mRNA_H-paniculata_contig6045.13724.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6045.13724.1
Unique NamemRNA_H-paniculata_contig6045.13724.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6045.13724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6045contigH-paniculata_contig6045:8483..9207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size725
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6045.13724.1prot_H-paniculata_contig6045.13724.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6045 8756..9202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.515738-UTR-H-paniculata_contig6045:8482..87551622930673.515738-UTR-H-paniculata_contig6045:8482..8755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6045 8483..8755 +
1691481400.4385211-UTR-H-paniculata_contig6045:8482..87551691481400.4385211-UTR-H-paniculata_contig6045:8482..8755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6045 8483..8755 +
1622930673.555232-UTR-H-paniculata_contig6045:9202..92071622930673.555232-UTR-H-paniculata_contig6045:9202..9207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6045 9203..9207 +
1691481400.4629376-UTR-H-paniculata_contig6045:9202..92071691481400.4629376-UTR-H-paniculata_contig6045:9202..9207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6045 9203..9207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.5341494-CDS-H-paniculata_contig6045:8755..92021622930673.5341494-CDS-H-paniculata_contig6045:8755..9202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6045 8756..9202 +
1691481400.452815-CDS-H-paniculata_contig6045:8755..92021691481400.452815-CDS-H-paniculata_contig6045:8755..9202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6045 8756..9202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6045.13724.1

>prot_H-paniculata_contig6045.13724.1 ID=prot_H-paniculata_contig6045.13724.1|Name=mRNA_H-paniculata_contig6045.13724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MFPLLVMPGQARIVIIGDETLKEMLGIDIMRQLKATVEGTGIGEEKESKK
EDEFGKVEERELLRRRRIELKVESRQEATGRAIGSGDADDSVIYSCQRRL
RPRSRRGGERASHAVPKQLLDLRKTRPHQAKVWQKPSGGAAFRVEVGQ*
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mRNA from alignment at H-paniculata_contig6045:8483..9207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6045.13724.1 ID=mRNA_H-paniculata_contig6045.13724.1|Name=mRNA_H-paniculata_contig6045.13724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=725bp|location=Sequence derived from alignment at H-paniculata_contig6045:8483..9207+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAAGTGTCATCTCCGCGGACGTTTGGAGTTAACTGGAAGTCGAGCAGAG
CCGGCGGACGTAGAGATACTGCTGGATGCAGGCGCTGGAGTGACAGGCAT
CTCCGAGGACGTGTATCTAAGGCTTCAGCAGCTGTGGACGGGGGAGAAAT
TCGACAAACTGTCCACTAGTGGTGTAAAGGCGCAAATCCCGGATGCGCAA
GTTATGTGATCGGAGCGACAGACAATTCCAAAGCATCTCACCCTCAGATT
AAGTTAGGGTGACGTGAAAAATCATGTTTCCACTTCTGGTAATGCCGGGG
CAGGCACGAATAGTCATAATCGGAGACGAGACATTAAAGGAGATGCTGGG
CATAGACATCATGAGGCAGCTCAAGGCAACCGTGGAAGGCACAGGGATTG
GTGAGGAGAAGGAGAGCAAGAAGGAAGACGAGTTTGGAAAAGTGGAGGAG
CGCGAGCTCCTGCGAAGAAGGCGTATCGAATTGAAGGTAGAGAGCAGGCA
GGAGGCCACCGGCAGAGCCATAGGTAGTGGGGATGCTGATGATTCGGTGA
TATATTCATGCCAGAGGAGATTGAGGCCGAGGAGCAGGCGCGGAGGCGAG
CGTGCTTCACACGCGGTTCCGAAGCAACTGCTGGACCTGCGGAAAACTAG
GCCACATCAAGCGAAAGTGTGGCAGAAGCCAAGCGGCGGGGCGGCGTTTC
GGGTCGAGGTGGGTCAGTAGTGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig6045:8483..9207+

>mRNA_H-paniculata_contig6045.13724.1 ID=mRNA_H-paniculata_contig6045.13724.1|Name=mRNA_H-paniculata_contig6045.13724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig6045:8483..9207+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCCACTTCTGGTAATGCCGGGGCAGGCACGAATAGTCATAATCGG
AGACGAGACATTAAAGGAGATGCTGGGCATAGACATCATGAGGCAGCTCA
AGGCAACCGTGGAAGGCACAGGGATTGGTGAGGAGAAGGAGAGCAAGAAG
GAAGACGAGTTTGGAAAAGTGGAGGAGCGCGAGCTCCTGCGAAGAAGGCG
TATCGAATTGAAGGTAGAGAGCAGGCAGGAGGCCACCGGCAGAGCCATAG
GTAGTGGGGATGCTGATGATTCGGTGATATATTCATGCCAGAGGAGATTG
AGGCCGAGGAGCAGGCGCGGAGGCGAGCGTGCTTCACACGCGGTTCCGAA
GCAACTGCTGGACCTGCGGAAAACTAGGCCACATCAAGCGAAAGTGTGGC
AGAAGCCAAGCGGCGGGGCGGCGTTTCGGGTCGAGGTGGGTCAGTAGATG
TTTCCACTTCTGGTAATGCCGGGGCAGGCACGAATAGTCATAATCGGAGA
CGAGACATTAAAGGAGATGCTGGGCATAGACATCATGAGGCAGCTCAAGG
CAACCGTGGAAGGCACAGGGATTGGTGAGGAGAAGGAGAGCAAGAAGGAA
GACGAGTTTGGAAAAGTGGAGGAGCGCGAGCTCCTGCGAAGAAGGCGTAT
CGAATTGAAGGTAGAGAGCAGGCAGGAGGCCACCGGCAGAGCCATAGGTA
GTGGGGATGCTGATGATTCGGTGATATATTCATGCCAGAGGAGATTGAGG
CCGAGGAGCAGGCGCGGAGGCGAGCGTGCTTCACACGCGGTTCCGAAGCA
ACTGCTGGACCTGCGGAAAACTAGGCCACATCAAGCGAAAGTGTGGCAGA
AGCCAAGCGGCGGGGCGGCGTTTCGGGTCGAGGTGGGTCAGTAG
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