match: D7FKP6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP6_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.840e-13
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 2 
Query:   56 STSKTLRELGKMQLDKLQVSREDITFLSERPFAVGSHSQVYRVVHEGVV 202
            S  KTLRELGK QL KLQ+S++D+T+ S+RPFA GS+S+VY+V+HEGVV
Sbjct:  806 SNGKTLRELGKEQLYKLQISKDDVTYASKRPFASGSYSEVYQVIHEGVV 854
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6060.13742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPT1_9PHAE6.720e-1571.43Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FKP6_ECTSI2.840e-1367.35Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6060contigH-paniculata_contig6060:10319..12495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size205
Cds size204
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6060.13742.1prot_H-paniculata_contig6060.13742.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6060 10319..12495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930675.9683208-CDS-H-paniculata_contig6060:10318..103501622930675.9683208-CDS-H-paniculata_contig6060:10318..10350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 10319..10350 -
1691481401.5704532-CDS-H-paniculata_contig6060:10318..103501691481401.5704532-CDS-H-paniculata_contig6060:10318..10350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 10319..10350 -
1622930675.9881392-CDS-H-paniculata_contig6060:11823..119281622930675.9881392-CDS-H-paniculata_contig6060:11823..11928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 11824..11928 -
1691481401.5829554-CDS-H-paniculata_contig6060:11823..119281691481401.5829554-CDS-H-paniculata_contig6060:11823..11928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 11824..11928 -
1622930676.005476-CDS-H-paniculata_contig6060:12428..124951622930676.005476-CDS-H-paniculata_contig6060:12428..12495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 12429..12495 -
1691481401.5916786-CDS-H-paniculata_contig6060:12428..124951691481401.5916786-CDS-H-paniculata_contig6060:12428..12495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6060 12429..12495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6060.13742.1

>prot_H-paniculata_contig6060.13742.1 ID=prot_H-paniculata_contig6060.13742.1|Name=mRNA_H-paniculata_contig6060.13742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
GSRAVHHDERCEGATSDRVHFKDIAGARKDAAGQAAGLEGRHHISQREAF
RRGLAFAGVSSRTRRRR*
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mRNA from alignment at H-paniculata_contig6060:10319..12495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6060.13742.1 ID=mRNA_H-paniculata_contig6060.13742.1|Name=mRNA_H-paniculata_contig6060.13742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2177bp|location=Sequence derived from alignment at H-paniculata_contig6060:10319..12495- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTCTAGGGCAGTTCATCATGACGAAAGATGCGAAGGCGCTACCTCTGA
CAGGGTCCACTTCAAAGGCAATTAAAGCATCGAGGGTCGTGCTAACAACT
CAACAACACGTGAAACTAGCCTGAAGCAGGGAGATTGGCTCCTTGACCGT
CAAAGCGAAGGGCTTCGTGCAGTTGCATTTCCCTTTCCATTAAGTAGCCA
TGTGTGTGTGCTTTTCGCATTAAATTGTGAATGTATACGATTGCTCGTTG
AGTACAGATGACAAACGTATCGCGGTCTGAGGTTTGAACACGAATACTTC
GAACAAACGGGGTCGATGAAAAATAGAAGATTATCGCCTGAGCCGCCTAC
GATACCATTGCTCCGAGCAATGGCGAACAAATAAACGGGGACCAACACTT
TGTTGTACGTACCATAATCAATTCCGCACATGCTGAAACTCGGACGAATA
CTTGATAACTTTAGTCTAAACCGTTCAGAGTATCCACATTCGTCGACAAA
GAATTGTTGAAATGTTGAGAATCCTTTTTCGTTGTTTCGTCTGTTTTTTT
CGGCACTGATGCTGCAGACATTGCGGGAGCTAGGAAAGATGCAGCTGGAC
AAGCTGCAGGTCTCGAGGGAAGACATCACATTTCTCAGCGAGAGGCCTTT
CGCCGTGGGCTCGCATTCGCAGGTTGCGTTGAAACTGGTTTTGGCGCCGT
ACGTGTCTTTGAAGATGTATCTATTTTCGAGGCTGTATCCGCATTTGACG
TTGTGCCTGTGATTGACGAGATACATGTCGTAGCACTGTTTCTCTTTATA
TCGTTGTGCTCGCGTCATTTTTGGTGGAGAAGGAGAGCTGGCAGTGTTGG
TGTAATGGCTGAAACATGGCACTGGAACAATGCACAAGCTGGTCGCACGA
AGAGCCGTAACGTTCGTTCCTGAAACTTGTGCTAGTTTTGATGAGTTGGA
AGATAACGCGTTTCACAGATGTCAGATGTTCAGATGTTGCAAATGTCAAT
GTGGAGCATACACCATTCCCCACGTTTTACTCATAATTCGTCCCGAGCAA
CACCGGCCGAATATGGCAACCGTTGCGCACGGCACAAACTTTGCTCCGTA
TCTACTCCAGAATGATTTAGGTTCCTGTATTCGCTGATATGACTCGTTCA
TATAAGGAAGCATCTGAATGGATCTGGACCTCTCTTCTCTCCCTCTCTCA
AAAGGCTACTGTGAAAAAAATCACTAACTCGCAGCTGAAGTCGACGGTGG
TCGTCGTGAAATCCGGCGAAACATATTTTGAACATAGGTAATTCTCCATA
GTCCGTTTTAGCCAAATCACTTGACGATCACGACCGATCTCGACGAGGAG
AAACAGTGAAGGTTTTTCGCACCGAAGTTCAAACACTGGTGCAATTATTT
AGCTCCTCACCGTTGGAATTCAGCGCTCGAAGTCGAAAATCACTGTGGAT
AGATTCAATTTGAAACAAGCGCCAGCTTATGTTCCTTTGTGGTCACTTTT
TCCCCTTTTCTGAAATGTTTATGGTACGAAATGTACAATGTGGCCAACAG
CTCGTGACGATTGTGTGTGTGCTATGTTTCGATTTGCTGACTGGCGTTAG
CTCGATCACAACAAAATAGTTGCTGTGATCTGAGAATTCTGCAATGATTC
ACCGGGTTGCCGGCGTTACTGGTCCATCTAATAACGTAGTACCAGCAGTC
GAACGTTGATTTCTTGAAGAGTGGTGATTCGAGAACGAACTAGGCCCATC
CCTCATTGTTAGTTGTTGCTTGTCATAACACAAAATGCAATTGCTGTCAA
TAGAGGAGTAGAAGATTCGACAGAAACTGCCAAATATTCGAAACAAGCTG
GTCGTTATATTCCACTCAAGCAATACACATGCGAAATTATGTTTAGATTC
TACAGGGTGTTGTGTTGTTGTTAATAGTTGCTTTTGGTTTGCCCACGACT
ACATCATGAAAGCTCTCGAACATTGAGCGTGTAATACAACCCTCCCGAGA
AATTTCGACAAAATCTTGTTACCCACATAACGAAAACACGGATAATATAT
GAAAACTAAGTTTCGAAACTGATATCACACGAGACCTCACCTTCACCTAG
TTGATGTATCTCGAATTTGAATGCACACATGATGGCACACAACAGGTGTA
TCGAGTCGTACACGAAGGCGTCGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6060:10319..12495-

>mRNA_H-paniculata_contig6060.13742.1 ID=mRNA_H-paniculata_contig6060.13742.1|Name=mRNA_H-paniculata_contig6060.13742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig6060:10319..12495- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTCTAGGGCAGTTCATCATGACGAAAGATGCGAAGGCGCTACCTCTGA
CAGGGTCCACTTCAAAGGGCTCTAGGGCAGTTCATCATGACGAAAGATGC
GAAGGCGCTACCTCTGACAGGGTCCACTTCAAAGACATTGCGGGAGCTAG
GAAAGATGCAGCTGGACAAGCTGCAGGTCTCGAGGGAAGACATCACATTT
CTCAGCGAGAGGCCTTTCGCCGTGGGCTCGCATTCGCAGACATTGCGGGA
GCTAGGAAAGATGCAGCTGGACAAGCTGCAGGTCTCGAGGGAAGACATCA
CATTTCTCAGCGAGAGGCCTTTCGCCGTGGGCTCGCATTCGCAGGTGTAT
CGAGTCGTACACGAAGGCGTCGTTAAGTGTATCGAGTCGTACACGAAGGC
GTCGTTAA
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