mRNA_H-paniculata_contig606.13740.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig606.13740.1
Unique NamemRNA_H-paniculata_contig606.13740.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: D7FPM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM0_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 7.410e-102
Identity = 155/165 (93.94%), Postives = 164/165 (99.39%), Query Frame = 1 
Query:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQ+WKGLPITVKLTI+NRQATVSVIPAASSLILKALNEPERDRKKVK+IKH+GNVTLDQVI+IAR+MRERSMAR+LAGTVKEMLGTCNSVGCTVNG SPRDIQSGISEGEI+IP+E
Sbjct:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 165
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: A0A835YTI9_9STRA (Ribosomal protein L11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI9_9STRA)

HSP 1 Score: 279 bits (713), Expect = 1.800e-89
Identity = 137/165 (83.03%), Postives = 156/165 (94.55%), Query Frame = 1 
Query:    1 MGPPPP-TGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPE 492
            MGPPPP + E +YV+LRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQK+T DWKGLPITVKLTIVNRQATVSVIP+ASSLILKALNEPERDRKKVKH+KH+GNVTLDQ+ID+AR+MR RSMAR+LAGTVKE+LGT  SVGCTVNG++PRD+Q  I++GEI+IP+
Sbjct:    1 MGPPPPASAEEKYVVLRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKSTMDWKGLPITVKLTIVNRQATVSVIPSASSLILKALNEPERDRKKVKHVKHDGNVTLDQIIDVARVMRARSMARTLAGTVKEVLGTAFSVGCTVNGMAPRDVQKAITDGEIVIPD 165
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: A0A7S2UAZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAZ7_9STRA)

HSP 1 Score: 259 bits (663), Expect = 5.600e-82
Identity = 122/165 (73.94%), Postives = 151/165 (91.52%), Query Frame = 1 
Query:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            MGPPP + + Q VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T DWKG+ +TVKLT+VNRQATV++IPAASSLI+KALNEP RDRKKVK++ HNGN+TL+QVIDIA++MRERSMAR L+GTVKE+LGTCNS+GCTVNG SPRDIQ+GI +GE++IP+E
Sbjct:    1 MGPPP-SNDVQIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGMNVTVKLTVVNRQATVTMIPAASSLIMKALNEPVRDRKKVKNVVHNGNITLEQVIDIAKVMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVVIPDE 164
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: B8BTS3_THAPS (RL12, ribosomal protein 11 60S large ribosomal subunit n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8BTS3_THAPS)

HSP 1 Score: 251 bits (642), Expect = 8.000e-79
Identity = 120/161 (74.53%), Postives = 145/161 (90.06%), Query Frame = 1 
Query:   13 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            PP+ + + VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T DWKGL +TVKLT+VNRQATVS+IP+ASSL++KALNEP RDRKKVK++ HNGN+TLDQVIDIAR MRERSMA+ LAGTVKE+LGT NS+GCTVNG SPRDIQ+GI +GE+ IPEE
Sbjct:    4 PPSDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVVHNGNITLDQVIDIARQMRERSMAKKLAGTVKEILGTANSIGCTVNGESPRDIQAGIDDGEVEIPEE 164
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: A0A7R9U1B9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B9_9STRA)

HSP 1 Score: 251 bits (640), Expect = 3.360e-78
Identity = 119/165 (72.12%), Postives = 145/165 (87.88%), Query Frame = 1 
Query:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            MGPPPP GE + VI+RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+  T DWKGL +TVKL +VNRQATVSVIP++SSL++KALNEP RDRKKVKH+ H+GN+TLDQVID+ARIMRERSMAR++ GTVKE+LGTC S+GCTVNG  P+ +Q  I++GE+ I +E
Sbjct:   22 MGPPPPAGEEKVVIMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKAATMDWKGLAVTVKLVVVNRQATVSVIPSSSSLVMKALNEPPRDRKKVKHVVHDGNITLDQVIDVARIMRERSMARTMGGTVKEILGTCVSIGCTVNGEHPKTLQQQITDGELEIADE 186
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: A0A7S1XKH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKH5_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.690e-77
Identity = 118/161 (73.29%), Postives = 144/161 (89.44%), Query Frame = 1 
Query:   13 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            PP GE + V++RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+K T DWKGL +TVKL +VNRQATVSVIP+ASSL++KALNEP RDRKKVKH+ H+GN+TLDQVID+AR+MRERSMAR L+GTVKE+LGTC S+GC+VNG +PR +Q  I++GE+ IPEE
Sbjct:   33 PPAGEEKIVVMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKKATMDWKGLSVTVKLVVVNRQATVSVIPSASSLVMKALNEPVRDRKKVKHVVHDGNITLDQVIDVARVMRERSMARELSGTVKEILGTCVSIGCSVNGENPRTLQQQITDGELEIPEE 193
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: K0TFA0_THAOC (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=K0TFA0_THAOC)

HSP 1 Score: 246 bits (628), Expect = 1.010e-76
Identity = 118/161 (73.29%), Postives = 144/161 (89.44%), Query Frame = 1 
Query:   13 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            PP+ + + VI+R +GGEV   +ALAPK+GPLGLSPKK+GEDI K T+DWKGL +TVKLT+VNRQA+VS+IP++SSLI+KALNEP RDRKKVK+I HNGN+TLDQVIDIA+ MRERSMA+ L+GTVKE+LGTCNS+GCTVNG SPRDIQ+GI +GE+ IPEE
Sbjct:    4 PPSDDVKIVIMRTVGGEVAPASALAPKIGPLGLSPKKVGEDIMKATKDWKGLNVTVKLTVVNRQASVSMIPSSSSLIMKALNEPYRDRKKVKNIVHNGNLTLDQVIDIAKQMRERSMAKKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEE 164
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: A0A7S1E7R7_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E7R7_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.180e-76
Identity = 117/164 (71.34%), Postives = 146/164 (89.02%), Query Frame = 1 
Query:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPE 492
            MGPPP + + + VI+R +GGE+G+ ++LAPK+GPLGLSPKK+GEDIQK T DWKGL +TVKLT+VNRQATVS+IP+ASSL++KALNEP RDRKKVK++KH+GN+ LDQ+I+IAR MRERSMA+ LAGTVKE+LGTCNS+GCTVNG SPRD+Q  I +GE+ IPE
Sbjct:   16 MGPPP-SDDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVKHDGNIALDQIIEIARQMRERSMAKKLAGTVKEILGTCNSIGCTVNGESPRDLQQMIDDGEVEIPE 178
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BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: A0A7S3PV60_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV60_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.850e-76
Identity = 118/165 (71.52%), Postives = 146/165 (88.48%), Query Frame = 1 
Query:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            MGPPP + E + VI+R +GGEV   ++LAPK+GPLGLSPKK+GEDIQK T+DWKGL +TVKLT+VNRQATV++IP++SSLI+KALNEP RDRKKVK++ H+GN+TLDQVI+IAR MR+RS A+ L+GTVKEMLGTCNS+GCTVNG SPRD+Q+GI +GEI IP E
