mRNA_H-paniculata_contig60465.13726.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2JB11_ARAVE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2JB11_ARAVE) HSP 1 Score: 55.5 bits (132), Expect = 1.410e-8 Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQE 168
N ++ WT V++P N ++ ++ K + GK+ +YK RLVA G +Q+KGIHY E
Sbjct: 9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDE 64
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR) HSP 1 Score: 54.7 bits (130), Expect = 1.540e-8 Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 10 RAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
+ W V+ P+ +++ +++KRKIG DGKVE YK RLVA G RQ + + Y+E S
Sbjct: 12 QVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFS 67
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2HGG7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HGG7_ARAVE) HSP 1 Score: 58.2 bits (139), Expect = 2.090e-8 Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
N ++ WT+V++P N ++ ++ K + GK+ +YK RLVA G +Q+KGIHY E S
Sbjct: 2 NNRKVWTRVQKPNNNKIIGCRWVFTAKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 60
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2FX92_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FX92_ARAVE) HSP 1 Score: 56.2 bits (134), Expect = 5.360e-8 Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
N ++ WT V++P N ++ ++ K + GK+ +YK RLVA G +Q+KGIHY E S
Sbjct: 9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 67
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2BMW9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BMW9_ARAVE) HSP 1 Score: 56.2 bits (134), Expect = 6.650e-8 Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
N ++ WT V++P N ++ ++ K + GK+ +YK RLVA G +Q+KGIHY E S
Sbjct: 9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 67
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2N4U9_ARAVE (Retrovirus-related Pol polyprotein from transposon RE1 (Fragment) n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2N4U9_ARAVE) HSP 1 Score: 53.9 bits (128), Expect = 1.740e-7 Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
N ++ WT V+ P N ++ ++ K + GK+ +YK RLVA G +Q KGIHY E S
Sbjct: 9 NNRKVWTLVQTPPNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQTKGIHYDEVFS 67
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE) HSP 1 Score: 52.0 bits (123), Expect = 3.330e-7 Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 10 RAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQ 144
+ W VE PK+ VV + ++KRKIGE+GKVE+YK RLVA G Q
Sbjct: 12 QVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD) HSP 1 Score: 54.7 bits (130), Expect = 3.500e-7 Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 16 WTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
W V RPKNT ++ +M +YK K +G++ +YK RLVA+GN Q+ G+ E S
Sbjct: 437 WCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFS 490
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A2I0JAE1_PUNGR (CCHC-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JAE1_PUNGR) HSP 1 Score: 54.3 bits (129), Expect = 4.750e-7 Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
++ + W V+ + + + ++KRKIG DGKVE YK RL A GNRQ +G+ Y+E S
Sbjct: 314 SKNQVWDLVDPHEGIVPIENKWVFKRKIGADGKVETYKARLAATGNRQRQGVDYEETFS 372
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2WH23_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WH23_ARAVE) HSP 1 Score: 53.1 bits (126), Expect = 1.170e-6 Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 177
N ++ W V++P N ++ ++ K + GK+ +YK RLVA G +Q KGIHY E S
Sbjct: 9 NNRKVWPLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQTKGIHYDEVFS 67 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60465.13726.1 >prot_H-paniculata_contig60465.13726.1 ID=prot_H-paniculata_contig60465.13726.1|Name=mRNA_H-paniculata_contig60465.13726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKback to top mRNA from alignment at H-paniculata_contig60465:743..919+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60465.13726.1 ID=mRNA_H-paniculata_contig60465.13726.1|Name=mRNA_H-paniculata_contig60465.13726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig60465:743..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60465:743..919+ >mRNA_H-paniculata_contig60465.13726.1 ID=mRNA_H-paniculata_contig60465.13726.1|Name=mRNA_H-paniculata_contig60465.13726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig60465:743..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |