mRNA_H-paniculata_contig6028.13702.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6028.13702.1
Unique NamemRNA_H-paniculata_contig6028.13702.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6028.13702.1 vs. uniprot
Match: A0A2V3ILY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY8_9FLOR)

HSP 1 Score: 73.9 bits (180), Expect = 5.810e-13
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = -2 
Query:   65 KKITVS---FFGLTIGPDTTRYTFATSTGRRLF-LTQEFEVKTFLLAVKQYKPAA-ACPGTRAEELVQLWAEHALQEFDLDWVMIAGAVTDNGSDVRFAFPTIPGVLREWCIPQMLNRVMIDAFGLSLS 436
            K+I+V+   F  + +   T+R +     G +LF +++E+EVK  LLAV+ + P+    PG    +++QLW    + EF++ +  I  + +D GSDV+     +     EWC+P MLN V++ AFG  L+
Sbjct:   77 KEISVTPLAFLHINVNLWTSRLSKDRFFGIQLFYVSREWEVKAVLLAVRHFCPSGNLLPGRSLSDILQLWTNKIILEFNVSYDKILSSTSDTGSDVKRLCSVLIPESWEWCLPHMLNCVLVGAFGTGLN 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6028.13702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILY8_9FLOR5.810e-1333.33Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6028contigH-paniculata_contig6028:7832..12342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size467
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6028.13702.1prot_H-paniculata_contig6028.13702.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6028 11992..12342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930670.5077522-UTR-H-paniculata_contig6028:7831..78941622930670.5077522-UTR-H-paniculata_contig6028:7831..7894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6028 7832..7894 +
1691481399.1868825-UTR-H-paniculata_contig6028:7831..78941691481399.1868825-UTR-H-paniculata_contig6028:7831..7894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6028 7832..7894 +
1622930670.530866-UTR-H-paniculata_contig6028:11938..119911622930670.530866-UTR-H-paniculata_contig6028:11938..11991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6028 11939..11991 +
1691481399.1984468-UTR-H-paniculata_contig6028:11938..119911691481399.1984468-UTR-H-paniculata_contig6028:11938..11991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6028 11939..11991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930670.548143-CDS-H-paniculata_contig6028:11991..123421622930670.548143-CDS-H-paniculata_contig6028:11991..12342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6028 11992..12342 +
1691481399.211516-CDS-H-paniculata_contig6028:11991..123421691481399.211516-CDS-H-paniculata_contig6028:11991..12342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6028 11992..12342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6028.13702.1

>prot_H-paniculata_contig6028.13702.1 ID=prot_H-paniculata_contig6028.13702.1|Name=mRNA_H-paniculata_contig6028.13702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MHHSRRTPGIVGKANLTSEPLSVTAPAIITQSRSNSCNACSAQSCTSSSA
LVPGHAAAGLYCFTARRNVLTSNSCVKKRRRPVEVANVYRVVSGPIVKPK
NETVIFFKHKRKRGTF*
