mRNA_H-paniculata_contig1216.1372.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1216.1372.1
Unique NamemRNA_H-paniculata_contig1216.1372.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 6.160e-69
Identity = 147/425 (34.59%), Postives = 226/425 (53.18%), Query Frame = 1
Query:  262 PTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWL---------R*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476
            PT A  S+R+L+A A  ++  LR+FD ++A +++++DE+V++ +PE      G + KLNK++YGL QA R W+      +  + F Q  AD C+FR + +G V + + VHV DI +  +     + F  +L     +K+LGD  +Y GC   R+  A  LK+ QQ Y + +   FGV+     P     P  LK  E    ++ EE+ ++ +RE +G+LMW AT  RP+IA  VRAVAR+  +P   H R  L             I + R + A   +E + D D  +    R  V GG+++   G ISW SR Q+   L  +EAEYV L           Q+  FM P   +  + VFE+N+GAI+LA N  ++  +K+I V+HH + + +   +  + +V +  QHAD LTK L  G F  H
Sbjct:   14 PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQ-FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPL----PVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 9.670e-69
Identity = 162/458 (35.37%), Postives = 244/458 (53.28%), Query Frame = 1
Query:  163 KVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWLR*CSICY-----TRWNGASHMVEA----YTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ-----------IQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476
            +VS  GK+ K K +LVA+GF Q  GV Y E   PT    SIR+L A A   D E  +FD E+A +++ +D EV++++P       G V +L+K++YGL QA R ++ +   D+  I FEQS +DPC+   ++  EV  ++A+HV DIL     R   E     L      K+LG+  F++GC   R+R+A  +++ Q+ Y++S+ ERF V +T      S  PA L  D  ++  E E      +R+ VG+LMW A   RP+I+  VRAVAR S  P  +H +   +  +        T       MV+     Y D D  +    R    G ++++A  +++W SR Q+   L  +EAEYV +            + EF+ PS  IG + V E+NEGAI LA N  +S  +K+I V+HH+  +  + G   + +V +E QHAD+LTK L  G F  H
Sbjct:  203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLA-EMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRT------SSIPASLTNDY-RSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKALPRGCFEVH 652          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 1.260e-68
Identity = 155/465 (33.33%), Postives = 246/465 (52.90%), Query Frame = 1
Query:  133 VVGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWLR*CS---------ICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ-----------IQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKF 1467
            V+    ++K K  + GK+ K K +LVA+GF Q  GV Y E   PT    SIR++ A A   + EL + D E+A  ++ +D EV +++P       G + +LNK++YGL QA R +  +   D+  I FEQS +DPC+ R ++  EV  ++A+HV DIL +   +   E     L      K+LG+  F++GC  +R+R+A  +++ Q+ Y++S+ ERF + +T+  PA   SPA    ++ ++  E EE     +RE VG LMW A   RP  +  VR VAR S  P  +  +   +  S         + Y +          Y D D  +    R  V G ++++A  ++SW S  Q+  +L  SEAEY+ +            + + + PS     ++VFE+NEGAI LA N  +S R+K+I V+HH + +  + G   V +V +++QHAD+LTK L    F
Sbjct:  257 VIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA---SPA----NDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.820e-68
Identity = 163/471 (34.61%), Postives = 246/471 (52.23%), Query Frame = 1
Query:  136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKHIKAL 1488