Sbjct:    1 MGPPP-SDEVKIVIMRTVGGEVAAASSLAPKIGPLGLSPKKVGEDIQKATKDWKGLSVTVKLTVVNRQATVTMIPSSSSLIMKALNEPVRDRKKVKNVTHDGNLTLDQVIEIARAMRDRSCAKELSGTVKEMLGTCNSIGCTVNGDSPRDVQAGIDDGEIEIPAE 164
[Close]
BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Match: A0A7S1BV82_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BV82_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.850e-76
Identity = 119/165 (72.12%), Postives = 145/165 (87.88%), Query Frame = 1 
Query:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHNGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRDIQSGISEGEIIIPEE 495
            MGPPP + + + VI+R +GGEVG  ++LAPK+GPLGLSPKK+GEDIQK T DWKGL +TVKLT+VNRQATVS+IP+ASSL++KALNEP RDRKK K+I HNGN+TLDQVIDIAR MRERSMA+ L+GTVKE+LGT NS+GCTVNG +PRD+QS I +GE+ IP+E
Sbjct:    1 MGPPP-SDDVKIVIMRTVGGEVGAASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKEKNIVHNGNITLDQVIDIARQMRERSMAKELSGTVKEILGTANSIGCTVNGENPRDVQSAIDDGEVEIPDE 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig606.13740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPM0_ECTSI7.410e-10293.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTI9_9STRA1.800e-8983.03Ribosomal protein L11 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2UAZ7_9STRA5.600e-8273.94Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8BTS3_THAPS8.000e-7974.53RL12, ribosomal protein 11 60S large ribosomal sub... [more]
A0A7R9U1B9_9STRA3.360e-7872.12Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XKH5_9STRA1.690e-7773.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K0TFA0_THAOC1.010e-7673.29Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A7S1E7R7_9STRA1.180e-7671.34Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3PV60_9STRA2.850e-7671.52Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1BV82_9STRA2.850e-7672.12Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig606contigH-paniculata_contig606:29170..34053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.0
Seed ortholog evalue1.7e-82
Seed eggNOG ortholog2880.D7FPM0
Preferred namerpl12
KEGG koko:K02870
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000381,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0015934,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0080@1,KOG0886@2759
Ec32 ortholog description60S ribosomal protein L12
Ec32 orthologEc-16_001460.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size1427
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig606.13740.1prot_H-paniculata_contig606.13740.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig606 29170..33124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930675.7996905-CDS-H-paniculata_contig606:29169..291911622930675.7996905-CDS-H-paniculata_contig606:29169..29191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 29170..29191 +
1691481401.489856-CDS-H-paniculata_contig606:29169..291911691481401.489856-CDS-H-paniculata_contig606:29169..29191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 29170..29191 +
