mRNA_H-paniculata_contig60319.13711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60319.13711.1
Unique NamemRNA_H-paniculata_contig60319.13711.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: D7G1M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M4_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-13
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   19 LQMMDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            +QMMD+G  APW +Q +CQPLDDIRGYFGEK+AFYFAW
Sbjct:  444 MQMMDHGNSAPWFLQLFCQPLDDIRGYFGEKMAFYFAW 481
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.270e-9
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   19 LQMMDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            +  MD G R  W M+P+ QPLDD+R YFGEKLA YFAW
Sbjct: 1188 MDAMDEGQRVSWYMRPFSQPLDDVRCYFGEKLAMYFAW 1225
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: A0A7S2BNC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNC7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.940e-8
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:   31 DNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            DNG   PW M PW QPL +IR YFGE +A YFAW
Sbjct:  203 DNGSYCPWPMLPWAQPLSEIREYFGESVAMYFAW 236
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: F0Y753_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y753_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 3.770e-8
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   28 MDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            ++ G R PW ++PW QPL +IR Y+GEK+A YFAW
Sbjct:   32 IEKGRRCPWYLKPWSQPLMEIRSYYGEKIALYFAW 66
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: E9FRS9_DAPPU (Anoctamin n=8 Tax=Daphnia TaxID=6668 RepID=E9FRS9_DAPPU)

HSP 1 Score: 53.9 bits (128), Expect = 3.410e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   34 NGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            +GY A WS  P  QPLD++R YFGEK+AFYFAW
Sbjct:  295 HGYWARWSKWPKYQPLDNVREYFGEKIAFYFAW 327
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: A0A7S3USK5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USK5_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-6
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 1 
Query:   67 WCQPLDDIRGYFGEKLAFYFAW 132
            WCQPLDDIR Y+GEKLA YFAW
Sbjct:   72 WCQPLDDIRSYYGEKLALYFAW 93
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: A0A8J2S5F9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5F9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.710e-6
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:   28 MDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            M  G   P  M+PW QPL ++R YFGEK+A YFAW
Sbjct:  362 MLKGRSCPCYMRPWAQPLMEVRAYFGEKVALYFAW 396
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: A0A7S2RR19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RR19_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.710e-6
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:   46 APWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            AP  +  +CQPLDDIR YFGEK+AFY+AW
Sbjct:   29 APLLLYWFCQPLDDIRSYFGEKVAFYYAW 57
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: A0A7S2G906_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G906_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 1.830e-5
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   25 MMDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            +M+   RAPW   P  QPLD+IRGYFGE++A YFA+
Sbjct:  103 LMEKWCRAPWRWLP-DQPLDEIRGYFGERIALYFAF 137
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BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Match: UPI001386F243 (anoctamin-9 isoform X3 n=1 Tax=Mustela erminea TaxID=36723 RepID=UPI001386F243)

HSP 1 Score: 48.5 bits (114), Expect = 2.740e-5
Identity = 19/29 (65.52%), Postives = 21/29 (72.41%), Query Frame = 1 
Query:   46 APWSMQPWCQPLDDIRGYFGEKLAFYFAW 132
            A W     CQP+DDIR YFGEK+A YFAW
Sbjct:  145 AQWRNMVRCQPIDDIRDYFGEKVALYFAW 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60319.13711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G1M4_ECTSI1.040e-1376.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL56_9STRA2.270e-963.16Calcium-activated chloride channel-domain-containi... [more]
A0A7S2BNC7_9STRA1.940e-864.71Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0Y753_AURAN3.770e-857.14Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
E9FRS9_DAPPU3.410e-766.67Anoctamin n=8 Tax=Daphnia TaxID=6668 RepID=E9FRS9_... [more]
A0A7S3USK5_HETAK3.050e-686.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2S5F9_9STRA5.710e-657.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2RR19_9STRA5.710e-668.97Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2G906_9EUKA1.830e-558.33Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI001386F2432.740e-565.52anoctamin-9 isoform X3 n=1 Tax=Mustela erminea Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60319contigH-paniculata_contig60319:821..952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue3.1e-10
Seed eggNOG ortholog2880.D7G1M4
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size132
Cds size108
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930671.7099078-UTR-H-paniculata_contig60319:820..8441622930671.7099078-UTR-H-paniculata_contig60319:820..844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60319 821..844 +
1691481399.7951255-UTR-H-paniculata_contig60319:820..8441691481399.7951255-UTR-H-paniculata_contig60319:820..844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60319 821..844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930671.7246315-CDS-H-paniculata_contig60319:844..9521622930671.7246315-CDS-H-paniculata_contig60319:844..952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60319 845..952 +
1691481399.805594-CDS-H-paniculata_contig60319:844..9521691481399.805594-CDS-H-paniculata_contig60319:844..952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60319 845..952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60319.13711.1prot_H-paniculata_contig60319.13711.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60319 845..952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60319.13711.1

>prot_H-paniculata_contig60319.13711.1 ID=prot_H-paniculata_contig60319.13711.1|Name=mRNA_H-paniculata_contig60319.13711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=36bp
MMDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAW
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mRNA from alignment at H-paniculata_contig60319:821..952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60319.13711.1 ID=mRNA_H-paniculata_contig60319.13711.1|Name=mRNA_H-paniculata_contig60319.13711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig60319:821..952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACAAAATCCGGCGATTTGCAGATGATGGACAACGGGTACCGAGCGCC
GTGGTCCATGCAACCTTGGTGTCAACCTCTCGACGACATTCGCGGCTACT
TCGGAGAGAAACTCGCCTTCTACTTCGCGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig60319:821..952+

>mRNA_H-paniculata_contig60319.13711.1 ID=mRNA_H-paniculata_contig60319.13711.1|Name=mRNA_H-paniculata_contig60319.13711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at H-paniculata_contig60319:821..952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGACAACGGGTACCGAGCGCCGTGGTCCATGCAACCTTGGTGTCA
ACCTCTCGACGACATTCGCGGCTACTTCGGAGAGAAACTCGCCTTCTACT
TCGCGTGGATGATGGACAACGGGTACCGAGCGCCGTGGTCCATGCAACCT
TGGTGTCAACCTCTCGACGACATTCGCGGCTACTTCGGAGAGAAACTCGC
CTTCTACTTCGCGTGG
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