prot_H-paniculata_contig6059.13737.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6059.13737.1
Unique Nameprot_H-paniculata_contig6059.13737.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length82
Homology
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: D8LEI9_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.040e-18
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 0 
Query:    1 MDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVETRGCWKSTL 58
            +DL+  LDAP+L R+AC SRALYVF+HV++LWK L++QEM RRPGQ VETRG WK+TL
Sbjct:   55 LDLLCFLDAPALGRLACASRALYVFAHVEELWKTLVVQEMARRPGQGVETRGGWKTTL 112
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: A0A813ASK6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ASK6_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 3.110e-6
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0 
Query:    1 MDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVETRGCWKSTLLCLLVTPQTGHDARKHVPLRVR 80
            M L+   DA  LC+++  SR  YV++H+ DLW+ L+LQ    R G A    G WKS  +            R+H PL +R
Sbjct:   98 MGLLHYFDAEELCQLSAASRGSYVWAHLIDLWRALVLQ----RFGGAFVWAGDWKSAFVATATAACGRRAPRRHTPLPLR 173
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: A0A2B7XV37_9EURO (tRNA wybutosine-synthesizing protein 4 n=1 Tax=Helicocarpus griseus UAMH5409 TaxID=1447875 RepID=A0A2B7XV37_9EURO)

HSP 1 Score: 50.4 bits (119), Expect = 2.750e-5
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0 
Query:    3 LMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVETRGCWKSTLLCL----LVTPQTGH 69
            L+ CLD+ SL R+    +ALY F+H ++LWK L ++     P ++   RG W +T L L    + +P   H
Sbjct:   78 LLECLDSASLLRLGATCKALYAFTHAEELWKALFIEN----PPKSFTWRGTWHATYLNLPQSKVASPDCSH 144
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: A0A699ZHK3_HAELA (JmjC domain-containing protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZHK3_HAELA)

HSP 1 Score: 47.0 bits (110), Expect = 5.270e-5
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 0 
Query:    1 MDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQ 38
            ++L+G LDA SLC+++  SRALY F   +DLWK L+L+
Sbjct:   39 LELLGLLDAVSLCQLSQCSRALYCFCDAEDLWKALVLE 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEI9_ECTSI1.040e-1868.97JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A813ASK6_9DINO3.110e-636.25Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A2B7XV37_9EURO2.750e-535.21tRNA wybutosine-synthesizing protein 4 n=1 Tax=Hel... [more]
A0A699ZHK3_HAELA5.270e-552.63JmjC domain-containing protein (Fragment) n=2 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 1..69
e-value: 1.2E-6
score: 30.3
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 4..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6059contigH-paniculata_contig6059:2246..3166 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6059.13737.1mRNA_H-paniculata_contig6059.13737.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6059 2234..3498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6059.13737.1 ID=prot_H-paniculata_contig6059.13737.1|Name=mRNA_H-paniculata_contig6059.13737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVET
RGCWKSTLLCLLVTPQTGHDARKHVPLRVRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf