mRNA_H-paniculata_contig6043.13721.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: D8LU67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU67_ECTSI) HSP 1 Score: 316 bits (809), Expect = 1.200e-94 Identity = 183/371 (49.33%), Postives = 227/371 (61.19%), Query Frame = 2
Query: 635 RITGTNSEPSTIGGSICAERAAMCKLREVTDCKRVTKVVVVSDSPRPLAPGVLCREFLSTHLPLCTPIIMSGSGDGAFLADAGAFDYEKHEHEAQPPGDRYDNIINSNIXXXXXXXXXXXXXXXXXXXFQSTCWCVDTSKSGEH----AEKPRTQL------------------------VRSPRIGGC----IDVSTIGELYPWRNLYGLTPRGDQVRLGFIEQQTSQDLSKFEIAETLGLDSAVLPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAKDGIKACCLLLVDQFGNLHAPFAQARAFLCEHGFRNSQVLVHGNDGKLVVVKAKGQL 1651
R TGTN+E STIG SICAERAAMCKLRE ++CKRVTKVVVV+D PLAPGVLCREFLS HL TP+IMSGSG+ G YE+ + P D+ N TC C +G+ A P V+S G +DVST+G+LYPW+N+YG+T RG+Q++LGF+ QQ +++LS +AE +GL+S V V+AYD A RATA D++D +HPIRYAA A+F DG+ E+ HQ+KA EYGA+LDPVTLLAP MMRRAKDGI+ +LLVDQFGNLHAPFAQAR FL EHGF ++V +H G +VV+KAK L
Sbjct: 3 RPTGTNAEASTIGSSICAERAAMCKLREESNCKRVTKVVVVTDHQHPLAPGVLCREFLSAHLCPSTPVIMSGSGEAIV---PGGLLYEEPNLKPSP-----DSAKNGGGATGSGALVAGEAAV-------DTCGCEAAPPAGDGRHAGAATPAAAXXXXXXXXXXXXXXXXXXXXXXXXRVQSGGNEGAAPAPVDVSTVGQLYPWKNMYGVTERGEQLKLGFLAQQKAEELSDPNLAERVGLESGV----VEAYDAAWRATAGDDKDDIHPIRYAAVALFSDGEAEITHQLKAFEYGASLDPVTLLAPAMMRRAKDGIRTSWVLLVDQFGNLHAPFAQARTFLSEHGFGETKVAIHEAGGGVVVIKAKALL 354
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A6H5KDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ5_9PHAE) HSP 1 Score: 305 bits (782), Expect = 8.820e-91 Identity = 180/390 (46.15%), Postives = 226/390 (57.95%), Query Frame = 2
Query: 641 TGTNSEPSTIGGSICAERAAMCKLREVTDCKRVTKVVVVSDSPRPLAP---------------GVLCREFLSTHLPLCTPIIMSGSGD------------------------------GAFLADAGAFDY-----------EKHEHEAQPPGDRYDNIINSNIXXXXXXXXXXXXXXXXXXXFQSTCWCVDTSKSGEHAEKPRTQLVRSPRIGGCIDVSTIGELYPWRNLYGLTPRGDQVRLGFIEQQTSQDLSKFEIAETLGLDSAVLPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAKDGIKACCLLLVDQFGNLHAPFAQARAFLCEHGFRNSQVLVHGNDGKLVVVKAK 1642
TGTN+E STIG SICAERAAMCKLRE ++CKRVTKVVVV+D PLAP GVLCREFLS HL TP++MSGSG+ GA +A A D KH A PP + + V+ + G A+ ++ ++ + +DVST+GELYPWRN+YG+T RG Q++LGF+ QQ +++LS +AE +GL+ V V+AYD A RATA D++D +HPIRYAA A+F DG+ E+ HQ+KA EYGATLDPVTLLAP MMRRAKDGI+ +LLVDQFGNLHAPFAQAR FL EHGF ++V +H G +VV+KAK
Sbjct: 5 TGTNAESSTIGSSICAERAAMCKLREESNCKRVTKVVVVTDYQHPLAPDTLERFRFVLFCVTQGVLCREFLSAHLRPSTPVVMSGSGEAIIPGGLLYEESNLKPWPDSAKTGGGATGSGALVAGEAAVDTCGCETAPPAGDGKHAGAATPPAASPSPYSSCDTRILAAS--------------------VERGEGGGRAQSGGSEGAKAAPLR--MDVSTVGELYPWRNMYGVTERGGQLKLGFLVQQKAEELSDPNLAERVGLERGV----VEAYDAAWRATAGDDKDDIHPIRYAAVALFSDGEAEITHQLKAFEYGATLDPVTLLAPAMMRRAKDGIRTSWVLLVDQFGNLHAPFAQARTFLSEHGFGETKVAIHEAGGGVVVIKAK 368
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A835ZD32_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD32_9STRA) HSP 1 Score: 207 bits (528), Expect = 3.780e-54 Identity = 144/382 (37.70%), Postives = 184/382 (48.17%), Query Frame = 2
Query: 530 VAVAHELRLSLDPPHQSLFRVVCILVYEDSSGTTLRITGTNSEPSTIGGSICAERAAMCKLREVTDCKRVTKVVVVSDSPRPLAPGVLCREFLSTHLPLCTPIIMSGSGDGAFLADAGAFDYEKHEHEAQPPGDRYDNIINSNIXXXXXXXXXXXXXXXXXXXFQSTCWCVDTSKSGEHAEKPRTQLVRSPRIGGCIDVSTIGELYPWRNLYGLTPRGDQVRLGFIEQQTSQDLSKFEIAETLGLDSAV----------------------------------LPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVT-LLAPVMMRRAKDGIKACCLLLVDQFGNLHAPFAQARAFLC 1570
V +AH LR SL+PPHQS FRVVC++ YED G T +TGTN+EP IGGSICAERAA+CKLRE RV V VV+D+ PL P VLCREFL+THL +IMSG+ X S C+D + ++ IG+LYP+ +YG+T R +R GF E D + I +TLGL +AV L + AY+ AQR TA D +D LHP+RYAA V+ DG HQ+KA EYG+TLDPV+ LL ++ R+ DG++A + VDQFGN HAPFA AR ++C
Sbjct: 29 VTMAHRLRRSLEPPHQSRFRVVCVIEYEDDGGATHVVTGTNAEPGYIGGSICAERAALCKLREAPFVARVASVTVVTDADAPLCPSVLCREFLATHLDPDVTVIMSGASXXXXXXXX---------------------------------------------XLTSPSSCLDRGMKTADEDS--------------VETCRIGDLYPFPCIYGVTDREALLRHGF-EFARRADAPETAI-KTLGLSAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLLLSLAYELAQRETARDAKDALHPLRYAAVVVYEDGTSAAAHQLKAAEYGSTLDPVSQLLRGMLDRKLDDGVRATHI--VDQFGNCHAPFAPAR-YIC 346
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A7S4T622_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T622_9STRA) HSP 1 Score: 152 bits (383), Expect = 3.080e-35 Identity = 134/455 (29.45%), Postives = 193/455 (42.42%), Query Frame = 2
Query: 494 ERTRDYVENAELV--AVAHELRLSL-DPPHQSLFRVVCILVYEDSS--------------------------------------GTTLRITGTNSEPSTIGGSICAERAAMCKLREVTDCKRVTKVVVVSDSPRPLAPGVLCREFLSTH--LPLCTPIIMSGSGDGA----FLADAGAFDYEKHEHEAQPP---GDRYDNIINSNIXXXXXXXXXXXXXXXXXXXFQSTCWCVDTSKSGEHAE-KPRTQLVRSPRIGGCIDVSTIGELYPWRNLYGLTPRGDQVRLG-----------------FIEQQTSQDLSKFEIAETLGLDSAVLPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAK----DGIKAC------------CLLLVDQFGNLHAPFAQARAFLCEHGFRNSQVLVH 1606
E+T + ++V +AH RL L + P QS FRVV ++ YE + G + GTN EP I GSICAERAA+ +LR + RVTK+V+V+DSP ++PG+LCREF+ +H + L TPI++ G G A A + E + QPP G + D++ + T +S +HA P R +TI LYP ++Y + V G ++ S D S E + + + A + + A +A+ DNR LHP++Y ++ +F DG I Q KALEYG TLD V LA ++ +R D + C ++ DQ+G HAPFA ARA+L EHG+ N VLVH
Sbjct: 4 EKTSSSSKEEDIVDTLLAHRYRLILANAPRQSGFRVVALVFYETNGKERGGGEPSSSLSPIVSIQTKHLAKQWAHHHVGGIHEYGNRKFVVGTNDEPHAISGSICAERAALVQLRFLPQVSRVTKIVIVTDSPSEISPGLLCREFMVSHPKISLDTPIVLGGGICGKCGMNICAPQPATSVQDEEGKRQPPQMDGKKTDDLAEQLLLSCCSHATSLSDLANGV-----------TIQSEDHATFAPMHDFTRVR--------TTIRMLYPHPSVYARFTVTEAVHFGKEYASKSTSLSLKPQSSYVFDDQSIDSSNEEEKKKVEVTIADPKIALQLLNLAIQASEFDNRTDLHPLQYGSSVLFSDGSIATSFQKKALEYGCTLDAVGQLAYIIEKRCNIMTDDNERECKDKQKHKMIRPVLIVQADQYGIAHAPFAPARAYLSEHGYTNCYVLVH 439
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A0L0DEZ7_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DEZ7_THETB) HSP 1 Score: 119 bits (298), Expect = 5.890e-25 Identity = 106/377 (28.12%), Postives = 165/377 (43.77%), Query Frame = 2
Query: 515 ENAELVAVAHELRLSLDPPHQSLFRVVCILVYEDSSGTTLRITGTNSEPSTIGGSICAERAAMCKLREVTDCKRVTKVVVVSDSPRPLAPGVLCREFLSTHLPLCTPIIMSGSGDGAFLADAGAFDYEKHEHEAQPPGDRYDNIINSNIXXXXXXXXXXXXXXXXXXXFQSTCWCVDTSKSGEHAEKPRTQLVRSPRIGGCIDVSTIGELYPWRNLYGLTPRGDQVRLGFIEQQTSQDLSKFEIAETLGLDSAVLPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAKDGIKACCLLLVDQFGNLHAPFAQARAFLCEHGFRNSQVLVHGN--DGKLVVVKA 1639
E+ + + + +R + PP QS FRV + + D+ G + GTN+E I GSICAER+ + ++R++ + + D + PG+LCRE+++ L +++ GA + P G I + + F C+ + AE + +P G + V + + +G + RLG +A G+ ++ + ++ A TA DNRD LHPIRYAA A+F DG I + KALEYGAT++PV +A + G K L ++DQ+G LH PFA +RAFL E + V+VH + DG LVV A
Sbjct: 18 EDHQRIRRLYTVRDAATPPVQSNFRVAAVFAFTDTDGQPQLLDGTNNETCYIHGSICAERSTLPRIRQM-GYNSIDAGYITCDGKGYITPGMLCREYMTEVAGLDLRLVLVS---GATVPS--------------PEGPVPCEINITTVGELYP--------------FPPVYRCISRYEVLNAAEALSAAV--APWWAGSLSVDSDDSXXXXXS----DAQGIEARLG-------------SVAAASGVATSDVYRMLKAI---HAETARDNRDILHPIRYAAGALFDDGSIVTGCETKALEYGATINPVIKIAKALEDAHDAGRKVLLLAVMDQYGVLHGPFADSRAFLHEGPWGAVPVVVHNSEGDGALVVTAA 340
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A7S3ADN8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ADN8_9EUKA) HSP 1 Score: 108 bits (269), Expect = 6.410e-23 Identity = 73/201 (36.32%), Postives = 106/201 (52.74%), Query Frame = 2
Query: 1025 STCWCV-DTSKSGEHAEKPRTQLVRSPRIGGCIDVSTIGELYPWRNLYGLTPRGDQVRLGFIEQQTSQDLSKFEIAETLGLDSAVLPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAKDGIKACCLLLVDQFGNLHAPFAQARAFLCEHGFRNSQVLVHGNDGKL 1624
S+ W DT E PR++ VR T+GEL+P+ + Y R +Q+ G + L + +++ LG DS+ A +A A ADD D +HP+R+ AA VF G++ Q+KALEYG ++DPV LAP++ + + C +VDQFG HAPFA RA+L EHG+ ++LVH G L
Sbjct: 12 SSVWTTADTPVHMEGDAGPRSRTVR-----------TLGELWPYASPYTRLSRAEQLACG----ERLGPLVRPQMSSLLGDDSSCWRAAFEA------AAADDRND-VHPVRFGAAVVFEGGEVAWAWQVKALEYGCSMDPVCQLAPLIAKATRKPTVVC---MVDQFGVAHAPFATGRAYLIEHGWGTVRLLVHTAAGLL 187
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: F0YJE1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJE1_AURAN) HSP 1 Score: 104 bits (259), Expect = 1.860e-20 Identity = 58/110 (52.73%), Postives = 66/110 (60.00%), Query Frame = 2
Query: 1295 AYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAKDGIKACCLLLVDQFGNLHAPFAQARAFLCEHGFRNSQVLVHGNDGKL 1624
AYD A A D RD LHP+RY AA VF DG + Q KALEYG TLDPV LA + R D A L LVDQ G HAPFA RAFLCEHG + +V+ H + G +
Sbjct: 193 AYDAALGAAKGDGRDDLHPVRYGAAVVFCDGSVATARQFKALEYGCTLDPVGQLATAVADR--DAAPAA-LALVDQLGVAHAPFAAGRAFLCEHGHGDVEVVFHDDRGAI 299
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A7S1I1R9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I1R9_9EUGL) HSP 1 Score: 101 bits (251), Expect = 6.790e-20 Identity = 76/192 (39.58%), Postives = 102/192 (53.12%), Query Frame = 2
Query: 1106 IGGCID--------------VSTIGELYPWRNLYGLTPRGDQVRLGFIEQQTSQDLSKFEIAETLGLDSAVLPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAK----DGIKACCLLL-VDQFGNLHAPFAQARAFLCEHGFRNSQVLVHGNDGKL 1624
+ GC+D +T+ EL+P +LY PR D+V + F E+ + + + +G D Y A +AT+ DN+D LHPIRYAAA +F D EV Q KA+EYG T+D VT L ++ AK D +A +L+ VDQFG LHAPFAQ RA L E+GF + VH DG L
Sbjct: 71 MSGCVDDCTLIHMMGSKTRRTATLEELHPCASLYAKVPR-DKV-VSFAEELSGR------CTKAVGKDRWNK-----VYLAALQATSHDNKDELHPIRYAAAVLFDDDTYEVAWQDKAVEYGNTIDAVTKLFHLIQSVAKWVPADSARAPQVLMHVDQFGILHAPFAQPRALLSENGFGSIVCPVHRMDGTL 249
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A3F2RYN7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYN7_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.310e-17 Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 2
Query: 1316 ATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRA-----------KDGIKACCLLLVDQFGNLHAPFAQARAFLCEHGFRNSQVLVHGNDGKL 1624
ATA+D RD L P+RYAA F DG+I V Q K LEYG++LD V+ L P + + ++ ++ ++ VDQFG LHAPFA+ARA+ E GF + VL+H +GKL
Sbjct: 102 ATANDARDDLFPLRYAAGTQFTDGEIRVTWQHKTLEYGSSLDAVSKLIPFVEAKQQTTEDTPSPEERNIVRPTFIIQVDQFGILHAPFARARAYFFEFGFLDVPVLIHDAEGKL 215
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Match: A0A4D9DAD1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAD1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 6.530e-17 Identity = 69/170 (40.59%), Postives = 90/170 (52.94%), Query Frame = 2
Query: 1130 TIGELYPWRNLYGLTPRGDQVRLGFIEQQTSQDLSKFEIAETLGLDSAVLPAVVDAYDQAQRATADDNRDGLHPIRYAAAAVFPDGQIEVMHQIKALEYGATLDPVTLLAPVMMRRAKDGIKACCLLLV-DQFGNLHAPFAQARAFLCEHGFRNSQVLVHG-NDGKLVVV 1633
T+G LYP+ +LY T R V G E ++ + EI + G + V+D+ TA D++D LHPIRYAA F DG V Q K LEYG T+D V LA M R G+ LLL DQFG LHAP AR FL E+ + + +LVH + GKL+ +
Sbjct: 145 TLGALYPYASLYRHTDRNTLVITG--EAFVAKGI---EIPQNGGPQEKLYREVLDS-------TARDDKDELHPIRYAAGVRFADGIQVVAWQKKGLEYGTTIDAVVQLAHAMEWRRGQGLPGPILLLQSDQFGILHAPSGHARGFLMEYDYGDLPLLVHETSSGKLLTL 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6043.13721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6043.13721.1 >prot_H-paniculata_contig6043.13721.1 ID=prot_H-paniculata_contig6043.13721.1|Name=mRNA_H-paniculata_contig6043.13721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=537bp MFSTRFSGSIFSRSVAKAICISRHSRHPAGWTTTTRWSHHRSHHSYHGTEback to top mRNA from alignment at H-paniculata_contig6043:322..10665+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6043.13721.1 ID=mRNA_H-paniculata_contig6043.13721.1|Name=mRNA_H-paniculata_contig6043.13721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10344bp|location=Sequence derived from alignment at H-paniculata_contig6043:322..10665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6043:322..10665+ >mRNA_H-paniculata_contig6043.13721.1 ID=mRNA_H-paniculata_contig6043.13721.1|Name=mRNA_H-paniculata_contig6043.13721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3222bp|location=Sequence derived from alignment at H-paniculata_contig6043:322..10665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |