mRNA_H-paniculata_contig6032.13712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: A0A6H5K508_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K508_9PHAE) HSP 1 Score: 208 bits (529), Expect = 2.650e-60 Identity = 125/259 (48.26%), Postives = 158/259 (61.00%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDS---DDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGACIGIPFTVGSMIVPVLGMAFVEMINLLGMTTGYAKELDNKFDDALWLALYYLLGASSNALMLIQIFLYRAKTAKIRAKV 1026
I GS CLK PQI RVW AKSL GL+P SIYADV L T+ I+ VLK +P+RAY +SV+ L Q ++MVGLLWR+GT + D VT++ ++ + + G G LGRTA AVGS+A+SV C+ Y P R GLL V+S+P IL VQ+PQI KN+RQKHTGE+A LTVLLAF G+ + I T+ LG WL Y+LGA+SNA +L QI+LYRA TAK+R V
Sbjct: 15 IIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGXXXXXXXXALVTKSIKKVKPAGG-GPLGRTAIAVGSVAASVLCVLYLPERLWGLLVVVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIAD----------------LGGDP--------------WLLFNYILGATSNATILAQIYLYRALTAKVRRDV 242
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI) HSP 1 Score: 209 bits (531), Expect = 9.130e-60 Identity = 130/288 (45.14%), Postives = 175/288 (60.76%), Query Frame = 1
Query: 181 QIMASRGGAVSSTDK-------EMIFMTNAERCISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVL---GGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGACIGIPFTVGSMIVPVLGMAFVEMINLLGMTTGYAKELDNKFDDALWLALYYLLGASSNALMLIQIFLYRAKTAKI 1014
QI + RGGAV S++ ++ + A I GS CLK PQI RVW AKSL GL+P SIYADV L T+ I+ VLK +P+RAY +SV+ L Q ++MVGLLWR+G ++++V + GG+ VT++ ++ + + G G +GRTA GS+A+SV C+ Y P R GLL ++S+P IL VQ+PQI KN+RQKHTGE+A LTVLLAFVG+ I I T+ LG WL Y+LGA+SNA +L QI+LYRA TA +
Sbjct: 49 QIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKKNPIRAYGESVVVLFQTLVMVGLLWRFG---AEEEVAVSDGGGDEEALVTKSTKKVKPAGG-GPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIAD----------------LGGDP--------------WLLFNYVLGATSNATILAQIYLYRALTATV 302
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: A0A5D6XZP8_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 9.050e-17 Identity = 59/177 (33.33%), Postives = 93/177 (52.54%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGA 789
I GS LK+PQI+++ RA+ + GL+P S Y +VLL ++ ++ VLK P+ + ++++ L Q I++V LLW Y T + A TR A V +A + L P + LL P+ +V +IPQIV NF+Q HTG++A +T++L F G+
Sbjct: 70 IIAGSLVLKLPQILKILRARDVTGLTPASFYLEVLLFVSSTVYNVLKGYPVSTWGENLIILAQNIVLVLLLWTYVTP-----------------KIAYSTR----------LALVVAFVAVTAGAL-LTPPEYQWLLASAGIPVSIVARIPQIVSNFKQGHTGQLAFVTLVLNFGGS 218
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: A0A836CGJ2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.800e-16 Identity = 66/202 (32.67%), Postives = 99/202 (49.01%), Query Frame = 1
Query: 205 AVSSTDKEMIFMTNAERCISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGACIGIPFT 810
A ++ +IF A I VGS +K+PQI+R+ A+S+ GLS + Y +V L+ I+ K P AY ++ LVQ +I+V L+WRY + A+T A VG+ + P R + LL + S+P+IL+V IPQI+ N RQ HTG+M+ +TV L G+ I + T
Sbjct: 39 ATAAETARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRYSAPPMKHRAMA------AMTATF--------------VALCVGTYS--------LPDRWQPLLVLSSTPLILLVTIPQILVNARQGHTGQMSAITVALKLGGSAIRLATT 212
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: W4FS73_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FS73_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.980e-16 Identity = 59/178 (33.15%), Postives = 98/178 (55.06%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAF-AVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGA 789
I VGS LK+PQI+++ A ++AGL+P S Y +V+ + ++ VL+ P+ ++ +S + L+Q +I+V LLW Y + AA+ T+ L+G AF A+G A + Y P + +L P+ ++ +IPQI+ NF+Q HTG++A LT+ L F G+
Sbjct: 58 IIVGSFILKLPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVLRGYPISSWGESAVILIQNVILVLLLWYY-------------------SGAAKSTQ------LVGVVAFVALG------AGMFYLPSEFDWVLPSAGIPLSVMARIPQILSNFKQGHTGQLAFLTLFLNFGGS 204
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: A0A6G0XK20_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK20_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 6.760e-16 Identity = 72/220 (32.73%), Postives = 112/220 (50.91%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGACIGIPFTV---GSMIVPVLGMAFVEMIN--LLGMTTGYAKELD 903
I +GS LK+PQI+++ A ++AGLSP S Y +V+ + I+ V++ P+ + +S + LVQ +I+V LLW Y + A + T+ LLG F VG A + + P + +L S P+ + +IPQI+ NFRQ HTG++A LT+ L F G+ + T+ G +V +LG A ++N LL Y K D
Sbjct: 48 IILGSFVLKLPQILKIVAAGNVAGLSPSSFYLEVVTFLASVIYNVIRGYPISTWGESAVILVQNVILVVLLWYYSS-------------------APKTTQ------LLGVVTF-VGLGAG----MYHLPSEFDWVLPSASIPLSVAARIPQIISNFRQGHTGQLAFLTLFLNFGGSAARLFTTLQETGDQVV-LLGFAISMLLNGTLLTQILIYWKATD 236
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: A0A024TCH2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCH2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.250e-15 Identity = 60/178 (33.71%), Postives = 95/178 (53.37%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAF-AVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGA 789
I +GS LK+PQI+++ A ++AGL+P S Y +V+ + ++ VLK P+ ++ +S + L+Q I+V LLW Y + AA+ T+ LG F A+G A + Y P LL S P+ ++ +IPQI+ NF+Q HTG++A LT+ L F G+
Sbjct: 48 IILGSFILKLPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVLKGYPISSWGESAVILIQNAILVLLLWHY-------------------SGAAKSTQ------FLGVVTFVALG------AGMFYLPSEFNWLLPSASIPLSVMARIPQIMSNFQQGHTGQLAFLTLFLNFGGS 194
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: D0NCC3_PHYIT (Mannose-P-dolichol utilization defect 1 protein homolog n=11 Tax=Phytophthora TaxID=4783 RepID=D0NCC3_PHYIT) HSP 1 Score: 87.0 bits (214), Expect = 1.870e-15 Identity = 58/177 (32.77%), Postives = 95/177 (53.67%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGA 789
I GS LK+PQI+++ AK + GL+P + Y +V+L ++ I+ VL+ PL + ++V+ L Q II+V LLW + T + SP GL+ A +IA+ + + P + LL P+ +V +IPQI+ NF+Q HTG++A +T++L F G+
Sbjct: 69 IITGSLILKLPQILKILSAKDVTGLTPSAFYMEVVLYLSSTIYNVLRGYPLSTWGENVVILAQNIILVLLLWSFYTP---------------------KIAVSPRFGLV----LAFAAIAAGMFSI---PDEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLALITLVLNFAGS 217
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: A0A8K1CVN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVN7_PYTOL) HSP 1 Score: 86.3 bits (212), Expect = 2.340e-15 Identity = 57/176 (32.39%), Postives = 90/176 (51.14%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVG 786
I GS LK+PQI+++ AK + GL+P S Y +VLL + ++ VLK P+ + ++++ LVQ II+V LLW Y T P + R A V +A + L P + +L P+ +V +IPQ++ NF+Q HTG++A +T++L F G
Sbjct: 47 IITGSFVLKLPQILKIIGAKDVTGLTPTSFYMEVLLYVSGTVYNVLKGYPVSTWGENLVILVQNIILVLLLWAYST---------------------------PKIPISTRLALVVTFVAVTTGML-LTPPELQWVLVSAGIPVTIVARIPQVISNFKQGHTGQLAFVTLVLNFGG 194
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Match: A0A7S2V5B2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5B2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.050e-14 Identity = 61/232 (26.29%), Postives = 111/232 (47.84%), Query Frame = 1
Query: 259 ISVGSACLKVPQIIRVWRAKSLAGLSPVSIYADVLLLGTNAIFEVLKPDPLRAYRKSVMGLVQAIIMVGLLWRYGTTDSDDDVVLGGESGGAVTRAARRTRSSPGRGLLGRTAFAVGSIASSVACLRYFPRRGEGLLGVISSPMILVVQIPQIVKNFRQKHTGEMAGLTVLLAFVGAC---------------IGIPFTVGSMIVPVLGMAFVEMINLLGMTTGYAKELDNK 909
+S+GS LK+PQI+++ ++KS+ GLSP S Y++ L ++ + P A+ + + VQ +++VGLLWRY + P GL R A + AC Y P + L+ + + P+I++ ++PQI+ NF+ HTG++A +TV + G+ + + ++VGS + + F++M+ T + K++D K
Sbjct: 46 LSLGSLGLKLPQILKILKSKSVEGLSPSSFYSEEALYVLCLMYHFIIGSPWSAFGEVISIFVQNLVLVGLLWRY---------------------------AKPTIGLTSRLLVLAVFAAIAAACW-YCPPSLQPLIPLANVPVIVMARVPQILLNFKNGHTGQLAFITVCMNAFGSLSRVLTTIIEVGGDWGLVLSYSVGSSLNTFI---FLQMLYYWKNTENFQKQMDKK 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6032.13712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6032.13712.1 >prot_H-paniculata_contig6032.13712.1 ID=prot_H-paniculata_contig6032.13712.1|Name=mRNA_H-paniculata_contig6032.13712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp MGCLRRGFVLLLSLIASTLGLSALVLPQLSVRQPSFRSMDIGSPPKYSQIback to top mRNA from alignment at H-paniculata_contig6032:840..12912- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6032.13712.1 ID=mRNA_H-paniculata_contig6032.13712.1|Name=mRNA_H-paniculata_contig6032.13712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12073bp|location=Sequence derived from alignment at H-paniculata_contig6032:840..12912- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6032:840..12912- >mRNA_H-paniculata_contig6032.13712.1 ID=mRNA_H-paniculata_contig6032.13712.1|Name=mRNA_H-paniculata_contig6032.13712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig6032:840..12912- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |