mRNA_H-paniculata_contig6044.13722.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6044.13722.1
Unique NamemRNA_H-paniculata_contig6044.13722.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6044.13722.1 vs. uniprot
Match: A0A6H5JVW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.670e-5
Identity = 78/126 (61.90%), Postives = 90/126 (71.43%), Query Frame = 3 
Query: 1008 TSDTGLVXXXXXXXXXXXTGANSPGTLTLKSGDDSTTATLSSSLDLASSGNIAXXXXXXXXXXXXXXXXXXXXXXXXSFISLSGSPLKGWDLGTGSISAGIGTAGIPATATINSIVGVLTRGFSAD 1385
            TSD  LVXXXXXXXXX   GAN PGTLTL+SGD +TTATL+S  DL+SSG I     XXXXXXXXXXXXXXXXXXXX     + S L+GWD+ T +I   +GT     TA INSIVG  TR ++A+
Sbjct:  844 TSDASLVXXXXXXXXXGNAGAN-PGTLTLESGDGTTTATLASEFDLSSSGGI--DLVXXXXXXXXXXXXXXXXXXXXXXXXXAASTLQGWDMATATIDEPVGTQ----TAIINSIVGSYTRKWTAN 962
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6044.13722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVW2_9PHAE2.670e-561.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6044contigH-paniculata_contig6044:5890..7781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1836
Cds size1287
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6044.13722.1prot_H-paniculata_contig6044.13722.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6044 6078..7420 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.4270184-UTR-H-paniculata_contig6044:5889..60771622930673.4270184-UTR-H-paniculata_contig6044:5889..6077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6044 5890..6077 +
1691481400.3888016-UTR-H-paniculata_contig6044:5889..60771691481400.3888016-UTR-H-paniculata_contig6044:5889..6077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6044 5890..6077 +
1622930673.4750197-UTR-H-paniculata_contig6044:7420..77811622930673.4750197-UTR-H-paniculata_contig6044:7420..7781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6044 7421..7781 +
1691481400.4226372-UTR-H-paniculata_contig6044:7420..77811691481400.4226372-UTR-H-paniculata_contig6044:7420..7781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6044 7421..7781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.4444423-CDS-H-paniculata_contig6044:6077..73461622930673.4444423-CDS-H-paniculata_contig6044:6077..7346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6044 6078..7346 +
1691481400.4025936-CDS-H-paniculata_contig6044:6077..73461691481400.4025936-CDS-H-paniculata_contig6044:6077..7346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6044 6078..7346 +
1622930673.462143-CDS-H-paniculata_contig6044:7402..74201622930673.462143-CDS-H-paniculata_contig6044:7402..7420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6044 7403..7420 +
1691481400.4140584-CDS-H-paniculata_contig6044:7402..74201691481400.4140584-CDS-H-paniculata_contig6044:7402..7420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6044 7403..7420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6044.13722.1

>prot_H-paniculata_contig6044.13722.1 ID=prot_H-paniculata_contig6044.13722.1|Name=mRNA_H-paniculata_contig6044.13722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=429bp
MVSFSSGASTLGNSGAVMIGSGTATTGAGGLLSLTVGLGDSGAGGSLELV
AGESTATSAGTGGSVTIHSGSGTATSSGSVTIQSVDAGSGGSGGVSGAVT
FSSGTATSGNSGALLLGSGTSTGGRGGGVSLTVGSGSSGVGGGISIVAGE
SSAASSSGGSIEITGGLASSGAGGAVQVIGGTGASTTGGEITITSGSGSA
TTSGALSIQSAPGGLLGSSGTMDFISGTTSAGNSGAVIIGSGTALGGGGG
ALSLTVGQGDSGVGGAVAITAGSTSDTGLVGGAITIASGSNTGANSPGTL
TLKSGDDSTTATLSSSLDLASSGNIAITTTDSSSITITSADALDLVSASS
SFISLSGSPLKGWDLGTGSISAGIGTAGIPATATINSIVGVLTRGFSADA
LGLTDYVTIYNSFIAANEVVLATYSRAS*
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mRNA from alignment at H-paniculata_contig6044:5890..7781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6044.13722.1 ID=mRNA_H-paniculata_contig6044.13722.1|Name=mRNA_H-paniculata_contig6044.13722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1892bp|location=Sequence derived from alignment at H-paniculata_contig6044:5890..7781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAAACCTAAGCCTCACAGGAGGATCCAGCACTTCCGGTACCGGAGGC
GATCTCACAATTTCCGGGGGAAGTGGAGCTGCAGCCGGGGGAGGCGATGT
CTCCATCACCAGCGGAAAGCCCACAGCGGGCGCCAGCGGAACGATCTCGA
TTTCCTCTGCGACAGCCGGCACGACGGCTGAAAGTGGCATGGTGTCCTTT
AGTTCTGGCGCAAGTACTTTGGGGAATAGCGGTGCAGTCATGATTGGGAG
CGGTACAGCCACAACCGGAGCAGGGGGACTCCTCAGCCTCACTGTGGGAC
TCGGGGACAGTGGTGCGGGTGGTAGCTTAGAGTTGGTGGCTGGAGAGTCC
ACAGCGACGTCGGCCGGAACAGGTGGGTCGGTGACCATCCACAGCGGTTC
GGGGACGGCTACATCCAGTGGATCGGTTACCATTCAATCTGTAGACGCAG
GATCTGGAGGCTCCGGAGGCGTGAGTGGGGCGGTCACCTTCAGCTCGGGC
ACAGCCACATCCGGCAACAGCGGCGCCTTGCTACTCGGAAGTGGGACATC
GACCGGCGGGAGGGGTGGTGGAGTTAGCTTAACCGTTGGTTCTGGAAGTA
GTGGTGTTGGCGGTGGTATTTCAATCGTCGCAGGAGAATCGAGCGCAGCT
TCTAGCAGCGGAGGGTCAATTGAGATTACAGGGGGTTTGGCTTCCTCTGG
TGCTGGTGGGGCCGTGCAAGTGATTGGCGGCACGGGTGCCAGTACTACCG
GTGGGGAAATTACTATCACGTCCGGTTCAGGATCGGCAACAACAAGTGGG
GCCCTCTCTATTCAAAGCGCTCCCGGAGGTTTACTAGGATCTAGCGGCAC
CATGGACTTCATCTCAGGCACAACCAGCGCCGGCAATTCTGGAGCGGTCA
TCATTGGATCTGGTACTGCATTAGGAGGCGGCGGCGGTGCTCTAAGCCTG
ACCGTTGGACAAGGTGACAGCGGAGTTGGTGGAGCGGTGGCTATAACGGC
TGGCTCCACGAGTGACACAGGTCTTGTTGGAGGGGCGATCACAATCGCGT
CAGGGAGTAACACTGGTGCCAACTCTCCCGGAACACTCACACTGAAGAGT
GGCGACGACAGCACCACAGCCACACTGAGCTCTTCGCTGGACCTGGCGAG
TAGTGGCAATATCGCGATCACCACGACGGACTCTTCTTCTATCACAATCA
CATCTGCTGACGCCCTTGATCTTGTCTCTGCCTCTTCGTCGTTCATCTCG
CTGAGCGGATCTCCCTTAAAAGGATGGGATCTGGGAACGGGGTCCATAAG
TGCCGGCATTGGCACCGCGGGTATTCCCGCAACGGCCACGATAAATTCAA
TTGTTGGTGTATTGACCAGGGGATTTAGCGCCGATGCTTTGGGATTAACC
GATTACGTCACAATTTACAACTCATTCATCGCGGCCAACGAGGTCGTTTT
GGCGACGGTTACAGACTCTTGCGACGGTGATGTAACCATGGCTGTAACTT
CTACAGACACTAGTACTCTCGGGCAAGTTGACCTGAAAGTACCCGTGAGT
TGCGATAGTGGTGAATCTTACACTGTCCTTGCGGTGGTATTCAAGGCCGC
ATAGTGATGAACGCGTTGTCATTTGTTACCTTATCCACGAAAGCCGAGGA
GTCGTGCATTCTGGACATTCGTCCGAGTTGTTTGCTTTCTTGAATAAAAG
GTCTTATCAGAGCGATTGTTCATCTAGAGACTGTTTTATTCGCCCGGTGA
CGTTGAGTGAACATGGAAACCTCGTTGAGTTGAAAAGATGATGCATTTCG
AGGCCATACGTTACACAGGTGCATTTTTTGTCCAAGGGAGGGACCATGCA
TCTGTGCCGGGGGCGTCTCTCCAACGACGGATTGCCGCACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6044:5890..7781+

>mRNA_H-paniculata_contig6044.13722.1 ID=mRNA_H-paniculata_contig6044.13722.1|Name=mRNA_H-paniculata_contig6044.13722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2574bp|location=Sequence derived from alignment at H-paniculata_contig6044:5890..7781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCCTTTAGTTCTGGCGCAAGTACTTTGGGGAATAGCGGTGCAGT
CATGATTGGGAGCGGTACAGCCACAACCGGAGCAGGGGGACTCCTCAGCC
TCACTGTGGGACTCGGGGACAGTGGTGCGGGTGGTAGCTTAGAGTTGGTG
GCTGGAGAGTCCACAGCGACGTCGGCCGGAACAGGTGGGTCGGTGACCAT
CCACAGCGGTTCGGGGACGGCTACATCCAGTGGATCGGTTACCATTCAAT
CTGTAGACGCAGGATCTGGAGGCTCCGGAGGCGTGAGTGGGGCGGTCACC
TTCAGCTCGGGCACAGCCACATCCGGCAACAGCGGCGCCTTGCTACTCGG
AAGTGGGACATCGACCGGCGGGAGGGGTGGTGGAGTTAGCTTAACCGTTG
GTTCTGGAAGTAGTGGTGTTGGCGGTGGTATTTCAATCGTCGCAGGAGAA
TCGAGCGCAGCTTCTAGCAGCGGAGGGTCAATTGAGATTACAGGGGGTTT
GGCTTCCTCTGGTGCTGGTGGGGCCGTGCAAGTGATTGGCGGCACGGGTG
CCAGTACTACCGGTGGGGAAATTACTATCACGTCCGGTTCAGGATCGGCA
ACAACAAGTGGGGCCCTCTCTATTCAAAGCGCTCCCGGAGGTTTACTAGG
ATCTAGCGGCACCATGGACTTCATCTCAGGCACAACCAGCGCCGGCAATT
CTGGAGCGGTCATCATTGGATCTGGTACTGCATTAGGAGGCGGCGGCGGT
GCTCTAAGCCTGACCGTTGGACAAGGTGACAGCGGAGTTGGTGGAGCGGT
GGCTATAACGGCTGGCTCCACGAGTGACACAGGTCTTGTTGGAGGGGCGA
TCACAATCGCGTCAGGGAGTAACACTGGTGCCAACTCTCCCGGAACACTC
ACACTGAAGAGTGGCGACGACAGCACCACAGCCACACTGAGCTCTTCGCT
GGACCTGGCGAGTAGTGGCAATATCGCGATCACCACGACGGACTCTTCTT
CTATCACAATCACATCTGCTGACGCCCTTGATCTTGTCTCTGCCTCTTCG
TCGTTCATCTCGCTGAGCGGATCTCCCTTAAAAGGATGGGATCTGGGAAC
GGGGTCCATAAGTGCCGGCATTGGCACCGCGGGTATTCCCGCAACGGCCA
CGATAAATTCAATTGTTGGTGTATTGACCAGGGGATTTAGCGCCGATGCT
TTGGGATTAACCGATTACGTCACAATTTACAACTCATTCATCGCGGCCAA
CGAGGTCGTTTTGGCGACGATGGTGTCCTTTAGTTCTGGCGCAAGTACTT
TGGGGAATAGCGGTGCAGTCATGATTGGGAGCGGTACAGCCACAACCGGA
GCAGGGGGACTCCTCAGCCTCACTGTGGGACTCGGGGACAGTGGTGCGGG
TGGTAGCTTAGAGTTGGTGGCTGGAGAGTCCACAGCGACGTCGGCCGGAA
CAGGTGGGTCGGTGACCATCCACAGCGGTTCGGGGACGGCTACATCCAGT
GGATCGGTTACCATTCAATCTGTAGACGCAGGATCTGGAGGCTCCGGAGG
CGTGAGTGGGGCGGTCACCTTCAGCTCGGGCACAGCCACATCCGGCAACA
GCGGCGCCTTGCTACTCGGAAGTGGGACATCGACCGGCGGGAGGGGTGGT
GGAGTTAGCTTAACCGTTGGTTCTGGAAGTAGTGGTGTTGGCGGTGGTAT
TTCAATCGTCGCAGGAGAATCGAGCGCAGCTTCTAGCAGCGGAGGGTCAA
TTGAGATTACAGGGGGTTTGGCTTCCTCTGGTGCTGGTGGGGCCGTGCAA
GTGATTGGCGGCACGGGTGCCAGTACTACCGGTGGGGAAATTACTATCAC
GTCCGGTTCAGGATCGGCAACAACAAGTGGGGCCCTCTCTATTCAAAGCG
CTCCCGGAGGTTTACTAGGATCTAGCGGCACCATGGACTTCATCTCAGGC
ACAACCAGCGCCGGCAATTCTGGAGCGGTCATCATTGGATCTGGTACTGC
ATTAGGAGGCGGCGGCGGTGCTCTAAGCCTGACCGTTGGACAAGGTGACA
GCGGAGTTGGTGGAGCGGTGGCTATAACGGCTGGCTCCACGAGTGACACA
GGTCTTGTTGGAGGGGCGATCACAATCGCGTCAGGGAGTAACACTGGTGC
CAACTCTCCCGGAACACTCACACTGAAGAGTGGCGACGACAGCACCACAG
CCACACTGAGCTCTTCGCTGGACCTGGCGAGTAGTGGCAATATCGCGATC
ACCACGACGGACTCTTCTTCTATCACAATCACATCTGCTGACGCCCTTGA
TCTTGTCTCTGCCTCTTCGTCGTTCATCTCGCTGAGCGGATCTCCCTTAA
AAGGATGGGATCTGGGAACGGGGTCCATAAGTGCCGGCATTGGCACCGCG
GGTATTCCCGCAACGGCCACGATAAATTCAATTGTTGGTGTATTGACCAG
GGGATTTAGCGCCGATGCTTTGGGATTAACCGATTACGTCACAATTTACA
ACTCATTCATCGCGGCCAACGAGGTCGTTTTGGCGACGTACTCTCGGGCA
AGTTGATACTCTCGGGCAAGTTGA
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