mRNA_H-paniculata_contig60315.13710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60315.13710.1
Unique NamemRNA_H-paniculata_contig60315.13710.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60315.13710.1 vs. uniprot
Match: A5AIQ4_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AIQ4_VITVI)

HSP 1 Score: 53.9 bits (128), Expect = 3.860e-6
Identity = 34/93 (36.56%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:    7 WNSDTGTTDHMASDDAAFENYTPALPGTMCEIANGTLVPVEGWGRLVLLVSQPGKTSSHPP--------DTPQYNGVAERRLGLLREKPIALI 261
            W  D+G TDHM S    F  YTP+       +ANG+LV V G+  + +  +   K   H          +TPQ NGVAER+ G L +   AL+
Sbjct:   63 WIIDSGATDHMTSKSQLFHTYTPSPSNKKIAVANGSLVTVAGFEDIYIAPTLILKNVLHGGILHDSSCVNTPQQNGVAERKNGHLLDTTRALL 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60315.13710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A5AIQ4_VITVI3.860e-636.56Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60315contigH-paniculata_contig60315:332..643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930671.66506-CDS-H-paniculata_contig60315:331..6431622930671.66506-CDS-H-paniculata_contig60315:331..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60315 332..643 +
1691481399.7835352-CDS-H-paniculata_contig60315:331..6431691481399.7835352-CDS-H-paniculata_contig60315:331..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60315 332..643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60315.13710.1prot_H-paniculata_contig60315.13710.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60315 332..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60315.13710.1

>prot_H-paniculata_contig60315.13710.1 ID=prot_H-paniculata_contig60315.13710.1|Name=mRNA_H-paniculata_contig60315.13710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
EHWNSDTGTTDHMASDDAAFENYTPALPGTMCEIANGTLVPVEGWGRLVL
LVSQPGKTSSHPPDTPQYNGVAERRLGLLREKPIALIQDQTERDSKKLWV
GAMN
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mRNA from alignment at H-paniculata_contig60315:332..643+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60315.13710.1 ID=mRNA_H-paniculata_contig60315.13710.1|Name=mRNA_H-paniculata_contig60315.13710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig60315:332..643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACACTGGAACTCAGACACTGGCACGACAGACCACATGGCGTCGGATGA
CGCTGCGTTCGAGAACTACACTCCAGCGCTCCCGGGGACCATGTGTGAAA
TCGCCAATGGGACATTGGTGCCGGTAGAGGGGTGGGGGCGCCTTGTGCTT
CTAGTAAGTCAACCGGGGAAAACGAGCTCACACCCCCCGGATACGCCGCA
ATACAACGGCGTTGCCGAAAGACGGCTGGGTCTACTCCGCGAGAAACCGA
TCGCATTGATACAGGATCAGACGGAGAGGGACAGCAAGAAACTATGGGTG
GGGGCGATGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig60315:332..643+

>mRNA_H-paniculata_contig60315.13710.1 ID=mRNA_H-paniculata_contig60315.13710.1|Name=mRNA_H-paniculata_contig60315.13710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig60315:332..643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACACTGGAACTCAGACACTGGCACGACAGACCACATGGCGTCGGATGA
CGCTGCGTTCGAGAACTACACTCCAGCGCTCCCGGGGACCATGTGTGAAA
TCGCCAATGGGACATTGGTGCCGGTAGAGGGGTGGGGGCGCCTTGTGCTT
CTAGTAAGTCAACCGGGGAAAACGAGCTCACACCCCCCGGATACGCCGCA
ATACAACGGCGTTGCCGAAAGACGGCTGGGTCTACTCCGCGAGAAACCGA
TCGCATTGATACAGGATCAGACGGAGAGGGACAGCAAGAAACTATGGGTG
GGGGCGATGAACGAACACTGGAACTCAGACACTGGCACGACAGACCACAT
GGCGTCGGATGACGCTGCGTTCGAGAACTACACTCCAGCGCTCCCGGGGA
CCATGTGTGAAATCGCCAATGGGACATTGGTGCCGGTAGAGGGGTGGGGG
CGCCTTGTGCTTCTAGTAAGTCAACCGGGGAAAACGAGCTCACACCCCCC
GGATACGCCGCAATACAACGGCGTTGCCGAAAGACGGCTGGGTCTACTCC
GCGAGAAACCGATCGCATTGATACAGGATCAGACGGAGAGGGACAGCAAG
AAACTATGGGTGGGGGCGATGAAC
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