mRNA_H-paniculata_contig6040.13718.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6040.13718.1
Unique NamemRNA_H-paniculata_contig6040.13718.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6040.13718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6040contigH-paniculata_contig6040:9773..11209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930672.4908009-CDS-H-paniculata_contig6040:9772..99221622930672.4908009-CDS-H-paniculata_contig6040:9772..9922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6040 9773..9922 -
1691481400.1140654-CDS-H-paniculata_contig6040:9772..99221691481400.1140654-CDS-H-paniculata_contig6040:9772..9922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6040 9773..9922 -
1622930672.510351-CDS-H-paniculata_contig6040:11143..112091622930672.510351-CDS-H-paniculata_contig6040:11143..11209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6040 11144..11209 -
1691481400.1313772-CDS-H-paniculata_contig6040:11143..112091691481400.1313772-CDS-H-paniculata_contig6040:11143..11209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6040 11144..11209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6040.13718.1prot_H-paniculata_contig6040.13718.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6040 9773..11209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6040.13718.1

>prot_H-paniculata_contig6040.13718.1 ID=prot_H-paniculata_contig6040.13718.1|Name=mRNA_H-paniculata_contig6040.13718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MGITGWDVVKETAEEAELEVVMYPAISVRTSGSPNKYICDASYTWLISLG
QKLGFGKCKLCLQAPVVSGIKD
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mRNA from alignment at H-paniculata_contig6040:9773..11209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6040.13718.1 ID=mRNA_H-paniculata_contig6040.13718.1|Name=mRNA_H-paniculata_contig6040.13718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1437bp|location=Sequence derived from alignment at H-paniculata_contig6040:9773..11209- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCATCACGGGGTGGGATGTGGTGAAGGAGACCGCCGAAGAGGCGGA
GTTGGAAGTTGTCATGGTGAGGATAAAACATTAAATGAAATACAGATTGT
GCAGAGTATGATCAGGAGGTTGACACGAATTGTTACGTGACTACAGCACA
GTAGTAGCGTTAGATCGCACAAGATGTGATGATCTGGTGGTGGTGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGTCGTTACTGATGTTACTGTTTT
TTTGTTTTTTTTCACGATCGTGGAATATGATTGGATGTATCAATTCACGA
TACCTATTTTGTTAATATCATAGTCATATTGTGAAAGGAGGCTTGACGTG
GCAGGAGGAAACCTGGAGGTGGCCACGGTGTTGAGACGATAGAACGAAGT
TTAAAGTGTTGATTTTTTTTGCCCCATGAAAGATGGAACGCGAAAGAGAA
CGGTTTCACGGGGTGGAGTGGACAACTGGCGGGGAGGGATTTTTTGCCTG
AAGTTATGGTGCAATATGGAAGCAGGGTACAGTATCTTTGCGGTAAGTTA
AGATGTGCTAACTAGGAGCACATGAACGAAGACGACCGTTCTCAAGTCTA
GCTGTTCGGCCATGTACGCTATATATATTGTCGATAGTCAGGGGGTTGAC
GGTCAAATTAGTGGAGTTTTGGTTGCTTGCACGATACCATATTTAACTAT
GCCCACAATCGGAAGCCAGGTTTTACTGTTGTACAGAAATGTACGATGTA
TATGCATTTGCGTGTACATCGTACATTTGAATTTTTCATTATTTAATGGC
TCAACACGATCGAACGCCGATACCGTGAAACCCTTCGATATCGCGTCCCC
TGATTACTATTCGCCAGATCCAATTTTCTCGAGAAGCAAGAGCGAGCTTC
CACTGCCGAAACAGCAAGTCTATCGGAAAGTCTCAACGAGATATTTCCAA
TCATACCGCTATTGGTGTCATGATCACCGTCGTTGTCGAGAAAATCGAGC
TTGATTACTATTAGGGGGTGTGCGATTTCAAATGGTGTTAGGGTTCCGGT
TAAGGCACACATACAAATGTTCCGTCACGGTGGCCCAGTCAAGTTGGCGT
GAGAGAAAGTCTTGTCTTTCGACGGTCTTTAGCCCATCCGCGACGTCATC
CGGTGGATGCTCATTTACCCCGCAACCCATTATTGCCCCGCCGCCCCCAT
CTCCGCCGATACCTCCCGTTGACCCGCACCCCCCATCGTCCCGCTAATCC
CGTAACCCCGCCACCGCTCTCTCCCGACTGGTTCTAGTACCCCGCAATCT
CAGTCCGTACATCTGGCTCCCCGAATAAATATATATGCGACGCATCATAC
ACGTGGCTGATCTCTCTTGGGCAGAAACTCGGGTTTGGGAAGTGCAAGCT
GTGCCTTCAGGCTCCGGTAGTGTCGGGGATCAAGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig6040:9773..11209-

>mRNA_H-paniculata_contig6040.13718.1 ID=mRNA_H-paniculata_contig6040.13718.1|Name=mRNA_H-paniculata_contig6040.13718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig6040:9773..11209- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCATCACGGGGTGGGATGTGGTGAAGGAGACCGCCGAAGAGGCGGA
GTTGGAAGTTGTCATGATGGGCATCACGGGGTGGGATGTGGTGAAGGAGA
CCGCCGAAGAGGCGGAGTTGGAAGTTGTCATGTACCCCGCAATCTCAGTC
CGTACATCTGGCTCCCCGAATAAATATATATGCGACGCATCATACACGTG
GCTGATCTCTCTTGGGCAGAAACTCGGGTTTGGGAAGTGCAAGCTGTGCC
TTCAGGCTCCGGTAGTGTCGGGGATCAAGGACTACCCCGCAATCTCAGTC
CGTACATCTGGCTCCCCGAATAAATATATATGCGACGCATCATACACGTG
GCTGATCTCTCTTGGGCAGAAACTCGGGTTTGGGAAGTGCAAGCTGTGCC
TTCAGGCTCCGGTAGTGTCGGGGATCAAGGAC
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