mRNA_H-paniculata_contig60485.13728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60485.13728.1
Unique NamemRNA_H-paniculata_contig60485.13728.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.630e-26
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 156
            +CFANIICL TC G+PDE YCQIRCGDLFEN+AVGKFNACAVSKKNCVKQRQ
Sbjct:   80 KCFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQ 131
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: F0YAR5_AURAN (VDE domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAR5_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 3.060e-21
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQR 153
            +C AN++C+NTCTG+ DE+ CQIRCGDLFEND VG+FNACAVS+K CV QR
Sbjct:   18 KCAANLVCINTCTGRADESECQIRCGDLFENDVVGEFNACAVSQKKCVPQR 68
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.070e-20
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 156
            +C AN+ C+ TC G+PDE+ CQIRCGD+FEN+ VG+FNACAVS+K CV QRQ
Sbjct:   57 KCLANLACIQTCNGRPDESACQIRCGDIFENEVVGEFNACAVSQKRCVPQRQ 108
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A8J2WYQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYQ1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.120e-19
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 156
            +C AN++C+N+CTG+ DE+ CQIRCGDLFEN+ VG FNACAVS+K CV QRQ
Sbjct:   83 KCAANLVCINSCTGRKDESECQIRCGDLFENEVVGDFNACAVSQKKCVPQRQ 134
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2FLU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLU6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.060e-19
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCV 144
            +C AN++C+ TC G+ DEA CQI CGDLFEND VG+FNACAVS+K+CV
Sbjct:   66 KCAANLLCIQTCNGRADEAACQIGCGDLFENDVVGEFNACAVSQKSCV 113
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2XNS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-18
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 156
            +C AN+IC+NTC GK DE  CQI+CGD+FEND VG+FN CAVS  +CV QRQ
Sbjct:  144 KCLANVICINTCNGKADEMGCQIKCGDIFENDVVGEFNKCAVSDMDCVPQRQ 195
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A0G4F7V7_VITBC (VDE domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F7V7_VITBC)

HSP 1 Score: 85.5 bits (210), Expect = 2.840e-18
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQR 153
            RC A+I+CLN C  KPDEA CQ++CG+LFEN+ VGKFNACAVS K CV Q+
Sbjct:  105 RCAADIVCLNLCNNKPDEAECQVKCGNLFENEVVGKFNACAVSDKKCVDQK 155
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A7S2NVR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVR0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.810e-18
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 156
             C AN+IC+NTC G+PDE+ CQI CG+ FEN+ VG+FN CAVS  +CV Q+Q
Sbjct:  131 NCLANVICINTCNGRPDESECQIECGNTFENEVVGEFNKCAVSDMDCVPQKQ 182
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BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: A0A1B1Q5V0_9STRA (Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1B1Q5V0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.180e-17
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 156
            +C AN+ICLNTC  K DE  CQI CGDLFEN+ VG+FNACA+SKK CV +++
Sbjct:  132 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKE 183
[Close]
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Match: K8Z7V3_NANGC (Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7V3_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 1.250e-17
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQRQ 156
            +C AN+ICLNTC  K DE  CQI CGDLFEN+ VG+FNACA+SKK CV +++
Sbjct:  178 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKE 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60485.13728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE1.630e-2688.46VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
F0YAR5_AURAN3.060e-2172.55VDE domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S2SKA3_9STRA9.070e-2067.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2WYQ1_9STRA1.120e-1969.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FLU6_9STRA4.060e-1968.75Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2XNS0_9STRA1.720e-1867.31Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A0G4F7V7_VITBC2.840e-1868.63VDE domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S2NVR0_9STRA3.810e-1861.54Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1B1Q5V0_9STRA1.180e-1765.38Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis ... [more]
K8Z7V3_NANGC1.250e-1765.38Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60485contigH-paniculata_contig60485:284..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue3.4e-21
Seed eggNOG ortholog2880.D7FY70
Preferred nameVDE
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010028,GO:0015994,GO:0016108,GO:0016116,GO:0016122,GO:0016491,GO:0019752,GO:0019904,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0033013,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046422,GO:0046483,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564
EggNOG free text desc.violaxanthin de-epoxidase activity
EggNOG OGs28K1H@1,2QSFY@2759
EC1.23.5.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930674.0119312-CDS-H-paniculata_contig60485:283..4391622930674.0119312-CDS-H-paniculata_contig60485:283..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60485 284..439 +
1691481400.6170905-CDS-H-paniculata_contig60485:283..4391691481400.6170905-CDS-H-paniculata_contig60485:283..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60485 284..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60485.13728.1prot_H-paniculata_contig60485.13728.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60485 284..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60485.13728.1

>prot_H-paniculata_contig60485.13728.1 ID=prot_H-paniculata_contig60485.13728.1|Name=mRNA_H-paniculata_contig60485.13728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
RCFANIICLNTCTGKPDEAYCQIRCGDLFENDAVGKFNACAVSKKNCVKQ
RQ
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mRNA from alignment at H-paniculata_contig60485:284..439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60485.13728.1 ID=mRNA_H-paniculata_contig60485.13728.1|Name=mRNA_H-paniculata_contig60485.13728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig60485:284..439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCGCAAATATCATCTGCCTCAATACGTGCACCGGCAAGCCGGA
CGAGGCCTACTGCCAGATTCGATGCGGGGATCTGTTCGAGAACGACGCCG
TGGGCAAGTTCAACGCGTGCGCAGTTTCCAAGAAGAACTGCGTCAAGCAG
CGTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig60485:284..439+

>mRNA_H-paniculata_contig60485.13728.1 ID=mRNA_H-paniculata_contig60485.13728.1|Name=mRNA_H-paniculata_contig60485.13728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig60485:284..439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCGCAAATATCATCTGCCTCAATACGTGCACCGGCAAGCCGGA
CGAGGCCTACTGCCAGATTCGATGCGGGGATCTGTTCGAGAACGACGCCG
TGGGCAAGTTCAACGCGTGCGCAGTTTCCAAGAAGAACTGCGTCAAGCAG
CGTCAGAGGTGCTTCGCAAATATCATCTGCCTCAATACGTGCACCGGCAA
GCCGGACGAGGCCTACTGCCAGATTCGATGCGGGGATCTGTTCGAGAACG
ACGCCGTGGGCAAGTTCAACGCGTGCGCAGTTTCCAAGAAGAACTGCGTC
AAGCAGCGTCAG
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