1622930675.8170633-CDS-H-paniculata_contig606:30561..307431622930675.8170633-CDS-H-paniculata_contig606:30561..30743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 30562..30743 +
1691481401.5079987-CDS-H-paniculata_contig606:30561..307431691481401.5079987-CDS-H-paniculata_contig606:30561..30743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 30562..30743 +
1622930675.8333383-CDS-H-paniculata_contig606:31234..313121622930675.8333383-CDS-H-paniculata_contig606:31234..31312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 31235..31312 +
1691481401.5181692-CDS-H-paniculata_contig606:31234..313121691481401.5181692-CDS-H-paniculata_contig606:31234..31312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 31235..31312 +
1622930675.855382-CDS-H-paniculata_contig606:32483..326571622930675.855382-CDS-H-paniculata_contig606:32483..32657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 32484..32657 +
1691481401.5314274-CDS-H-paniculata_contig606:32483..326571691481401.5314274-CDS-H-paniculata_contig606:32483..32657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 32484..32657 +
1622930675.9036233-CDS-H-paniculata_contig606:33082..331241622930675.9036233-CDS-H-paniculata_contig606:33082..33124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 33083..33124 +
1691481401.5476468-CDS-H-paniculata_contig606:33082..331241691481401.5476468-CDS-H-paniculata_contig606:33082..33124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig606 33083..33124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930675.9170904-UTR-H-paniculata_contig606:33124..340531622930675.9170904-UTR-H-paniculata_contig606:33124..34053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig606 33125..34053 +
1691481401.5584855-UTR-H-paniculata_contig606:33124..340531691481401.5584855-UTR-H-paniculata_contig606:33124..34053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig606 33125..34053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig606.13740.1

>prot_H-paniculata_contig606.13740.1 ID=prot_H-paniculata_contig606.13740.1|Name=mRNA_H-paniculata_contig606.13740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNT
QDWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKH
NGNVTLDQVIDIARIMRERSMARSLAGTVKEMLGTCNSVGCTVNGVSPRD
IQSGISEGEIIIPEE*
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mRNA from alignment at H-paniculata_contig606:29170..34053+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig606.13740.1 ID=mRNA_H-paniculata_contig606.13740.1|Name=mRNA_H-paniculata_contig606.13740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4884bp|location=Sequence derived from alignment at H-paniculata_contig606:29170..34053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCCCCCTCCGCCAACTGGTGAGCATGATTGTGGTTTTGCCAAGAA
AGTCCCACGTGCTTCTTTACGAAAAAATCAAGCGTGTGTGTGACCAGCAC
CGCTGAGGTTGGTTCCGGCTGTGTGCGTTTGTGGTGATGAGAGGCTGGAC
TGGCCATGAGTGTGGTGATGAGAGGCTGGACTGGCCATGAGTGTGGTGAT
TATGCACCGCTGGCTGAGTCCTGGTACTCTTTCTTCTGTGTCGTATATTT
TCATTGTCAGCAACGTTTTATGTTGGAAAGCTGCGTAGCTCAAGGTTGTT
GGATGTGTTTTGATGTAGTAGAGAAGTCCGAATCTCGTCTCCAGCACTCT
GTGCAATTTAGTGTAGGTGATGTTTTACAGATGAAGTTTTCATATGCAAT
CGTCTTGTACCTCGTCGGGAAGGTATTTGGTCAGCCTATAATCGGAAAGG
CTGCCGCTCGCTCTACGACGTTTGCAGCAAGTCGAGACATGCGTATGCAT
ACTGCGAACAGTACAGGCTCTTGCGAAAGCTTCATTTGCAGAGTGATTCA
ACGTCGAAGATGAGTTTCACGTTGCTGTTAAAGAAGGTATCAGTGTGAAG
GTGTTCAGGGTTTGTTGAGTGCGGGTTATACTCCTTCCTTCTCAACGATG
GACAGTCAGCGCTTCCTGCGACTCTTCCCCAGCTTTGATGGAAATTTGAA
AGCTCCATTCCGATTGGTTCACAGAGGAACCAAAAATCCTTCTTCCGGTC
TCGGGTGGCGGTTGAGAAGGTCACTTGAGCTCCTTCGTTGCTCCCATAGA
TCTGGCAGTATGTGTCATTAATAGAACTAGACATCAATCTTAGGGAGAGG
ATACCGATTATCAAGAAGTTCATGTACAGTACCTCGAATGTGTTGGCTTT
GAGAGAGAGCGAACCTCGAAACTGTTGTGTACACCTTTTCCACGATGTGA
TCTTCTGATCGATTGAAGACGAGGTCTGAAAACAGAAAATCGGTCGGGAT
TCTGCGATTTCAGTCCTTAGTGTCAAATCATATCCCCAGCACAGTCATTT
ATGGGTGGGCAGACGTTATCGCAAACTTGTTGTTCACCATTACCCATACC
TCGATGAAGATGTTGTCGGCAGCACGAAGTCCAAGATCGGTGGTGGAGTG
CTGAGTTTGTCAAGCACACACCCCTGCTTCCTGGCAGCTGACGCGGAATC
CTGATCGTGGCGCTAATCAGTGTTGAATGGCAGAGGAGGCCATCTAGGCG
GAGCCTTACACATGCATGTGTAGGTAGAATGAAGCTGCCTGGACTACGAA
AATATGGAGTGATGTGACGGATTGTGCCATCCAGAGTTGTCTACTGTTCC
ATTTAATCCACATTAATTGTATCGTCCTGACTCTGACTTCAGGTGAGGCA
CAGTATGTGATCCTTCGGGCGATCGGGGGTGAGGTAGGAAACACGGCCGC
TCTGGCCCCCAAGCTGGGACCTCTGGGTTTGTCCCCCAAGAAAATTGGAG
AGGACATCCAAAAAAACACCCAGGACTGGAAGGGGTTGCCCATCACTGTG
AAGCTGACCATCGTCAACCGTCAGGTCATTTGATTGGTCACAATTTGCAC
ATAGCTTGGTCGTGTGTATCAATTTGATTTCAGTAAGTATCATGACGTAT
ATGGACCCACGACCTCGTATAGGTCGAGATGCCTCTGACAATGCCTCGCC
ACGCCGCCCCATGCGTGGACGGGGGGTTGAGTTATGTCGATAACGAAGAG
GCTAGAATCAATCCGGGGGGGAGTCTTAACATTCGTTCGTCTGGCTCCCT
CGACCGGTCTTGGCCGTCCCAGACTTTCACTCCCGTGTCTGAGTGCGGAA
TGTACCTGGACAACATTTTTATAGTTTTTTTTTCTCATCTCTCCCCCTTT
GTGTGAGGGGATATGTAGGAGGTAAGTGGAGGTTTCATAGTTCAAGAGAG
GTAGGCTCATGCATATGTACACTGTGTTCGCCTTCAGCTTTTTTTTGTAT
GGGAATTATGTACGATTTTCCCGTAAGTGATGGCACTACCCGCTTGTGGC
TTTATTACCCGACAGGCGACTGTATCCGTGATCCCTGCCGCTTCTTCCCT
GATCCTGAAGGCACTTAACGAGCCGGAGCGGGACCGCAAAAAGGTACAGA
TCTTGGAAGTATTTTTTCCCTTCATGTTGTGAGCTTTATGACATCGAAAT
CCTTGAATTCTTTCATGAACTCTCAGAAATATTGGGTATTGTCAATAGTG
GAGTCCTTGAAATGTATCATGTTTTTCAAGTGAACCGCTATACCTGAAAC
ATATGCAAAATAATGAGGAAGCAGGAACAGTCCCTTCCATCCGTCAACGT
ACTTATACCTGTTGGATGCCGTGGCTTCGCCGGAAGCTTGTCGGATTTGT
CGGAGTTTAATGATCGAAGCAGATCACAAAAGGATGCAAGCAAGGCGACT
CGCGTAAGAATCATGGACACGTTGGGTGTCGAAAACATGTGGCAAAAGAA
CAGGGAATTTTATTCAGGGCATCGTCACCTGATTTCGTGAAGGCCGCCAT
TTGCGTTGAGACCTAGGTGTCAGTGCCCCCTAAAGGGCACCGTTGACCTC
CAACCTTGCTACTGATGGATTGTCATACATGGAGTAGAATCAACCTTTTG
CTGTGGAAGTAAAGATATTTTCTGTTTCATGCACTGGACTCCTCTCGATT
GAATCGTAGATATCTGGGTAGCTGAAACCTCATCAGCCACTGCGAGATTC
TTGGCGTCCATGTTCGTATTTTATGTTTAAAGACGGATGAAATTGAATTC
TCACATTAAACGTTTCATTACTCAAAATGGCCCATGAATGATCAAAACAG
TGCTTCGTCATTGTGTGCGTTACGACGTTGGGTAGGAATTTTTTCCGACA
GATGCACGTGGGAGGGACGTCATATTATCGTCAATTACAGCCAGATGCTC
TACATCAGTACTGGACCTCTTGCTCTTCATGACTATGTCCTTCGGCATAA
TGAAGTCGATCAGTAGTTCGTGGGTGATATTTTGAAGTCTTCACTTTGAT
TCTGGCCCAACGTTCGTGCGAGAAATACTCTAAACGCGGGCGAAATGTCT
TTTGAGAAAGTACATTGTAGGATCTACGTCGAATTCAACTTTGACGGAGT
GGTGCTGTTCTTCGCTGTGCGACAATAAAGGGAAATATCAGGGGTAGTGC
ATTTCTAATTTTTGTAAGGGTGTTCCTTTTGAACTGGACAAAGTGTGACG
ATCAAAGCCTGACACTCGTAAACCGGTTTTTCGTTACACGTGACATGGCT
TATTGCTGTATCAGGTGAAGCACATCAAGCACAACGGCAACGTTACGCTT
GACCAGGTGATCGACATCGCTCGCATCATGCGCGAGCGATCTATGGCCAG
GAGTCTAGCGGGGACAGTGAAGGAGATGCTTGGAACGTGCAACTCTGTCG
GTTGCACCGTCAATGGAGTTTCTCCTCGTGATATTCAGGTCAGGTTTTTC
GCGATCACCCATATCATGGCGGTGATATGTTGAATTTCTTGAACTAGTAG
CAAAGGCGATTGTGTAATGGCGAATGTCTTCTCTAATTTGGGTGTTACGA
ACACGTTCCTACTCACCTCACGTAAAGTACGAGGTGAAGAGGTGTGTTTG
ATATTGTGCGTCCCTGCTTCGTCCACACGACCAAGTTGAATGCCATCAAA
TTTGTTGAAACGTCAAATTGCTCGGTTGTGCATGTCTCGATTAAAGATGA
GTTTCCGGTACATGATGAAAGTGCTTATTCAATACACTCGCCGTTCCTCC
ACTGCCCCCTGAACGTTCACGTCTAAAACGCATGTGCAATCGGACCTACA
CACGGAATTGGCTACAACCAACGGCCGAAATGTGGACATCATGGAAAAAT
TAATGCAACACAGTCGGGCATCAGTGAAGGAGAGATCATCATCCCGGAAG
AGTAATCGGAGCGACGGTGGTGCCGTCGAATAACGAAGATTCCTTTATCC
TATGCTTAAATGAAAGCTTTTGTTCTGTCCTGTTTTCGAGTTGGGGGATT
GATGATCAGAGCGTGAAAAGGAATAAATTAGAGCACAAGCTCACATTTCG
TCAGAGAAAGATATTAGGTGAAGTTCTCCCTGATACCCCCCGAATATTTC
CGTATTTTCAAGTAATTAGTGAATACCCAATCGGTCACTTCATTCCAAGT
CTGGCCCTTGATTGTAAAAGTGCAGTGCTGATTCATAACGTCACACCCGA
TACCGGGCGGTTGAACCATCCACCCAAATACCGCCTCCTCTACAGTTGAC
AATCTACTCGAGGGGTGATCCGGTTGTCTGCTGGGAATCATGAATGCCGT
TCTTGGCAAATTGTAGATCTAAAGGTCTTGAATTTCAAGACGGCGAGGTC
AATGACATCGTCGCAAAATCAAGTTGATATTGACCCAATATATTCTGTCT
AGAACACAGTACACACGTGGATGAATATTTTGCGAGTTCATCTTGCGAAT
GTTACGTCAGCGTGGTGCGGGAGAATGAAGACGTGTATACGAGGTGTAAG
AACGTCATACCCTGTTGACCTCCACGAATGTACGAGCGAACTCGTAGGGT
AGTTGTGGGCTGAACATGACTGGAAATCTAGTCAGGGTTTCAGCCTAGCC
TTCCGGGGGTTAAAAAAAAAAAAAAACCCCTACACTGCCTCTTCGGTTCG
GCCGAACCGGGGCGGCGCCCACCTCACAGAGGAATAAATAACTATTCTGT
TACAGGAAATGTCGAAATACTTCGGTAGAAGTACTTGAGTATGGAAGTAT
CGGAAAAAAAAGTTTCGCCTTTCGGAGGATTAAAAGTCAAGAACGTCGAT
AACTGTATCATAGTTTTGATACAATAATCCCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig606:29170..34053+

>mRNA_H-paniculata_contig606.13740.1 ID=mRNA_H-paniculata_contig606.13740.1|Name=mRNA_H-paniculata_contig606.13740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig606:29170..34053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCCCCCTCCGCCAACTGATGGGCCCCCCTCCGCCAACTGGTGAGG
CACAGTATGTGATCCTTCGGGCGATCGGGGGTGAGGTAGGAAACACGGCC
GCTCTGGCCCCCAAGCTGGGACCTCTGGGTTTGTCCCCCAAGAAAATTGG
AGAGGACATCCAAAAAAACACCCAGGACTGGAAGGGGTTGCCCATCACTG
TGAAGCTGACCATCGTCAACCGTCAGGTGAGGCACAGTATGTGATCCTTC
GGGCGATCGGGGGTGAGGTAGGAAACACGGCCGCTCTGGCCCCCAAGCTG
GGACCTCTGGGTTTGTCCCCCAAGAAAATTGGAGAGGACATCCAAAAAAA
CACCCAGGACTGGAAGGGGTTGCCCATCACTGTGAAGCTGACCATCGTCA
ACCGTCAGGCGACTGTATCCGTGATCCCTGCCGCTTCTTCCCTGATCCTG
AAGGCACTTAACGAGCCGGAGCGGGACCGCAAAAAGGCGACTGTATCCGT
GATCCCTGCCGCTTCTTCCCTGATCCTGAAGGCACTTAACGAGCCGGAGC
GGGACCGCAAAAAGGTGAAGCACATCAAGCACAACGGCAACGTTACGCTT
GACCAGGTGATCGACATCGCTCGCATCATGCGCGAGCGATCTATGGCCAG
GAGTCTAGCGGGGACAGTGAAGGAGATGCTTGGAACGTGCAACTCTGTCG
GTTGCACCGTCAATGGAGTTTCTCCTCGTGATATTCAGGTGAAGCACATC
AAGCACAACGGCAACGTTACGCTTGACCAGGTGATCGACATCGCTCGCAT
CATGCGCGAGCGATCTATGGCCAGGAGTCTAGCGGGGACAGTGAAGGAGA
TGCTTGGAACGTGCAACTCTGTCGGTTGCACCGTCAATGGAGTTTCTCCT
CGTGATATTCAGTCGGGCATCAGTGAAGGAGAGATCATCATCCCGGAAGA
GTAATCGGGCATCAGTGAAGGAGAGATCATCATCCCGGAAGAGTAA
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