mRNA_H-paniculata_contig6029.13703.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: D7G781_ECTSI (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G781_ECTSI) HSP 1 Score: 349 bits (896), Expect = 9.840e-113 Identity = 184/325 (56.62%), Postives = 231/325 (71.08%), Query Frame = 2
Query: 14 MWGLAFILALLMVDKPTVLSFSSPSLLLSTR-------TNKTSRDRLGSISRRNQAIGVGSNEIEPAASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDWLSDPKIFGNYNVAYVAAGKSERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPADTTAADMWKVYT--SARPIKARVLGGVVACGAVVFAARRAFVPTGVLALFSTLLFVSKGGIGPDE 961
MW ++L L++ P VLSFS + L + + S + S + +G + PA AA+LVT +L +IEGT+RGV +PEQQKE++G+I QLN +G KDWL+D ++FGNYNVAYV++G S+R NPAGGR+RGR+GR+LFRTE++FQHL+ P TAVNMV F+ FGLL+GCVTL G FKAI D+PNFV+ASF PPL++F GK GLT R GP SSV LAATYVD+R+R+G GGRGSLFVFTRGG ADT AD WK+Y SARP+KAR+LG ACGAV AR AFVP LAL S +L ++GGI DE
Sbjct: 1 MWNAVWVL--LLITYPPVLSFSFAGVALQSNKAAIRRAARRVSVETAASSAEAGPPPAIGGDG--PANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFRTEEMFQHLVEPTTAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKRGLTIRSGPKSSVRLAATYVDERIRLGMGGRGSLFVFTRGGAADTPNADDWKIYAAESARPVKARILGAAAACGAVAAGARLAFVPATALALVSLVLVATQGGIIRDE 321
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A6H5JIG4_9PHAE (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG4_9PHAE) HSP 1 Score: 254 bits (648), Expect = 8.370e-77 Identity = 135/244 (55.33%), Postives = 171/244 (70.08%), Query Frame = 2
Query: 14 MWGLAFILALLMVDKPTVLSFSSPSLLLSTRTNKTSR-------DRLGSISRRNQAIGVGSNEIEPAASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDWLSDPKIFGNYNVAYVAAGKSERDNPAGGRFRGRLGRALFR--TEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVR 718
MW +IL L+ P VLSFS + L + R + S + +G + PA AA+LVT +L +IEGT+RGV +PEQQKE++G+I QLN +G KDWL+D ++FGNYNVAYV++G S+R NPAGGR+RGR+GR+LFR TE++FQHL+ PATAVNMV F+ FGLL+GCVTL G FKAI D+PNFV+ASF PPL++F GKHGLT R GP SSV LAATYVD+R R
Sbjct: 1 MWNAVWIL--LLTTYPPVLSFSFAGVALQSNKAGVRRAAPRVLVETAASSAEAGPPPPIGGDL--PANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFRQATEEMFQHLVEPATAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERDR 240
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A7S2Y058_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y058_9STRA) HSP 1 Score: 217 bits (553), Expect = 4.380e-61 Identity = 118/270 (43.70%), Postives = 165/270 (61.11%), Query Frame = 2
Query: 167 VGSNEIEPAASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDWLSDPKIFGNYNVAYVAAGK--SERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIE--DRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPADTTAADMWKVYTSARPIKARVLGGVVACGAVVFAARRAFVPTGV-LALFSTLLFVSKGGIGPDE 961
V ++P S + EIL+ + TDRGV AS EQ+ +++GL+ ++ + + D LSD +IFGNYNVAYV+ GK S++ NPAGG FRG++GR F+T +FQHL+AP +NMV F++ G GC TL GTF+ I D PN VRA F+PP ++ T ++GP S V L YVDD+VR+G+GGRGSLF+FTR GPA A++W+ Y+ I +VLG ++ + A TG+ + + F SKGGI DE
Sbjct: 102 VSQETLQPLESE----QAIEEILKIVPETDRGVLASEEQRTKIDGLLEKVENLNTNADTLSDERIFGNYNVAYVSTGKAPSQKGNPAGGGFRGKIGRKFFQTTAVFQHLVAPNQVINMVQFKMLGRFPGCTTLMGTFEKINVPDLPNAVRAKFQPPRVTIGSSGKFTLQIGPQSQVTLGTPYVDDKVRVGRGGRGSLFLFTRDGPAQMEQAELWRKYSQVPAINGKVLGVMLMVLGLTLGLSIAR-STGIGMLVAGVYFFFSKGGILSDE 366
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A7S3UXI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXI2_HETAK) HSP 1 Score: 193 bits (491), Expect = 8.970e-54 Identity = 95/180 (52.78%), Postives = 125/180 (69.44%), Query Frame = 2
Query: 221 VTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDWLSDPKIFGNYNVAYVAAGKSERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTR 760
V ++L I GTD G + +P ++ E++ LI L+ G + L+ P+I+GNYNVAYV++G S+R NPAGGRFRG LG+ALFRT +LFQHL+ P VNMV F+L G++ GC TL GTF PN VRA F+PP ++F T +GP S V L+ Y+D RVR+G+GGRGSLFVFTR
Sbjct: 71 VDQLLELIRGTDAGSAVAPGKRAEIDALIEALSAAGGGQRNLARPEIYGNYNVAYVSSGGSQRGNPAGGRFRGALGKALFRTTNLFQHLVEPNRVVNMVQFKLLGVVEGCTTLAGTFAPEGRDPNTVRARFQPPRVTFGRSGRCTLELGPPSEVVLSTPYLDGRVRLGRGGRGSLFVFTR 250
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A383V4T8_TETOB (PAP_fibrillin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4T8_TETOB) HSP 1 Score: 196 bits (498), Expect = 2.370e-53 Identity = 104/215 (48.37%), Postives = 140/215 (65.12%), Query Frame = 2
Query: 209 AADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDW--LSDPKIFGNYNVAYVAAGKSERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIE----------DRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPADTTAADMWKVYTSAR 817
AAD+V+ IL +++GTD G+S PEQ++EV+ LI+QL G S+ + +P +FGNYNVAY ++G +R PAGGRFRGRLGR LF+T +FQ ++ P A N V+F+LFG+L G V L GT ++ + VR FEPP+LS GL FR+GP SSV L+ Y+D+RVR+G+G RGSLFVFTRGG AD D + S +
Sbjct: 50 AADIVSTILDKVQGTDGGISLQPEQKREVDALISQLEAAGRSQQPRPMQNPLLFGNYNVAYTSSGDDQRGQPAGGRFRGRLGRLLFQTTGVFQSVLQPDIATNKVTFKLFGVLPGAVGLRGTVVPVQAGQPHGRGTAGEGDTVRVLFEPPVLSLGS--GLHFRIGPPSSVQLSTPYLDERVRLGRGSRGSLFVFTRGGAADKAGMDQVGIQPSTK 262
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A7S1TG77_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TG77_9RHOD) HSP 1 Score: 191 bits (484), Expect = 4.440e-52 Identity = 119/278 (42.81%), Postives = 158/278 (56.83%), Query Frame = 2
Query: 104 RTNKTSRDRLGSISRRNQAIGVGSNEIEPAASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDWLSDPKIFGNYNVAYVAAGKSERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKA---IEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPADTTAADMWKVYTSARPIKARVLGGVVACGAVVFAARRAFVPTGVLALFSTLL 928
R N+ R G I RR +GV ++ A V +L IE TD G S E++ ++G+I QL + +D LSDP +FGN+ VAYV+A ++ PAGGRFR R G+ +FRT+ LFQH+++P AVNMV F LFGL+ GCV L G K I+ PN VR F+ P +S G F GPTS V L TY+DDR+R+ +G RGSLFVF RGG A AD WK RP+ L +V G +V +A F+P + A ++ LL
Sbjct: 27 RKNEVRRGGSGEIVRRGVGVGVSTD----------AMAKVDRLLNLIEDTDSGAVVSKEERSMIDGIIFQLEDERAGEDLLSDPLLFGNFKVAYVSARQNYA--PAGGRFRSRFGKLVFRTKGLFQHVLSPDRAVNMVRFALFGLIGGCVVLTGRLKKLPPIQGLPNPVRVEFDRPRISLAGA---VFEFGPTSEVVLGITYLDDRIRLARGARGSLFVFHRGGDALLPVADSWKPIADTRPLPN--LPALVFLGGLVASAF--FLPPAITAAYAGLL 285
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: D8TNC6_VOLCA (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TNC6_VOLCA) HSP 1 Score: 183 bits (464), Expect = 1.270e-49 Identity = 98/200 (49.00%), Postives = 132/200 (66.00%), Query Frame = 2
Query: 185 EPAASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDW--LSDPKIFGNYNVAYVAAGKS-ERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPAD 775
+P++S +A LV ++L+ IEGTD G+ SP+ + V+ L+ +L +G ++ L +P ++GNYNVAY + GKS E PAGGRFRGR+GRALFRT LFQ ++ P A N V F+LFG L G V L G D + V+ FEPP+LS + L ++G SSV L TY+D+RVR+G+G RGSLFVFTRGG AD
Sbjct: 75 QPSSSADEARQLVDQVLKTIEGTDSGLQISPQARAHVDALLERLEVLGAAQQPRPLDNPLLWGNYNVAYTSVGKSQEHGEPAGGRFRGRIGRALFRTAGLFQSVLKPDLATNKVEFRLFGFLPGYVGLRGKVLPQGDTGDTVQVLFEPPMLSIANR--LHLKIGRFSSVVLTTTYLDERVRLGRGSRGSLFVFTRGGAAD 272
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A836B2N0_CHLIN (PAP_fibrillin domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A836B2N0_CHLIN) HSP 1 Score: 185 bits (469), Expect = 2.290e-49 Identity = 102/214 (47.66%), Postives = 135/214 (63.08%), Query Frame = 2
Query: 158 AIGVGSNEIEPAASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDW--LSDPKIFGNYNVAYVAAGKS-ERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPADTTAAD 790
A+ + AA+ A +V E+L+ IEGTD G+S P +K V+GL+ +L +G ++ L P ++GNYNVAY + G+S ER PAGGRFRG++GRALFRT LFQ ++ P A N V F+LFG+L G V L G + + V+ FEPP+LS K L +G TSSV L TY+D+R+R+GKG RGSLFVFTRGG AD D
Sbjct: 33 ALDASVSNAAHAAAPADARAIVDEVLKAIEGTDSGLSIDPATRKHVDGLLDRLEGLGAAQQPRPLGSPLLWGNYNVAYTSVGRSQERGEPAGGRFRGKIGRALFRTAGLFQSVLQPDIATNKVEFKLFGMLPGFVGLRGRVVPQGETGDTVQVLFEPPVLSIAEK--LFLCIGRTSSVVLTTTYLDERIRLGKGSRGSLFVFTRGGAADAAGMD 244
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A835XUG7_9CHLO (PAP_fibrillin domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XUG7_9CHLO) HSP 1 Score: 187 bits (475), Expect = 2.370e-49 Identity = 101/215 (46.98%), Postives = 134/215 (62.33%), Query Frame = 2
Query: 152 NQAIGVGSNEIEPAASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDW--LSDPKIFGNYNVAYVAAGKSERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPADTTAAD 790
N + S++ R A +V IL I TD G + SPE++ EV+ L+ QL +IG ++ L +P ++GNYNVAY ++GK + PAGGRFRGR+G+ALFRT LFQ ++ P A N V F+LFG + G V L G D + V+ FEPP+L+ GL R+G TSSV L+ TY+D+RVR+GKG RGSLFVFTRGG AD D
Sbjct: 39 NNGVTAESSKAAVTPPRTDATAIVDRILESIRDTDSGAAISPEKRAEVDELLEQLEQIGAAQQPRPLDNPLLWGNYNVAYTSSGKGQYGEPAGGRFRGRVGKALFRTAGLFQSVLQPDIATNKVEFKLFGFIPGFVGLRGKVLPEGDEGDTVQVLFEPPVLTI--GEGLHLRIGRTSSVVLSTTYLDERVRLGKGSRGSLFVFTRGGAADAAGMD 251
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Match: A0A2K3D377_CHLRE (PAP_fibrillin domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D377_CHLRE) HSP 1 Score: 185 bits (470), Expect = 3.090e-49 Identity = 101/203 (49.75%), Postives = 133/203 (65.52%), Query Frame = 2
Query: 191 AASRGKAADLVTEILRRIEGTDRGVSASPEQQKEVNGLIAQLNEIGESKDW--LSDPKIFGNYNVAYVAAGKS-ERDNPAGGRFRGRLGRALFRTEDLFQHLIAPATAVNMVSFQLFGLLRGCVTLHGTFKAIEDRPNFVRASFEPPLLSFFGKHGLTFRVGPTSSVALAATYVDDRVRIGKGGRGSLFVFTRGGPADTTAAD 790
AA+ A +V E+L+ IEGTD G+S P +K V+GL+ +L +G ++ L P ++GNYNVAY + G+S ER PAGGRFRG++GRALFRT LFQ ++ P A N V F+LFG+L G V L G D + V+ FEPP+L+ K L +G TSSV L+ TY+D+R+R+GKG RGSLFVFTRGG AD D
Sbjct: 74 AAAPEDARAIVDEVLKAIEGTDSGLSIDPATRKHVDGLLDKLEALGAAQQPRPLDSPLLWGNYNVAYTSVGRSQERGEPAGGRFRGKIGRALFRTAGLFQSVLQPDIATNKVEFKLFGMLPGFVGLRGRVVPQGDAGDTVQVLFEPPVLAIADK--LFLCIGRTSSVVLSTTYLDERIRLGKGSRGSLFVFTRGGAADAAGMD 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6029.13703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6029.13703.1 >prot_H-paniculata_contig6029.13703.1 ID=prot_H-paniculata_contig6029.13703.1|Name=mRNA_H-paniculata_contig6029.13703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=320bp MWGLAFILALLMVDKPTVLSFSSPSLLLSTRTNKTSRDRLGSISRRNQAIback to top mRNA from alignment at H-paniculata_contig6029:3767..11327+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6029.13703.1 ID=mRNA_H-paniculata_contig6029.13703.1|Name=mRNA_H-paniculata_contig6029.13703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7561bp|location=Sequence derived from alignment at H-paniculata_contig6029:3767..11327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6029:3767..11327+ >mRNA_H-paniculata_contig6029.13703.1 ID=mRNA_H-paniculata_contig6029.13703.1|Name=mRNA_H-paniculata_contig6029.13703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1920bp|location=Sequence derived from alignment at H-paniculata_contig6029:3767..11327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |