mRNA_H-paniculata_contig60465.13726.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60465.13726.1
Unique NamemRNA_H-paniculata_contig60465.13726.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2JB11_ARAVE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2JB11_ARAVE)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-8
Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQE 168
            N ++ WT V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E
Sbjct:    9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDE 64          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 54.7 bits (130), Expect = 1.540e-8
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   10 RAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            + W  V+ P+  +++   +++KRKIG DGKVE YK RLVA G RQ + + Y+E  S
Sbjct:   12 QVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2HGG7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HGG7_ARAVE)

HSP 1 Score: 58.2 bits (139), Expect = 2.090e-8
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            N ++ WT+V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E  S
Sbjct:    2 NNRKVWTRVQKPNNNKIIGCRWVFTAKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 60          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2FX92_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FX92_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 5.360e-8
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            N ++ WT V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E  S
Sbjct:    9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2BMW9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BMW9_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 6.650e-8
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            N ++ WT V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E  S
Sbjct:    9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2N4U9_ARAVE (Retrovirus-related Pol polyprotein from transposon RE1 (Fragment) n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2N4U9_ARAVE)

HSP 1 Score: 53.9 bits (128), Expect = 1.740e-7
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            N ++ WT V+ P N  ++    ++  K  + GK+ +YK RLVA G +Q KGIHY E  S
Sbjct:    9 NNRKVWTLVQTPPNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQTKGIHYDEVFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE)

HSP 1 Score: 52.0 bits (123), Expect = 3.330e-7
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   10 RAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQ 144
            + W  VE PK+  VV +  ++KRKIGE+GKVE+YK RLVA G  Q
Sbjct:   12 QVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 54.7 bits (130), Expect = 3.500e-7
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   16 WTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            W  V RPKNT ++ +M +YK K   +G++ +YK RLVA+GN Q+ G+   E  S
Sbjct:  437 WCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFS 490          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A2I0JAE1_PUNGR (CCHC-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JAE1_PUNGR)

HSP 1 Score: 54.3 bits (129), Expect = 4.750e-7
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            ++ + W  V+  +  + +    ++KRKIG DGKVE YK RL A GNRQ +G+ Y+E  S
Sbjct:  314 SKNQVWDLVDPHEGIVPIENKWVFKRKIGADGKVETYKARLAATGNRQRQGVDYEETFS 372          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2WH23_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WH23_ARAVE)

HSP 1 Score: 53.1 bits (126), Expect = 1.170e-6
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
            N ++ W  V++P N  ++    ++  K  + GK+ +YK RLVA G +Q KGIHY E  S
Sbjct:    9 NNRKVWPLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQTKGIHYDEVFS 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A4Y2JB11_ARAVE1.410e-841.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0HGX5_PUNGR1.540e-844.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2HGG7_ARAVE2.090e-840.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2FX92_ARAVE5.360e-840.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2BMW9_ARAVE6.650e-840.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2N4U9_ARAVE1.740e-740.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7TFD5_AMPQE3.330e-755.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00090104FD3.500e-744.44uncharacterized protein LOC104779870 isoform X1 n=... [more]
A0A2I0JAE1_PUNGR4.750e-742.37CCHC-type domain-containing protein n=1 Tax=Punica... [more]
A0A4Y2WH23_ARAVE1.170e-638.98Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60465contigH-paniculata_contig60465:743..919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.8026693-CDS-H-paniculata_contig60465:742..9191622930673.8026693-CDS-H-paniculata_contig60465:742..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60465 743..919 +
1691481400.5375824-CDS-H-paniculata_contig60465:742..9191691481400.5375824-CDS-H-paniculata_contig60465:742..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60465 743..919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60465.13726.1prot_H-paniculata_contig60465.13726.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60465 743..919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60465.13726.1

>prot_H-paniculata_contig60465.13726.1 ID=prot_H-paniculata_contig60465.13726.1|Name=mRNA_H-paniculata_contig60465.13726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIK
GIHYQEASS
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mRNA from alignment at H-paniculata_contig60465:743..919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60465.13726.1 ID=mRNA_H-paniculata_contig60465.13726.1|Name=mRNA_H-paniculata_contig60465.13726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig60465:743..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCGACAACGGGCTTGGACACAAGTGGAGCGCCCGAAGAATACGCTGGT CGTAAGCACGATGATGATCTACAAAAGGAAAATCGGCGAGGACGGCAAAG TGGAGAAATATAAGTGCCGCCTGGTCGCCCACGGAAACCGTCAGATCAAG GGCATCCACTACCAGGAAGCTTCGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig60465:743..919+

>mRNA_H-paniculata_contig60465.13726.1 ID=mRNA_H-paniculata_contig60465.13726.1|Name=mRNA_H-paniculata_contig60465.13726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig60465:743..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCGACAACGGGCTTGGACACAAGTGGAGCGCCCGAAGAATACGCTGGT
CGTAAGCACGATGATGATCTACAAAAGGAAAATCGGCGAGGACGGCAAAG
TGGAGAAATATAAGTGCCGCCTGGTCGCCCACGGAAACCGTCAGATCAAG
GGCATCCACTACCAGGAAGCTTCGTCCAATCGACAACGGGCTTGGACACA
AGTGGAGCGCCCGAAGAATACGCTGGTCGTAAGCACGATGATGATCTACA
AAAGGAAAATCGGCGAGGACGGCAAAGTGGAGAAATATAAGTGCCGCCTG
GTCGCCCACGGAAACCGTCAGATCAAGGGCATCCACTACCAGGAAGCTTC
GTCC
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