mRNA_H-paniculata_contig60293.13704.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60293.13704.1
Unique NamemRNA_H-paniculata_contig60293.13704.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60293.13704.1 vs. uniprot
Match: D8LH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH23_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.030e-31
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 SGVKNLSEEKLLDGLSRHAGISGDAMADPAVAKAGVTRAATMKPGATVLERVYAVHGALEYFLAENTNVARLYRDDDDK 237
            SG KNL+E +LL+GLS +A ISG+A+ +PA AKAGV RAATMKPGA+VLERVYAVH ALEY+LAENTNVARLYRD DD+
Sbjct:   22 SGKKNLTEAELLEGLSLNAEISGEALVEPAEAKAGVIRAATMKPGASVLERVYAVHSALEYYLAENTNVARLYRDADDE 100
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BLAST of mRNA_H-paniculata_contig60293.13704.1 vs. uniprot
Match: A0A6H5JNT7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.110e-24
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:    4 GVKNLSEEKLLDGLSRHAGISGDAMADPAVAKAGVTRAATMKPGATVLERVYAVHGALEYFLAENTNVARLYRDDDDK 237
            G K L+E KL +GLS +A ISG+A+ +PA AKAGVTRAATMKPGA+VLER+YA+H ALEYFL  N NVARLYR+ DD+
Sbjct:   97 GKKILTEAKLREGLSLNAEISGEALVEPAEAKAGVTRAATMKPGASVLERIYAIHSALEYFLVVNPNVARLYRNADDE 174
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BLAST of mRNA_H-paniculata_contig60293.13704.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.170e-23
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    4 GVKNLSEEKLLDGLSRHAGISGDAMADPAVAKAGVTRAATMKPGATVLERVYAVHGALEYFLAENTNVARLYRDDDDK 237
            G K L+E +L +GLS +A ISG+A+ +PA AKAGVTRAAT+KPGA+VLERVYAVH ALEY+LAEN NVARLY + DD+
Sbjct:  105 GKKILTEAELREGLSLNAEISGEALVEPAEAKAGVTRAATVKPGASVLERVYAVHSALEYYLAENPNVARLYCNADDE 182
[Close]
BLAST of mRNA_H-paniculata_contig60293.13704.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.910e-21
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:   10 KNLSEEKLLDGLSRHAGISGDAMADPAVAKAGVTRAATMKPGATVLERVYAVHGALEYFLAENTNVARLYRDDDDK 237
            KNL+E +LL+GLS +A IS +A+  P  AKAGVTRAATMKPG +VLERVYAVH ALEY+LAE  NVARLY   DD+
Sbjct:   70 KNLAEAELLEGLSINAEISREALVKPVEAKAGVTRAATMKPGVSVLERVYAVHSALEYYLAEKPNVARLYHHADDE 145
[Close]
BLAST of mRNA_H-paniculata_contig60293.13704.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.460e-19
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    4 GVKNLSEEKLLDGLSRHAGISGDAMADPAVAKAGVTRAATMKPGATVLERVYAVHGALEYFLAENTNVARLYRDDDDK 237
            G K L+E +L +GLS +A  SG+A+ +PA AKAGVTRAA+MKP A+VLERVYAVH ALE +LAEN NVA L+R+ DD+
Sbjct:   97 GKKILTEAELREGLSLNAETSGEALVEPAEAKAGVTRAASMKPSASVLERVYAVHSALECYLAENPNVAWLHRNADDE 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60293.13704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LH23_ECTSI2.030e-3175.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNT7_9PHAE4.110e-2469.23CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5K9E0_9PHAE6.170e-2369.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE1.910e-2168.42CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1I2_9PHAE1.460e-1964.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60293contigH-paniculata_contig60293:647..883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930670.755706-CDS-H-paniculata_contig60293:646..8831622930670.755706-CDS-H-paniculata_contig60293:646..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60293 647..883 -
1691481399.3214617-CDS-H-paniculata_contig60293:646..8831691481399.3214617-CDS-H-paniculata_contig60293:646..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60293 647..883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60293.13704.1prot_H-paniculata_contig60293.13704.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60293 647..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60293.13704.1

>prot_H-paniculata_contig60293.13704.1 ID=prot_H-paniculata_contig60293.13704.1|Name=mRNA_H-paniculata_contig60293.13704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
SGVKNLSEEKLLDGLSRHAGISGDAMADPAVAKAGVTRAATMKPGATVLE
RVYAVHGALEYFLAENTNVARLYRDDDDK
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mRNA from alignment at H-paniculata_contig60293:647..883-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60293.13704.1 ID=mRNA_H-paniculata_contig60293.13704.1|Name=mRNA_H-paniculata_contig60293.13704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig60293:647..883- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGTGTAAAAAACCTTTCGGAAGAAAAGCTGCTCGACGGTCTTTCCCG
CCACGCCGGTATTTCGGGGGACGCGATGGCCGATCCGGCGGTGGCAAAGG
CGGGCGTGACCCGCGCGGCTACCATGAAACCCGGCGCGACGGTACTTGAG
CGCGTCTATGCTGTCCATGGCGCGTTGGAATATTTTCTGGCGGAGAACAC
GAACGTGGCGCGACTATACCGCGACGATGACGACAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig60293:647..883-

>mRNA_H-paniculata_contig60293.13704.1 ID=mRNA_H-paniculata_contig60293.13704.1|Name=mRNA_H-paniculata_contig60293.13704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig60293:647..883- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGTGTAAAAAACCTTTCGGAAGAAAAGCTGCTCGACGGTCTTTCCCG
CCACGCCGGTATTTCGGGGGACGCGATGGCCGATCCGGCGGTGGCAAAGG
CGGGCGTGACCCGCGCGGCTACCATGAAACCCGGCGCGACGGTACTTGAG
CGCGTCTATGCTGTCCATGGCGCGTTGGAATATTTTCTGGCGGAGAACAC
GAACGTGGCGCGACTATACCGCGACGATGACGACAAAAGCGGTGTAAAAA
ACCTTTCGGAAGAAAAGCTGCTCGACGGTCTTTCCCGCCACGCCGGTATT
TCGGGGGACGCGATGGCCGATCCGGCGGTGGCAAAGGCGGGCGTGACCCG
CGCGGCTACCATGAAACCCGGCGCGACGGTACTTGAGCGCGTCTATGCTG
TCCATGGCGCGTTGGAATATTTTCTGGCGGAGAACACGAACGTGGCGCGA
CTATACCGCGACGATGACGACAAA
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