mRNA_H-paniculata_contig1216.1372.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 236 bits (602), Expect = 6.160e-69 Identity = 147/425 (34.59%), Postives = 226/425 (53.18%), Query Frame = 1 Query: 262 PTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWL---------R*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476 PT A S+R+L+A A ++ LR+FD ++A +++++DE+V++ +PE G + KLNK++YGL QA R W+ + + F Q AD C+FR + +G V + + VHV DI + + + F +L +K+LGD +Y GC R+ A LK+ QQ Y + + FGV+ P P LK E ++ EE+ ++ +RE +G+LMW AT RP+IA VRAVAR+ +P H R L I + R + A +E + D D + R V GG+++ G ISW SR Q+ L +EAEYV L Q+ FM P + + VFE+N+GAI+LA N ++ +K+I V+HH + + + + + +V + QHAD LTK L G F H Sbjct: 14 PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQ-FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPL----PVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 241 bits (616), Expect = 9.670e-69 Identity = 162/458 (35.37%), Postives = 244/458 (53.28%), Query Frame = 1 Query: 163 KVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWLR*CSICY-----TRWNGASHMVEA----YTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ-----------IQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476 +VS GK+ K K +LVA+GF Q GV Y E PT SIR+L A A D E +FD E+A +++ +D EV++++P G V +L+K++YGL QA R ++ + D+ I FEQS +DPC+ ++ EV ++A+HV DIL R E L K+LG+ F++GC R+R+A +++ Q+ Y++S+ ERF V +T S PA L D ++ E E +R+ VG+LMW A RP+I+ VRAVAR S P +H + + + T MV+ Y D D + R G ++++A +++W SR Q+ L +EAEYV + + EF+ PS IG + V E+NEGAI LA N +S +K+I V+HH+ + + G + +V +E QHAD+LTK L G F H Sbjct: 203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLA-EMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRT------SSIPASLTNDY-RSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKALPRGCFEVH 652
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 242 bits (618), Expect = 1.260e-68 Identity = 155/465 (33.33%), Postives = 246/465 (52.90%), Query Frame = 1 Query: 133 VVGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWLR*CS---------ICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ-----------IQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKF 1467 V+ ++K K + GK+ K K +LVA+GF Q GV Y E PT SIR++ A A + EL + D E+A ++ +D EV +++P G + +LNK++YGL QA R + + D+ I FEQS +DPC+ R ++ EV ++A+HV DIL + + E L K+LG+ F++GC +R+R+A +++ Q+ Y++S+ ERF + +T+ PA SPA ++ ++ E EE +RE VG LMW A RP + VR VAR S P + + + S + Y + Y D D + R V G ++++A ++SW S Q+ +L SEAEY+ + + + + PS ++VFE+NEGAI LA N +S R+K+I V+HH + + + G V +V +++QHAD+LTK L F Sbjct: 257 VIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA---SPA----NDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.820e-68 Identity = 163/471 (34.61%), Postives = 246/471 (52.23%), Query Frame = 1 Query: 136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKHIKAL 1488 V + + K +K GK++ +K +LVA+GF QI V Y P P++ SI+++ A A K L ++D ++A A +DEEV++++P + K +AIYGL Q+GR W D + FEQ +ADPC+FRK+VD V M++ ++V DIL + E A+ L ++F K+LG+ +++ GC + R+ +A L++ Q Y+ SM ERF VK T+R PA +P G PK E EE + REA+G++MW +T RP+++ VRAVAR + P H + R I Y R +G + Y D D RS V G + V+S S+ Q +L +EAEY+ + F+ P S ++ V E+N+GAI L N +S RTK+I V++H + +G V +V T +QHADLLTK L H + L Sbjct: 782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1241
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 248 bits (633), Expect = 2.750e-68 Identity = 163/471 (34.61%), Postives = 246/471 (52.23%), Query Frame = 1 Query: 136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKHIKAL 1488 V + + K +K GK++ +K +LVA+GF QI V Y P P++ SI+++ A A K L ++D ++A A +DEEV++++P + K +AIYGL Q+GR W D + FEQ +ADPC+FRK+VD V M++ ++V DIL + E A+ L ++F K+LG+ +++ GC + R+ +A L++ Q Y+ SM ERF VK T+R PA +P G PK E EE + REA+G++MW +T RP+++ VRAVAR + P H + R I Y R +G + Y D D RS V G + V+S S+ Q +L +EAEY+ + F+ P S ++ V E+N+GAI L N +S RTK+I V++H + +G V +V T +QHADLLTK L H + L Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1620
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 248 bits (633), Expect = 2.840e-68 Identity = 163/471 (34.61%), Postives = 246/471 (52.23%), Query Frame = 1 Query: 136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKHIKAL 1488 V + + K +K GK++ +K +LVA+GF QI V Y P P++ SI+++ A A K L ++D ++A A +DEEV++++P + K +AIYGL Q+GR W D + FEQ +ADPC+FRK+VD V M++ ++V DIL + E A+ L ++F K+LG+ +++ GC + R+ +A L++ Q Y+ SM ERF VK T+R PA +P G PK E EE + REA+G++MW +T RP+++ VRAVAR + P H + R I Y R +G + Y D D RS V G + V+S S+ Q +L +EAEY+ + F+ P S ++ V E+N+GAI L N +S RTK+I V++H + +G V +V T +QHADLLTK L H + L Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1783
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 247 bits (630), Expect = 6.960e-68 Identity = 161/459 (35.08%), Postives = 243/459 (52.94%), Query Frame = 1 Query: 136 VGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH---------RRRWLR*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPL 1452 V + + K +K GK++ +K +LVA+GF QI V Y P P++ SI+++ A A K L ++D ++A A +DEEV++++P + K +AIYGL Q+GR W D + FEQ +ADPC+FRK+VD V M++ ++V DIL + E A+ L ++F K+LG+ +++ GC + R+ +A L++ Q Y+ SM ERF VK T+R PA +P G PK E EE + REA+G++MW +T RP+++ VRAVAR + P H + R I Y R +G + Y D D RS V G + V+S S+ Q +L +EAEY+ + F+ P S ++ V E+N+GAI L N +S RTK+I V++H + +G V +V T +QHADLLTK L Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA---TPGADLG--PKR--EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLG--LAVYVDASYADTEDRRS-VSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: UPI0019549DCA (uncharacterized protein LOC120413002 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI0019549DCA) HSP 1 Score: 246 bits (629), Expect = 8.260e-68 Identity = 173/492 (35.16%), Postives = 263/492 (53.46%), Query Frame = 1 Query: 43 EHWKAVEENEMRGMVDNEVWGQRARAKDKLVVGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFP--GAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQ-NRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVK--KTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAH------RRRWLR*CS---ICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ--IQEFMEPSMSIG------AVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPL 1452 EHWK ++E ++ N W + + + +YK K+ G +++YK +LV +G+ Q +GV Y E P S+R L A AA D ++ DA A L+ + EE+Y+E P F V +L KA+YGL Q+ R WN K + + + DPC++ KV G+ + VAV+V D+L +R TE +L R FK+KD+G A++ +G V+R++ E+ LDQ+ YV+++ RF + K TP M+ S L + P T +EKE MK+ Y+EAVG LM+ A + RP+I V ++RF+ NPG H R+LR S + YT+ G + +E ++D D A L+ R + G V +SW + Q+ AL EAEY+ L +QE + G A+ + +N+ AI +A N RTK+I ++HH + DAL+ G+ V YVR+E+Q AD LTKPL Sbjct: 889 EHWKQAMKDEYEALISNGTWELCDLPEGRSAIKCKWVYKTKLDVNGDIDRYKARLVIKGYSQRKGVDYEETYAPVVRYSSLRYLFALAARLDMKVDQMDAITAFLQGELSEEIYMEQPPCFVDGKKRSKVCRLKKALYGLKQSSRVWNKKLDAALRKFDLVCTDYDPCVYTKV-RGDKMLFVAVYVDDVLIFSNCDRWKTE-IKAQLSREFKMKDIGPAKYVLGIRVSRSKD--EIALDQEKYVEAILSRFQMTDCKPVSTP-MNVSEKLTRDACPSTDQEKERMKSVPYQEAVGCLMYLAQSTRPDICYAVNILSRFNSNPGEKHWCGVKHLFRYLRGTSKFRLTYTK--GGASKIEGFSDADWAADLEDRKSITGYVFTAQGAAVSWSCKRQQTVALSTCEAEYMALSAAVQEALWWRRLRGRIESEEAITIHCDNQSAIAVARNGGYHPRTKHIDIRHHFIRDALEKGEVVVDYVRSEEQTADGLTKPL 1373
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 236 bits (602), Expect = 3.740e-67 Identity = 147/425 (34.59%), Postives = 226/425 (53.18%), Query Frame = 1 Query: 262 PTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWL---------R*CSICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVEL-----------QIQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476 PT A S+R+L+A A ++ LR+FD ++A +++++DE+V++ +PE G + KLNK++YGL QA R W+ + + F Q AD C+FR + +G V + + VHV DI + + + F +L +K+LGD +Y GC R+ A LK+ QQ Y + + FGV+ P P LK E ++ EE+ ++ +RE +G+LMW AT RP+IA VRAVAR+ +P H R L I + R + A +E + D D + R V GG+++ G ISW SR Q+ L +EAEYV L Q+ FM P + + VFE+N+GAI+LA N ++ +K+I V+HH + + + + + +V + QHAD LTK L G F H Sbjct: 188 PTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQ-FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPL----PVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 604
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 241 bits (616), Expect = 6.860e-67 Identity = 156/468 (33.33%), Postives = 251/468 (53.63%), Query Frame = 1 Query: 133 VVGTTMLYKRKVSKVGKVEKYKCKLVAQGFPQIEGVHYTEK*LPTPATVSIRMLSATAAAKDGELRYFDAEEALLKANIDEEVYIEVPERF*HFPGAVGKLNKAIYGLVQAGRCWNIKFCDDMTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATELERRFKLKDLGDAEFYMGCHVTRNRKAHELKLDQQMYVQSMAERFGVKKTNRTPAMSESPALLKGDEPKTPEEKEEMKTFSYREAVGALMWAATTMRPNIACVVRAVARFSDNPGPAHRRRWLR*CS---------ICYTRWNGASHMVEAYTDLDLGACLDTRSLVYGGVMVLAKGVISWHSRMQEKTALGISEAEYVELQ-----------IQEFMEPSMSIGAVNVFENNEGAIKLANNKHASHRTKNICVKHHMVLDALDAGKFRVLYVRTEDQHADLLTKPLDMGKFCKH 1476 V+ ++K K + GK+ K K +LVA+GF Q GV Y E PT S R++ A A + EL ++D E+A +++ +D EV++++P G V +LNK++YGL QA R + + ++ I FEQS +DPC+ R ++ EV +VA+HV DIL + ++ E L K+LG+ F++GC R+R+A +++ Q+ Y++S+ ERF V +T+ PA SP ++ ++ E E +RE VG+LMW A RP+I+ VRAVAR S P +H + + + + + N Y D D + + R V G ++++A + W S+ Q+ + SEAEY+ + + +F+ PS ++V E+NEGAI LA N +S R+K+I V+HH + + + G V +V +E+QHAD+LTK L F H Sbjct: 492 VIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA---SPT----NDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 951 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1216.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1216.1372.1 >prot_H-paniculata_contig1216.1372.1 ID=prot_H-paniculata_contig1216.1372.1|Name=mRNA_H-paniculata_contig1216.1372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp MTAIEFEQSRADPCMFRKVVDGEVEMVVAVHVGDILAHQQNRATTEWFATback to top mRNA from alignment at H-paniculata_contig1216:18287..19807+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1216.1372.1 ID=mRNA_H-paniculata_contig1216.1372.1|Name=mRNA_H-paniculata_contig1216.1372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1521bp|location=Sequence derived from alignment at H-paniculata_contig1216:18287..19807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1216:18287..19807+ >mRNA_H-paniculata_contig1216.1372.1 ID=mRNA_H-paniculata_contig1216.1372.1|Name=mRNA_H-paniculata_contig1216.1372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig1216:18287..19807+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |