mRNA_H-paniculata_contig6055.13735.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6055.13735.1
Unique NamemRNA_H-paniculata_contig6055.13735.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6055.13735.1 vs. uniprot
Match: D7FPT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT8_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.950e-27
Identity = 67/129 (51.94%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:  571 PTDRNSGAVGRPPQRSKADLSKLFATPEPVVGTGLPLA---RVFSRGAQSSFGSLPIFVAMCALCAKFAPAIALQSAVAWGVGRVVYWRSMREADVSQRLPAGLVGYMTMFLFLGGLSFLNGLKAIALL 948
            P    + A G  P+  KAD SKLFA PEP    G PLA   R F+  AQ S  S P+F+ M  L + F+P +A QS VAWG+GR  YW SMR  DVS+R+PAG VGY ++FL +GGL+F+NGLK I+ L
Sbjct:   89 PAAAGTAAWGAKPR--KADWSKLFAAPEPEPVQGRPLAVLSRSFAGAAQGSCYSSPLFLGMSLLLSLFSPIVAAQSLVAWGLGRATYWLSMRGEDVSRRMPAGFVGYASLFLVVGGLAFMNGLKGISAL 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6055.13735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPT8_ECTSI2.950e-2751.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6055contigH-paniculata_contig6055:895..3787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size2271
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6055.13735.1prot_H-paniculata_contig6055.13735.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6055 2212..3487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930674.915526-UTR-H-paniculata_contig6055:894..22111622930674.915526-UTR-H-paniculata_contig6055:894..2211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6055 895..2211 -
1691481400.9965599-UTR-H-paniculata_contig6055:894..22111691481400.9965599-UTR-H-paniculata_contig6055:894..2211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6055 895..2211 -
1622930674.961817-UTR-H-paniculata_contig6055:3487..37871622930674.961817-UTR-H-paniculata_contig6055:3487..3787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6055 3488..3787 -
1691481401.0224757-UTR-H-paniculata_contig6055:3487..37871691481401.0224757-UTR-H-paniculata_contig6055:3487..3787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6055 3488..3787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930674.933272-CDS-H-paniculata_contig6055:2211..26971622930674.933272-CDS-H-paniculata_contig6055:2211..2697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6055 2212..2697 -
1691481401.0048733-CDS-H-paniculata_contig6055:2211..26971691481401.0048733-CDS-H-paniculata_contig6055:2211..2697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6055 2212..2697 -
1622930674.9449112-CDS-H-paniculata_contig6055:3319..34871622930674.9449112-CDS-H-paniculata_contig6055:3319..3487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6055 3320..3487 -
1691481401.0124881-CDS-H-paniculata_contig6055:3319..34871691481401.0124881-CDS-H-paniculata_contig6055:3319..3487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6055 3320..3487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6055.13735.1

>prot_H-paniculata_contig6055.13735.1 ID=prot_H-paniculata_contig6055.13735.1|Name=mRNA_H-paniculata_contig6055.13735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MVSANSMNKNIMMVLLCVVALARTATSFVPIACPATTGAMATPRGQRTLV
FDNMQQVLVRTRGERSGSFGVTGDTTSTTTATFPSWLPSPPTDRNSGAVG
RPPQRSKADLSKLFATPEPVVGTGLPLARVFSRGAQSSFGSLPIFVAMCA
LCAKFAPAIALQSAVAWGVGRVVYWRSMREADVSQRLPAGLVGYMTMFLF
LGGLSFLNGLKAIALLA*
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mRNA from alignment at H-paniculata_contig6055:895..3787-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6055.13735.1 ID=mRNA_H-paniculata_contig6055.13735.1|Name=mRNA_H-paniculata_contig6055.13735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2893bp|location=Sequence derived from alignment at H-paniculata_contig6055:895..3787- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTAGTGTTGCTGTTGCTGACGACCTTGTTACAGTGCGTCATCACCCT
AAACCACTCACCGCCAACTGACACCTCAACAACCACGCAAGAGAGACTGC
GACACACCTTCTTCCCCTCCCCTCCCTCCCCTACACAACACACTCGACCA
GTAGATACCACACGCCAAGCCCCTTTTCTCAGCGTTTACATTGCGTGGTC
CTTCTGCTAGCACTACAGCAACCTTTGCTAGTCGGTCTGGTTTTTTCTTC
TTTAAGAGAAAACAACCGTTCGTTCAAGTTCATCGCTCGAGAAGGGAGGG
ATGGTGTCCGCAAACTCTATGAACAAGAACATAATGATGGTGCTGTTATG
CGTTGTGGCTCTCGCGAGGACCGCGACGTCGTTCGTGCCTATCGCATGCC
CAGCGACGACGGGTGCAATGGCCACTCCCCGTGGGCAGCGTACACTGGTA
TTTGACAACATGCAACAGGTGCGGCATACATGTCCGGTATTTTGAATATC
ATATGGTGGACTCTTTTTGTAGATGAATACCCCGTGTGTTGTATTTTTCG
AAGACAGCAAAGAAAAGCTTCGCGTTTTTCAGCCTTTTGGCAGTATTTTT
ATGATCAGTTCTCATGTGCTTTCCCGTAGTCTCCATGAGTGACTTCGTAC
TTTCAGCAAGCTGATGTTACTAGCCTACACGCTATTCGCCTTGTGGTCAA
ATGTTACGTGCGCTGTTCGGGGGTTAGAAGTTGCGGTCCCCAAACCGATA
AGCTGTTGTATGTTGTGGATTTGCAGTCCAAAAAGTATCACTGCTCATCC
AATTCTCGACCCCGTTGCTTGCTTTGGGCGATCGGATTGAAAAACGGGGT
GGTGCATTTTGGCGCAAAAATTATGGCAAGATTTTCACACGACGGTTTCA
CATACCGGCAGGCTCTCTACAAAATAGGAGCGGATTTGGTTATGCCAGCA
CAACACAATGGCCAACAACGGGAGAACCTGTTGTTCATTAATGCACATAT
GTGTCTGTTCACTTTCTCCATATAATTTCCTGACCAAACTCCTCCTCCTG
TCTCACATCCCTACTTGTTTTGCACACATCAATAACACAGGTCCTTGTAA
GGACACGCGGAGAGCGAAGTGGTTCCTTCGGTGTTACAGGGGACACCACC
TCCACAACAACCGCCACGTTTCCCTCATGGCTCCCATCACCCCCCACCGA
CCGCAACAGTGGCGCAGTCGGCCGCCCCCCGCAGCGCAGTAAAGCGGATT
TATCCAAGCTATTCGCGACTCCGGAACCCGTGGTGGGCACCGGCTTGCCG
CTGGCAAGGGTTTTCAGCAGGGGGGCTCAAAGCAGCTTTGGGTCTTTGCC
AATCTTCGTGGCTATGTGTGCTCTGTGCGCCAAGTTCGCACCTGCGATCG
CGCTGCAGTCGGCCGTCGCTTGGGGGGTTGGAAGGGTGGTGTACTGGCGG
TCGATGCGTGAGGCCGACGTGTCTCAGCGTCTGCCTGCTGGTCTGGTGGG
GTACATGACAATGTTTTTATTTTTGGGCGGGCTGTCATTTCTAAACGGGT
TGAAGGCGATTGCGCTTCTGGCTTAATATACCTCGAAGTAGAAAATAGGA
ACATATCCATCCACTCCTGCTGGATCCTTCGGTTCTTTTTTGTCGTGGCG
GACGAGCAATCTATCTGCCTGCTCTGGCCCAACTGTTATTTGTGTGTTTT
GGTTAGTCAACACTCTCACTATGATATGCGGTTCGATCTCTTCAGGCTGT
CGTAAAATTCCGGCAGTCTAAACGGACCCAGACGTTTTGGCGAGGTTGCT
ACCGCTGTCCGGTACGGGTTGGGTTATGGTGATGTGCAAGGGTGTCTAGT
GGGCGTGAACGTTTTCTTCAAGGTGGTCGGTTGATTTATTGAAAGTGGAG
CAAGCAGCTGAGCGCAGTATGTAAAGTGAACAGTATAAAAGATATGCCTA
AAATTGTTGGAAGTTAGTTTGTCTGTGTAGGTGCGTGTCTATTAATAGTG
TACAAGCGTTGGTTTTCAACGCATACCTCCGACGGTTTTTACTGTAATGC
TAAGTTCGTTCGTGATAATGTGTCGTGTGCCACGTGCCACGTGTGATCAA
AGTACTTCCTTCCTTAGTACATGTCACAGGATCTGTCTATTTATCCAAAT
GCACGTGCTAGATAGTCCAGCACAACCCACCTACCCTCTGTCATAGGTAG
TAAAACTTTAGGGTAGGTCGCTGCATTTTTTGCACCAACATAGATGGTTG
GATTGAGGGAACCTTTAAGTTGTATTGTGTTCTGTTGGTACTGTTTGTCT
TATCTCGAAATTTGGAGTGGTGAGTGGGATGTCAAGGTTCCAGTGCGGGC
TCTCTGACAGAATATATACATAGATATTTCGGGGAAGGCTTGACTTTTTT
GTGTGACTATGATGATGATGGTATCAGTTTATTGTAGAGGGAGGAGTATA
CGCCCGAAATTTGAGCGCAATTTCCTCAAGAGAAATTTCTTGAATTTTCA
AAATTTTTAGCCTCAAATTCCTTTGTAGTGATTCTACTGATTTCTTGTCC
CGAAGGTCCACACACTATGTTTTTTTTTCTTTTGAAATCATCATTTCACG
TGTGTCAGCACAGTGTTTCGTCAACGCTTTTCTTGTGTTTTTCACATGTA
AAAGGCATCAGCACCACGAAAGGGAGCGGTGTGTGGGGTAAATAGTATGC
ATGAGTCATGTTGTATATAGGTAAGGCTCTATCCATTTCAGGTTCGAGTA
ATCTGTGACAATGCTACTTGACGCAGGAGGACTTGTAAGACTCGACTCTG
TCGTTTTCAAGTATGCAAGATAAGAAGTCTCGTTGCCAATAAAAATATGG
TATTGGTGAAATGCAGAACGATTTTTTCGGAGAGCAAGCTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig6055:895..3787-

>mRNA_H-paniculata_contig6055.13735.1 ID=mRNA_H-paniculata_contig6055.13735.1|Name=mRNA_H-paniculata_contig6055.13735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig6055:895..3787- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCCGCAAACTCTATGAACAAGAACATAATGATGGTGCTGTTATG
CGTTGTGGCTCTCGCGAGGACCGCGACGTCGTTCGTGCCTATCGCATGCC
CAGCGACGACGGGTGCAATGGCCACTCCCCGTGGGCAGCGTACACTGGTA
TTTGACAACATGCAACAGATGGTGTCCGCAAACTCTATGAACAAGAACAT
AATGATGGTGCTGTTATGCGTTGTGGCTCTCGCGAGGACCGCGACGTCGT
TCGTGCCTATCGCATGCCCAGCGACGACGGGTGCAATGGCCACTCCCCGT
GGGCAGCGTACACTGGTATTTGACAACATGCAACAGGTCCTTGTAAGGAC
ACGCGGAGAGCGAAGTGGTTCCTTCGGTGTTACAGGGGACACCACCTCCA
CAACAACCGCCACGTTTCCCTCATGGCTCCCATCACCCCCCACCGACCGC
AACAGTGGCGCAGTCGGCCGCCCCCCGCAGCGCAGTAAAGCGGATTTATC
CAAGCTATTCGCGACTCCGGAACCCGTGGTGGGCACCGGCTTGCCGCTGG
CAAGGGTTTTCAGCAGGGGGGCTCAAAGCAGCTTTGGGTCTTTGCCAATC
TTCGTGGCTATGTGTGCTCTGTGCGCCAAGTTCGCACCTGCGATCGCGCT
GCAGTCGGCCGTCGCTTGGGGGGTTGGAAGGGTGGTGTACTGGCGGTCGA
TGCGTGAGGCCGACGTGTCTCAGCGTCTGCCTGCTGGTCTGGTGGGGTAC
ATGACAATGTTTTTATTTTTGGGCGGGCTGTCATTTCTAAACGGGTTGAA
GGCGATTGCGCTTCTGGCTTAAGTCCTTGTAAGGACACGCGGAGAGCGAA
GTGGTTCCTTCGGTGTTACAGGGGACACCACCTCCACAACAACCGCCACG
TTTCCCTCATGGCTCCCATCACCCCCCACCGACCGCAACAGTGGCGCAGT
CGGCCGCCCCCCGCAGCGCAGTAAAGCGGATTTATCCAAGCTATTCGCGA
CTCCGGAACCCGTGGTGGGCACCGGCTTGCCGCTGGCAAGGGTTTTCAGC
AGGGGGGCTCAAAGCAGCTTTGGGTCTTTGCCAATCTTCGTGGCTATGTG
TGCTCTGTGCGCCAAGTTCGCACCTGCGATCGCGCTGCAGTCGGCCGTCG
CTTGGGGGGTTGGAAGGGTGGTGTACTGGCGGTCGATGCGTGAGGCCGAC
GTGTCTCAGCGTCTGCCTGCTGGTCTGGTGGGGTACATGACAATGTTTTT
ATTTTTGGGCGGGCTGTCATTTCTAAACGGGTTGAAGGCGATTGCGCTTC
TGGCTTAA
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