prot_H-paniculata_contig60465.13726.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig60465.13726.1
Unique Nameprot_H-paniculata_contig60465.13726.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length59
Homology
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2JB11_ARAVE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2JB11_ARAVE)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-8
Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQE 56
            N ++ WT V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E
Sbjct:    9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDE 64          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 54.7 bits (130), Expect = 1.540e-8
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    4 RAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            + W  V+ P+  +++   +++KRKIG DGKVE YK RLVA G RQ + + Y+E  S
Sbjct:   12 QVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A2I0JPZ3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JPZ3_PUNGR)

HSP 1 Score: 58.2 bits (139), Expect = 1.650e-8
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            N  + W  V+ P+  + +    ++KRKIG DGKVE YK RLVA GNRQ + ++Y+E  S
Sbjct:  123 NESQVWDLVDPPEGIIPIRNKWVFKRKIGADGKVETYKARLVAKGNRQRQEVNYKETFS 181          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2HGG7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HGG7_ARAVE)

HSP 1 Score: 58.2 bits (139), Expect = 2.090e-8
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            N ++ WT+V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E  S
Sbjct:    2 NNRKVWTRVQKPNNNKIIGCRWVFTAKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 60          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2FX92_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FX92_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 5.360e-8
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            N ++ WT V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E  S
Sbjct:    9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2BMW9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BMW9_ARAVE)

HSP 1 Score: 56.2 bits (134), Expect = 6.650e-8
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            N ++ WT V++P N  ++    ++  K  + GK+ +YK RLVA G +Q+KGIHY E  S
Sbjct:    9 NNRKVWTLVQKPNNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQMKGIHYDEVFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A4Y2N4U9_ARAVE (Retrovirus-related Pol polyprotein from transposon RE1 (Fragment) n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2N4U9_ARAVE)

HSP 1 Score: 53.9 bits (128), Expect = 1.740e-7
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            N ++ WT V+ P N  ++    ++  K  + GK+ +YK RLVA G +Q KGIHY E  S
Sbjct:    9 NNRKVWTLVQTPPNNKIIGCRWVFTVKNDDQGKIVRYKARLVAQGFKQTKGIHYDEVFS 67          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE)

HSP 1 Score: 52.0 bits (123), Expect = 3.330e-7
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0
Query:    4 RAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQ 48
            + W  VE PK+  VV +  ++KRKIGE+GKVE+YK RLVA G  Q
Sbjct:   12 QVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 54.7 bits (130), Expect = 3.500e-7
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0
Query:    6 WTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            W  V RPKNT ++ +M +YK K   +G++ +YK RLVA+GN Q+ G+   E  S
Sbjct:  437 WCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFS 490          
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Match: A0A2I0JAE1_PUNGR (CCHC-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JAE1_PUNGR)

HSP 1 Score: 54.3 bits (129), Expect = 4.750e-7
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    1 NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASS 59
            ++ + W  V+  +  + +    ++KRKIG DGKVE YK RL A GNRQ +G+ Y+E  S
Sbjct:  314 SKNQVWDLVDPHEGIVPIENKWVFKRKIGADGKVETYKARLAATGNRQRQGVDYEETFS 372          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60465.13726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2JB11_ARAVE1.410e-841.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0HGX5_PUNGR1.540e-844.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0JPZ3_PUNGR1.650e-845.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2HGG7_ARAVE2.090e-840.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2FX92_ARAVE5.360e-840.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2BMW9_ARAVE6.650e-840.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2N4U9_ARAVE1.740e-740.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7TFD5_AMPQE3.330e-755.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00090104FD3.500e-744.44uncharacterized protein LOC104779870 isoform X1 n=... [more]
A0A2I0JAE1_PUNGR4.750e-742.37CCHC-type domain-containing protein n=1 Tax=Punica... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 5..59
e-value: 7.9E-10
score: 38.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60465contigH-paniculata_contig60465:743..919 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60465.13726.1mRNA_H-paniculata_contig60465.13726.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig60465 743..919 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig60465.13726.1 ID=prot_H-paniculata_contig60465.13726.1|Name=mRNA_H-paniculata_contig60465.13726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
NRQRAWTQVERPKNTLVVSTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIK
GIHYQEASS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2