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mRNA from alignment at H-paniculata_contig6028:7832..12342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6028.13702.1 ID=mRNA_H-paniculata_contig6028.13702.1|Name=mRNA_H-paniculata_contig6028.13702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4511bp|location=Sequence derived from alignment at H-paniculata_contig6028:7832..12342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGGGAAATTGTGCGACTTGTCAATCGCTGTGGGGAAGAAGGAAGTTA
AGTTAGACTGAAGGTGGGTGATAAGTTCATCAAGATTACTGACTGTATCA
GCACGAGCACTCTAAATTATCACATTGCAGAGAGTCAGTGGAAACAACAA
CAGTACAGTACAGTCTGTACCGCCTCAATAGCTAGACCTTAAGAAGGTAT
TATCCTCCCTTTGGGAACAACAGACAAAAGTACATGGGTGTCATGCAATT
TTCACGGTTCTGTTACTGTAATGTACGGAGCTCAAAACCCGATTGCATGT
TGTATTCATCAATTGGTTCGACGTATCAACAGCAGGAATCTGTGGACTAT
TCACACCTCCGACCAAGGGAAGGATAACCGACAGTTGTCGTTATCACACA
AATTCTTTTTATCTTAGATAGAAATTTGTCCTTCACAGAAAAAAAAGAGA
ATATGTTCTACCCAATCGTTGACCTTCAAATATACTTTTGGTTTCGTATA
CCACGAAAATTTAACCTTCGTGAGATTTTTTTGCATGTGCTTGACATAAC
CGTCTACTGTCGTGTGAAATTTCAGATTCATGTTTGACGAAATCATCCAC
CTTCATGAAAGCTTATGGGCTCATGGTTGAAAGAATTCTTCACCTTCGTG
TATTGTTAATACTTGTACCGTGATTAAAGAAACCTTTGTCCTTCACGCAA
TATTTCAAATAGAGACCGTCGTAATAATTTCAGTTTGGTGTGTCCATTAT
CCCTCGTCCCTCACAGCGAACCTGTTACGCCCTGTAAAAAAAACTGTTCA
CCTTCATGCCAAATATCTCCTCGTGTACTCTTGATCGTTCCCCCTTTACA
AGAAAGTTCTTCGCGGTTTTTGAAAAACCGTTGTCCGTCATTGCTACTTC
TCCTCTAGCATGTCCAATATCCCTTGTCCGTCACAACCAAAATGGTTGAC
CTTCATGCCAAATGTCCCCTCATGTCCCCTTGATCGTTCCCCCTTTACAA
GAAAGTTCTTTGCGGTGTTAAAAAACGTTGTCCTTCATCGCTACTCAGTC
TCCTCCTCAAAAAGTATATTCCGTTCCTCGGAAGCACACTGCTATGTATA
CAGTACCCACGTGTCAACCTATTCTCGAGACATCTTTTTTTGTTTCTCTG
GTTTTTCGCGCATCGCGAGTTATCAACGTCGACCTTTGATCCCAAAATAT
GGGGATCAATAGATATTCATGTGCTTCACGTAATGCGGATTTTTTTTGTG
GTTTCCGTGATAAAATTTGAACGAGTTTTGGGCCTACCTTATCTCCTCCC
CAGATTTTGCCTCTTCGTTTGTTGTTTTTGATCGAACTTCCTATCTCTAA
ATCTCTGGTGGAAAGTGTGACTGCTTCAGTTGTCGAATTTTCAAGAAATT
CCTGGCGCTAAGCTCAAACAACCATATTTTCGACCAAAATACGGTGAACG
GCACCACCCCCCTCCCTCCAAAAAACACGTTTTTCTCCGGTACTGTTCCG
ATAATACAAAATTGGAACATATTTCCTATGAACGACCTATTTCTCATTCC
AATATCTACTGATCCTAAACATTTTGAGTGAAATTGACGAACGTTCGGCG
AAAGATCGAAAAAAATATACAGAATAGTTTGATCCGTGGGCACTGTAGTA
TCTTATGACCGCTATCCTCCTATGCTATACAACTACCATGTATCGTTTAT
GACTAGAACTCACGAAGCTGCAGCTGGCATGTCAGTAAGACATTGCCAAT
CACATTGAAGTGAGTTTGCCTCTTCACCGAGTTCCGTTCTGAGTTTCATA
ACTGAGCAAAATTTTGTCGTCGCTGTCTGCGAAGCCAAGCCCGCTGCACG
ATGCCGCTCCGCTTAGCGTTGAGACTACGAATAGGTCCACAAGCTCCCTC
TAGATGGTCGGATCCCTCAATCTGAAAGGGATGGCGTCTTTGGCCTCGTC
ATTGCCAAGACTGGGGATATCCCTCGGGATGTGGTCATGCACACCACGGA
GGAACATCGCCATCCCAACGCACGCAGGATCCAGGGATCCTCGTTGACGG
TTAATGAACCTGCCTGCTTCGCTGAAGTCTCGCTCCAAAATCGCGGACGA
GGTCGGTGCACCCAACTCACTGCACGCCACCTTACTCAGGAGTCTGAACT
TCTTCCGTACGTACGTACGCCAGAAAGTTCCCAGTTCCTCGTCGCTGTGG
ATTCCCCGATACTGAAGTGGGATCTGTACAACACAACAGGTGAAAGAATA
TATTCGTTGATGAGCCGAGCGCCACGATGTTGCGTGAACACATCATGAGG
ATGAATATCAAGACCTGAGAATGGCTACACCATCGCCTTGCTCGGGGAAC
GGAGAAATTGGACAAGTCGTGGCGACTGAAGCTAGTCCTTAACAATACCA
CACTGAGTGAGCCATAGAGGCCGCGAAGCTGTGGTTTTGCCTGAAGCTTC
CAATGGAAACGGACACGAAACGCGAGCTTCAGCCGAGGCCAAACAAGAAC
AGATATTCACCTTTGCTTGTTGCCAAGTCTTGACTACATGTGTAGGCTCC
TCTTCAGGTGTAATCTCCCTCTCTTCATCGTCCTCGTCGCTTCCACCAAC
TAGGTCATCGAACATGCCGGCCACCATTATATCCAGGTCGTCCTTATCCC
ATGTTGTTGTGAACTTCGAGCGTTTCTGAGCACGGTCGCCATCATCTTCT
CCAGGCCCTCGTACGGCGGAAGCCGCCGCTCGCTCTGCCACTATCATCTC
CTCGACTAGTGCCTTCAGCTGGGCCCACACTTTACGTTTCACGTCATCTA
CGACACTCGTCGTATCCGACAACTTGCCGATGTAGCCGAGGGAGCAGCAA
CAAGGGTTGAAGGCGAGCACCATATCGAAGAGGTGGCTCTCGTTCTTGTA
CCCTTGCCCCCAGCGTTTCTGCCCAAAACGCTTGAACACAGCCTCGAACA
CTTTGACGCGCGTTTCCTTTCCTGTATCAGACAGCTCTGCTTGTGCTTAA
CTGAGACATGCCGTCTTGACCGGCGGCTCCTTGCCCTCGGCGACTGGCGA
GTCGAAATCGTGCGATGAGGAGCATGATGATTCTCCGCACGCCAGGTGAG
CAGGTAATTATGTTCGGCGACTGGCTGTTCTGGATGATGAGCGCCAAAGA
CTTCATCAGGCCGTATATTTCCTGCACCTGCCAAGAAGATGAAAGAGTAC
ACTAAAGATTTAGCGATGGCATGCGCTACATCTCAATTATTGTTGTTTTT
GTGACGCGAGGTACCCCACGCTGAGCTGTACGGCATAGGACTCCATGGTC
CATACTTGTTTGATTTTATCTCTACGCACATGAATTTTCGGCCCAAATGT
GTACCCTGATACGTCAACTCAAGTTTCAGCTGAACGACATTCTATCATCG
TCTCACCTCTTTCTTGGAGGTGATGCCCGTCAGTTCGTCCTCATTTGCCG
AGTAGTGCGATACCAAATCGTTGTAAAATATGAGGAATCGCTCGAGTAGC
ATAGTGCCACTGATGCACCAATGCGCAACAGCCTGTCGCAGTCCTGCCGC
GGGGAGATATCCATATTTCTCCTCATGTGCATCATCGAATGCCACCTGCA
AATCGTACCGTTCATTTCAGAAACACATGTCAACCGCTCCGCATGAGGAC
AAATCAACGAGACACGACAAATTAACACAATTTTGCCGTGTCTCCATCAC
GAAATCAAAAATATGTTTGTCATTTGATTAGCACACACCTAATTAAACGT
TTAACGACATATTTATTCTTCTGTAAAAGTCTAGTATGCGAAACAATGTC
ACAAGTGTAATGATGAGCCAAGTGTCGAACTTCACCGTGCAACAATGGCA
ACGTTTTCAGTATGACACCGAACGTCGTCGTGCACTCGCACACCCATGAG
GATGGGAGTCAACAATTTCCGTTGCTCTCACAATTTTTGACACCAATGCA
TGCATTTTTTTTCAATTCCACCATGCGTCCTTGGGTTCATGCGCATAAAA
TAATTGCACTTCTCTTGCCCTCGCGGTGTAGGACTTATTCATGTGTTCCA
CGATTCTCCGGACTTCGGTGACGACTTTTCGGGCCTTTCGGTTCTTCGAT
TTTCCAGGAGACAGAGAGAGGCCGAAGGCGTCGATCATCACCCGGTTCAG
CATTTGTGGTATGCACCATTCTCGCAGGACGCCAGGAATTGTCGGAAAAG
CGAACCTGACATCAGAGCCGTTATCGGTCACGGCGCCGGCAATCATTACC
CAATCAAGGTCGAACTCCTGCAATGCGTGCTCTGCCCAAAGCTGCACAAG
CTCTTCAGCTCTCGTGCCGGGGCACGCCGCTGCCGGCTTGTACTGCTTCA
CAGCAAGAAGGAACGTCTTGACTTCGAACTCCTGCGTCAAGAAGAGACGA
CGACCTGTAGAGGTAGCAAACGTATATCGAGTGGTGTCAGGCCCAATTGT
CAAGCCAAAAAATGAAACCGTGATTTTTTTCAAACACAAACGAAAACGGG
GGACCTTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6028:7832..12342+

>mRNA_H-paniculata_contig6028.13702.1 ID=mRNA_H-paniculata_contig6028.13702.1|Name=mRNA_H-paniculata_contig6028.13702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig6028:7832..12342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCATTCTCGCAGGACGCCAGGAATTGTCGGAAAAGCGAACCTGAC
ATCAGAGCCGTTATCGGTCACGGCGCCGGCAATCATTACCCAATCAAGGT
CGAACTCCTGCAATGCGTGCTCTGCCCAAAGCTGCACAAGCTCTTCAGCT
CTCGTGCCGGGGCACGCCGCTGCCGGCTTGTACTGCTTCACAGCAAGAAG
GAACGTCTTGACTTCGAACTCCTGCGTCAAGAAGAGACGACGACCTGTAG
AGGTAGCAAACGTATATCGAGTGGTGTCAGGCCCAATTGTCAAGCCAAAA
AATGAAACCGTGATTTTTTTCAAACACAAACGAAAACGGGGGACCTTTTA
GATGCACCATTCTCGCAGGACGCCAGGAATTGTCGGAAAAGCGAACCTGA
CATCAGAGCCGTTATCGGTCACGGCGCCGGCAATCATTACCCAATCAAGG
TCGAACTCCTGCAATGCGTGCTCTGCCCAAAGCTGCACAAGCTCTTCAGC
TCTCGTGCCGGGGCACGCCGCTGCCGGCTTGTACTGCTTCACAGCAAGAA
GGAACGTCTTGACTTCGAACTCCTGCGTCAAGAAGAGACGACGACCTGTA
GAGGTAGCAAACGTATATCGAGTGGTGTCAGGCCCAATTGTCAAGCCAAA
AAATGAAACCGTGATTTTTTTCAAACACAAACGAAAACGGGGGACCTTTT
AG
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