mRNA_H-paniculata_contig6059.13737.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6059.13737.1
Unique NamemRNA_H-paniculata_contig6059.13737.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: D8LEI9_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.950e-19
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 DEKIMDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVETRGCWKSTL 186
            DE+++DL+  LDAP+L R+AC SRALYVF+HV++LWK L++QEM RRPGQ VETRG WK+TL
Sbjct:   51 DERMLDLLCFLDAPALGRLACASRALYVFAHVEELWKTLVVQEMARRPGQGVETRGGWKTTL 112
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: A0A813ASK6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ASK6_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 2.920e-6
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 1 
Query:    1 DEKIMDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVETRGCWKSTLLCLLVTPQTGHDARKHVPLRVR 252
            D+ +M L+   DA  LC+++  SR  YV++H+ DLW+ L+LQ    R G A    G WKS  +            R+H PL +R
Sbjct:   94 DDAVMGLLHYFDAEELCQLSAASRGSYVWAHLIDLWRALVLQ----RFGGAFVWAGDWKSAFVATATAACGRRAPRRHTPLPLR 173
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: A0A2B7XV37_9EURO (tRNA wybutosine-synthesizing protein 4 n=1 Tax=Helicocarpus griseus UAMH5409 TaxID=1447875 RepID=A0A2B7XV37_9EURO)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-5
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:    1 DEKIMDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVETRGCWKSTLLCL----LVTPQTGH 219
            DE I+ L+ CLD+ SL R+    +ALY F+H ++LWK L ++     P ++   RG W +T L L    + +P   H
Sbjct:   72 DELIIMLLECLDSASLLRLGATCKALYAFTHAEELWKALFIEN----PPKSFTWRGTWHATYLNLPQSKVASPDCSH 144
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: A0A699ZHK3_HAELA (JmjC domain-containing protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZHK3_HAELA)

HSP 1 Score: 50.1 bits (118), Expect = 5.050e-5
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 DEKIMDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQ 126
            D  I++L+G LDA SLC+++  SRALY F   +DLWK L+L+
Sbjct:   35 DALILELLGLLDAVSLCQLSQCSRALYCFCDAEDLWKALVLE 76
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BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Match: A0A0D6R3N9_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R3N9_ARACU)

HSP 1 Score: 52.8 bits (125), Expect = 9.990e-5
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 DEKIMDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVETRGCWKSTLL 189
            DE ++++ G LDA  L R+A VS+A+YVFS+ D LW+ L+L  +          +G WKST +
Sbjct:   77 DETLVEIFGLLDAKDLGRLALVSKAMYVFSNQDSLWRALVLDHLKG----TFTFQGFWKSTYI 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6059.13737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEI9_ECTSI4.950e-1967.74JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A813ASK6_9DINO2.920e-635.71Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A2B7XV37_9EURO1.270e-536.36tRNA wybutosine-synthesizing protein 4 n=1 Tax=Hel... [more]
A0A699ZHK3_HAELA5.050e-552.38JmjC domain-containing protein (Fragment) n=2 Tax=... [more]
A0A0D6R3N9_ARACU9.990e-541.27Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6059contigH-paniculata_contig6059:2234..3498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue5.1e-16
Seed eggNOG ortholog2880.D8LEI9
KEGG koko:K11323
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0000987,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0010029,GO:0010030,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018193,GO:0018195,GO:0018216,GO:0019538,GO:0032259,GO:0034969,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043565,GO:0043985,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0051276,GO:0065007,GO:0071704,GO:0071840,GO:0097159,GO:1900140,GO:1901363,GO:1901564,GO:1990837,GO:2000026
EggNOG free text desc.peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
EggNOG OGsKOG2130@1,KOG2130@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size590
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6059.13737.1prot_H-paniculata_contig6059.13737.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6059 2246..3166 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930675.1297507-UTR-H-paniculata_contig6059:2233..22451622930675.1297507-UTR-H-paniculata_contig6059:2233..2245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6059 2234..2245 +
1691481401.100203-UTR-H-paniculata_contig6059:2233..22451691481401.100203-UTR-H-paniculata_contig6059:2233..2245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6059 2234..2245 +
1622930675.1713583-UTR-H-paniculata_contig6059:3166..34981622930675.1713583-UTR-H-paniculata_contig6059:3166..3498Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6059 3167..3498 +
1691481401.1310966-UTR-H-paniculata_contig6059:3166..34981691481401.1310966-UTR-H-paniculata_contig6059:3166..3498Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6059 3167..3498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930675.1435244-CDS-H-paniculata_contig6059:2245..23591622930675.1435244-CDS-H-paniculata_contig6059:2245..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6059 2246..2359 +
1691481401.1125338-CDS-H-paniculata_contig6059:2245..23591691481401.1125338-CDS-H-paniculata_contig6059:2245..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6059 2246..2359 +
1622930675.1575613-CDS-H-paniculata_contig6059:3034..31661622930675.1575613-CDS-H-paniculata_contig6059:3034..3166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6059 3035..3166 +
1691481401.1232963-CDS-H-paniculata_contig6059:3034..31661691481401.1232963-CDS-H-paniculata_contig6059:3034..3166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6059 3035..3166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6059.13737.1