            V +   +  K +K GK++ +K +LVA+GF QI  V Y     P P++ SI+++ A A  K   L ++D ++A   A +DEEV++++P         + K  +AIYGL Q+GR W     D +    FEQ +ADPC+FRK+VD  V M++ ++V DIL    +    E  A+ L ++F  K+LG+ +++ GC + R+ +A  L++ Q  Y+ SM ERF VK T+R PA   +P    G  PK   E EE   +  REA+G++MW +T  RP+++  VRAVAR +  P   H           +  R   I Y R +G    +  Y D       D RS V G    +   V+S  S+ Q   +L  +EAEY+              +  F+ P  S  ++ V E+N+GAI L  N  +S RTK+I V++H +     +G   V +V T +QHADLLTK L       H + L
Sbjct:  782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1241          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 2.750e-68
Identity = 163/471 (34.61%), Postives = 246/471 (52.23%), Query Frame = 1
Query:  136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKHIKAL 1488
            V +   +  K +K GK++ +K +LVA+GF QI  V Y     P P++ SI+++ A A  K   L ++D ++A   A +DEEV++++P         + K  +AIYGL Q+GR W     D +    FEQ +ADPC+FRK+VD  V M++ ++V DIL    +    E  A+ L ++F  K+LG+ +++ GC + R+ +A  L++ Q  Y+ SM ERF VK T+R PA   +P    G  PK   E EE   +  REA+G++MW +T  RP+++  VRAVAR +  P   H           +  R   I Y R +G    +  Y D       D RS V G    +   V+S  S+ Q   +L  +EAEY+              +  F+ P  S  ++ V E+N+GAI L  N  +S RTK+I V++H +     +G   V +V T +QHADLLTK L       H + L
Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1620          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 2.840e-68
Identity = 163/471 (34.61%), Postives = 246/471 (52.23%), Query Frame = 1
Query:  136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKHIKAL 1488
            V +   +  K +K GK++ +K +LVA+GF QI  V Y     P P++ SI+++ A A  K   L ++D ++A   A +DEEV++++P         + K  +AIYGL Q+GR W     D +    FEQ +ADPC+FRK+VD  V M++ ++V DIL    +    E  A+ L ++F  K+LG+ +++ GC + R+ +A  L++ Q  Y+ SM ERF VK T+R PA   +P    G  PK   E EE   +  REA+G++MW +T  RP+++  VRAVAR +  P   H           +  R   I Y R +G    +  Y D       D RS V G    +   V+S  S+ Q   +L  +EAEY+              +  F+ P  S  ++ V E+N+GAI L  N  +S RTK+I V++H +     +G   V +V T +QHADLLTK L       H + L
Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1783          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 6.960e-68
Identity = 161/459 (35.08%), Postives = 243/459 (52.94%), Query Frame = 1
Query:  136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPL 1452
            V +   +  K +K GK++ +K +LVA+GF QI  V Y     P P++ SI+++ A A  K   L ++D ++A   A +DEEV++++P         + K  +AIYGL Q+GR W     D +    FEQ +ADPC+FRK+VD  V M++ ++V DIL    +    E  A+ L ++F  K+LG+ +++ GC + R+ +A  L++ Q  Y+ SM ERF VK T+R PA   +P    G  PK   E EE   +  REA+G++MW +T  RP+++  VRAVAR +  P   H           +  R   I Y R +G    +  Y D       D RS V G    +   V+S  S+ Q   +L  +EAEY+              +  F+ P  S  ++ V E+N+GAI L  N  +S RTK+I V++H +     +G   V +V T +QHADLLTK L
Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: UPI0019549DCA (uncharacterized protein LOC120413002 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI0019549DCA)

HSP 1 Score: 246 bits (629), Expect = 8.260e-68
Identity = 173/492 (35.16%), Postives = 263/492 (53.46%), Query Frame = 1
Query:   43 EHWKAVEENEMRGMVDNEVWGQRARAKDKLVVGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFP--GAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQ-NRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVK--KTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH------RRRWLR*CS---ICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ--IQEFMEPSMSIG------AVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPL 1452
            EHWK   ++E   ++ N  W      + +  +    +YK K+   G +++YK +LV +G+ Q +GV Y E   P     S+R L A AA  D ++   DA  A L+  + EE+Y+E P  F        V +L KA+YGL Q+ R WN K    +   +   +  DPC++ KV  G+  + VAV+V D+L     +R  TE    +L R FK+KD+G A++ +G  V+R++   E+ LDQ+ YV+++  RF +   K   TP M+ S  L +   P T +EKE MK+  Y+EAVG LM+ A + RP+I   V  ++RF+ NPG  H        R+LR  S   + YT+  G +  +E ++D D  A L+ R  + G V       +SW  + Q+  AL   EAEY+ L   +QE +      G      A+ +  +N+ AI +A N     RTK+I ++HH + DAL+ G+  V YVR+E+Q AD LTKPL
Sbjct:  889 EHWKQAMKDEYEALISNGTWELCDLPEGRSAIKCKWVYKTKLDVNGDIDRYKARLVIKGYSQRKGVDYEETYAPVVRYSSLRYLFALAARLDMKVDQMDAITAFLQGELSEEIYMEQPPCFVDGKKRSKVCRLKKALYGLKQSSRVWNKKLDAALRKFDLVCTDYDPCVYTKV-RGDKMLFVAVYVDDVLIFSNCDRWKTE-IKAQLSREFKMKDIGPAKYVLGIRVSRSKD--EIALDQEKYVEAILSRFQMTDCKPVSTP-MNVSEKLTRDACPSTDQEKERMKSVPYQEAVGCLMYLAQSTRPDICYAVNILSRFNSNPGEKHWCGVKHLFRYLRGTSKFRLTYTK--GGASKIEGFSDADWAADLEDRKSITGYVFTAQGAAVSWSCKRQQTVALSTCEAEYMALSAAVQEALWWRRLRGRIESEEAITIHCDNQSAIAVARNGGYHPRTKHIDIRHHFIRDALEKGEVVVDYVRSEEQTADGLTKPL 1373          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 3.740e-67
Identity = 147/425 (34.59%), Postives = 226/425 (53.18%), Query Frame = 1
Query:  262 PTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWL---------R*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476
            PT A  S+R+L+A A  ++  LR+FD ++A +++++DE+V++ +PE      G + KLNK++YGL QA R W+      +  + F Q  AD C+FR + +G V + + VHV DI +  +     + F  +L     +K+LGD  +Y GC   R+  A  LK+ QQ Y + +   FGV+     P     P  LK  E    ++ EE+ ++ +RE +G+LMW AT  RP+IA  VRAVAR+  +P   H R  L             I + R + A   +E + D D  +    R  V GG+++   G ISW SR Q+   L  +EAEYV L           Q+  FM P   +  + VFE+N+GAI+LA N  ++  +K+I V+HH + + +   +  + +V +  QHAD LTK L  G F  H
Sbjct:  188 PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQ-FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPL----PVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 604          
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 6.860e-67
Identity = 156/468 (33.33%), Postives = 251/468 (53.63%), Query Frame = 1
Query:  133 VVGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWLR*CS---------ICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ-----------IQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476
            V+    ++K K  + GK+ K K +LVA+GF Q  GV Y E   PT    S R++ A A   + EL ++D E+A +++ +D EV++++P       G V +LNK++YGL QA R +  +   ++  I FEQS +DPC+ R ++  EV  +VA+HV DIL +   ++  E     L      K+LG+  F++GC   R+R+A  +++ Q+ Y++S+ ERF V +T+  PA   SP     ++ ++  E E      +RE VG+LMW A   RP+I+  VRAVAR S  P  +H +   +  +         + +   N        Y D D  +  + R  V G ++++A   + W S+ Q+  +   SEAEY+ +            + +F+ PS     ++V E+NEGAI LA N  +S R+K+I V+HH + +  + G   V +V +E+QHAD+LTK L    F  H
Sbjct:  492 VIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA---SPT----NDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 951          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE6.160e-6934.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KN43_9PHAE9.670e-6935.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE1.260e-6833.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.820e-6834.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.750e-6834.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.840e-6834.61Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE6.960e-6835.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0019549DCA8.260e-6835.16uncharacterized protein LOC120413002 n=1 Tax=Culex... [more]
A0A6H5KQB8_9PHAE3.740e-6734.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE6.860e-6733.33Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1216contigH-paniculata_contig1216:18287..19807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score113.2
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog65672.G4TWW2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size1488
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1216.1372.1prot_H-paniculata_contig1216.1372.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1216 18785..19312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.3152041-UTR-H-paniculata_contig1216:18286..187841622928936.3152041-UTR-H-paniculata_contig1216:18286..18784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1216 18287..18784 +
1691480673.4097831-UTR-H-paniculata_contig1216:18286..187841691480673.4097831-UTR-H-paniculata_contig1216:18286..18784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1216 18287..18784 +
1622928936.3487587-UTR-H-paniculata_contig1216:19312..195121622928936.3487587-UTR-H-paniculata_contig1216:19312..19512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1216 19313..19512 +
1691480673.4258554-UTR-H-paniculata_contig1216:19312..195121691480673.4258554-UTR-H-paniculata_contig1216:19312..19512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1216 19313..19512 +
1622928936.363117-UTR-H-paniculata_contig1216:19545..198071622928936.363117-UTR-H-paniculata_contig1216:19545..19807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1216 19546..19807 +
1691480673.4357517-UTR-H-paniculata_contig1216:19545..198071691480673.4357517-UTR-H-paniculata_contig1216:19545..19807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1216 19546..19807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928936.330423-CDS-H-paniculata_contig1216:18784..193121622928936.330423-CDS-H-paniculata_contig1216:18784..19312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1216 18785..19312 +
1691480673.4189975-CDS-H-paniculata_contig1216:18784..193121691480673.4189975-CDS-H-paniculata_contig1216:18784..19312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1216 18785..19312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1216.1372.1

>prot_H-paniculata_contig1216.1372.1 ID=prot_H-paniculata_contig1216.1372.1|Name=mRNA_H-paniculata_contig1216.1372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFAT
ELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKK
TNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPN
IACVVRAVARFSDNPGPAHRRRWLR*
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mRNA from alignment at H-paniculata_contig1216:18287..19807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1216.1372.1 ID=mRNA_H-paniculata_contig1216.1372.1|Name=mRNA_H-paniculata_contig1216.1372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1521bp|location=Sequence derived from alignment at H-paniculata_contig1216:18287..19807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCGAAAACCCGGCGGGAGGCGAAGGAGTCGCAGGAGTGGGAGCATTG GAAAGCGGTGGAAGAGAACGAGATGCGCGGAATGGTAGACAACGAAGTGT GGGGGCAGAGAGCCCGAGCAAAGGACAAGCTTGTGGTGGGAACGACGATG CTTTACAAACGCAAGGTCAGTAAGGTCGGCAAGGTGGAGAAGTACAAATG TAAACTTGTTGCCCAGGGCTTTCCGCAGATCGAAGGGGTACACTACACCG AGAAGTAGTTACCTACACCGGCGACCGTGTCCATCCGGATGCTCTCGGCG ACCGCAGCGGCGAAGGACGGAGAGCTGCGATATTTCGACGCAGAAGAGGC ATTGCTGAAGGCGAACATTGACGAGGAGGTGTATATCGAGGTCCCCGAAA GGTTCTAACACTTCCCGGGAGCAGTGGGTAAGCTGAACAAGGCAATCTAT GGGCTCGTTCAGGCAGGGCGATGTTGGAACATCAAGTTCTGCGACGACAT GACGGCAATCGAGTTCGAGCAGTCAAGGGCAGACCCGTGCATGTTCAGGA AGGTCGTCGACGGAGAGGTGGAAATGGTGGTCGCCGTGCACGTGGGCGAC ATTCTTGCCCACCAACAGAACCGCGCGACAACGGAGTGGTTCGCAACCGA GCTAGAGCGAAGGTTCAAGCTGAAAGACTTAGGTGACGCCGAGTTCTACA TGGGTTGTCACGTTACCCGAAACAGGAAGGCGCACGAGCTGAAACTCGAT CAACAGATGTACGTTCAGTCGATGGCGGAAAGATTCGGTGTCAAGAAGAC GAACAGGACACCAGCCATGTCGGAATCACCAGCACTTTTAAAAGGAGACG AACCGAAGACCCCGGAGGAGAAGGAAGAGATGAAAACATTCTCATATCGA GAGGCAGTGGGGGCGCTAATGTGGGCGGCAACGACGATGCGACCGAATAT AGCGTGCGTAGTACGTGCCGTTGCAAGGTTCAGCGATAACCCCGGCCCAG CACACAGAAGACGGTGGTTAAGATAGTGCAGCATTTGTTACACACGATGG AATGGGGCATCACATATGGTGGAAGCATATACAGACTTGGATCTCGGAGC CTGCTTGGATACTAGAAGCTTGGTATATGGTGGAGTCATGGTGTTGGCGA AGGGGGTGATAAGTTGGCACTCTAGGATGCAGGAAAAAACGGCATTGGGT ATTTCGGAAGCAGAGTACGTCGAACTGTCGGAATAGGTAGAGGATGTGAT GTTTTAAAGGCAGATACAAGAGTTTATGGAACCAAGTATGAGTATCGGAG CGGTGAACGTGTTCGAGAACAACGAAGGGGCTATCAAGCTAGCGAACAAC AAGCACGCTAGCCATAGGACAAAGAACATATGTGTTAAACACCATATGGT GCTGGACGCATTGGATGCCGGAAAGTTTAGGGTACTTTACGTGCGGACAG AAGACCAACACGCGGATCTACTCACAAAGCCACTGGATATGGGTAAGTTC TGCAAGCATATCAAGGCATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1216:18287..19807+

>mRNA_H-paniculata_contig1216.1372.1 ID=mRNA_H-paniculata_contig1216.1372.1|Name=mRNA_H-paniculata_contig1216.1372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig1216:18287..19807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGCAATCGAGTTCGAGCAGTCAAGGGCAGACCCGTGCATGTTCAG
GAAGGTCGTCGACGGAGAGGTGGAAATGGTGGTCGCCGTGCACGTGGGCG
ACATTCTTGCCCACCAACAGAACCGCGCGACAACGGAGTGGTTCGCAACC
GAGCTAGAGCGAAGGTTCAAGCTGAAAGACTTAGGTGACGCCGAGTTCTA
CATGGGTTGTCACGTTACCCGAAACAGGAAGGCGCACGAGCTGAAACTCG
ATCAACAGATGTACGTTCAGTCGATGGCGGAAAGATTCGGTGTCAAGAAG
ACGAACAGGACACCAGCCATGTCGGAATCACCAGCACTTTTAAAAGGAGA
CGAACCGAAGACCCCGGAGGAGAAGGAAGAGATGAAAACATTCTCATATC
GAGAGGCAGTGGGGGCGCTAATGTGGGCGGCAACGACGATGCGACCGAAT
ATAGCGTGCGTAGTACGTGCCGTTGCAAGGTTCAGCGATAACCCCGGCCC
AGCACACAGAAGACGGTGGTTAAGATAGATGACGGCAATCGAGTTCGAGC
AGTCAAGGGCAGACCCGTGCATGTTCAGGAAGGTCGTCGACGGAGAGGTG
GAAATGGTGGTCGCCGTGCACGTGGGCGACATTCTTGCCCACCAACAGAA
CCGCGCGACAACGGAGTGGTTCGCAACCGAGCTAGAGCGAAGGTTCAAGC
TGAAAGACTTAGGTGACGCCGAGTTCTACATGGGTTGTCACGTTACCCGA
AACAGGAAGGCGCACGAGCTGAAACTCGATCAACAGATGTACGTTCAGTC
GATGGCGGAAAGATTCGGTGTCAAGAAGACGAACAGGACACCAGCCATGT
CGGAATCACCAGCACTTTTAAAAGGAGACGAACCGAAGACCCCGGAGGAG
AAGGAAGAGATGAAAACATTCTCATATCGAGAGGCAGTGGGGGCGCTAAT
GTGGGCGGCAACGACGATGCGACCGAATATAGCGTGCGTAGTACGTGCCG
TTGCAAGGTTCAGCGATAACCCCGGCCCAGCACACAGAAGACGGTGGTTA
AGATAG
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