>prot_H-paniculata_contig6059.13737.1 ID=prot_H-paniculata_contig6059.13737.1|Name=mRNA_H-paniculata_contig6059.13737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MDLMGCLDAPSLCRVACVSRALYVFSHVDDLWKGLLLQEMGRRPGQAVET
RGCWKSTLLCLLVTPQTGHDARKHVPLRVRE*
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mRNA from alignment at H-paniculata_contig6059:2234..3498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6059.13737.1 ID=mRNA_H-paniculata_contig6059.13737.1|Name=mRNA_H-paniculata_contig6059.13737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1265bp|location=Sequence derived from alignment at H-paniculata_contig6059:2234..3498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAGAAGATTATGGATTTAATGGGATGCCTGGACGCGCCGTCGCTCTG
CCGCGTCGCGTGCGTAAGCCGCGCTCTGTACGTGTTCTCTCATGTGGATG
ACCTTTGGAAAGGGCTTCTTCTGCAGGCAAGTGTGTTTCTTCTTGCAAGT
TTTGATGATCCGCGCACACGCGAATCCATCCTTGAGCTTTTCGTTTTGTA
GAGCTCGATGGCACTGCCTGTGCAAAAAAAAAAAAAGACAAAAGGAGGAC
CAAGCGGTTTCAGCAGATGCCACTGGTGTAACTAACGGCTGGGTATGTGA
AGCGAAACGCGAATAAGTCTTTCACGGTCTGGAGATGGGCGCCGGCAAGA
TGGAAAAAAAAAAAAAAAAGCTCGAGTCGGTTGGTTTCATCAAACCGGTG
TTTGAGGCAAATCGGTTCTTCTAACGTAAAAGTCGGGTCTAGAAATTATC
AGCAGGGTCTAGGGTAAACGCCCGTCCTCTCGAGGATGTACCGCTATGTG
ACATTAGCAGGCGCTTAACATGGTGCTGATATCTTGATGAATCGAGGGAG
TGGATAGTTGTCGATTGTGCAGGTGCCATTATCCGCACCTTGTCATACTC
CATTTGACAGGTTCGTGTACCCACCCAGTACAGTCGGTCACGTAAAAGGA
TGAGATGAGCTTGGGTCTACTGTAAGGTGTGACTCGCTCAGCGACGAACA
GCTGTGAGACGCTACAAGGACTGCAGTACATGCAAACCATGAGTATCCCC
CTTCTCCTCCGCCGCGCTCGCCGTTGGTTTTTGGTCGAACCCAAAGAATA
GGAGATGGGACGTCGTCCTGGACAGGCGGTGGAGACTCGAGGTTGTTGGA
AAAGCACGCTGCTGTGCCTTCTCGTGACGCCTCAAACGGGCCATGATGCG
AGAAAGCATGTCCCTCTCAGGGTGAGAGAGTAAGTCCTCCTCTGGAACAT
GACTGGTGCGCATTAGTATGCAATTATATGACCGAAAGCACTTTAGTAAG
CACGCAGGTAGGTTGGTGATGGTCGTTTTATGACCCCCTCAAAAGAAGAA
GCGAAACTCCTCGAGTGGAAGATGTACAATTTTGGAAACTTGGTGTGGGC
TTACTGTAGTCGACGACCTCTATAGTCGGGTCAGGCGACTGATGGTCGGT
TTCATTTTGAGAATTAGTCGACTTGGTTGAGTCAGCTTGGTTGATTAGAA
TGGGTTCCGATTACTGTAGTCGACTAACTCTATAGTCGGGTCAGGCGACT
GATGGTCGGTTTCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig6059:2234..3498+

>mRNA_H-paniculata_contig6059.13737.1 ID=mRNA_H-paniculata_contig6059.13737.1|Name=mRNA_H-paniculata_contig6059.13737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig6059:2234..3498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTAATGGGATGCCTGGACGCGCCGTCGCTCTGCCGCGTCGCGTG
CGTAAGCCGCGCTCTGTACGTGTTCTCTCATGTGGATGACCTTTGGAAAG
GGCTTCTTCTGCAGATGGATTTAATGGGATGCCTGGACGCGCCGTCGCTC
TGCCGCGTCGCGTGCGTAAGCCGCGCTCTGTACGTGTTCTCTCATGTGGA
TGACCTTTGGAAAGGGCTTCTTCTGCAGGAGATGGGACGTCGTCCTGGAC
AGGCGGTGGAGACTCGAGGTTGTTGGAAAAGCACGCTGCTGTGCCTTCTC
GTGACGCCTCAAACGGGCCATGATGCGAGAAAGCATGTCCCTCTCAGGGT
GAGAGAGTAAGAGATGGGACGTCGTCCTGGACAGGCGGTGGAGACTCGAG
GTTGTTGGAAAAGCACGCTGCTGTGCCTTCTCGTGACGCCTCAAACGGGC
CATGATGCGAGAAAGCATGTCCCTCTCAGGGTGAGAGAGTAA
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