mRNA_H-paniculata_contig6026.13699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6026.13699.1
Unique NamemRNA_H-paniculata_contig6026.13699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.110e-49
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 273
            GAYTGYQLLWVLLLAHILGL+LQSLAAR+GVVTGTHLADVCR HYDRPAALLLW MME+AIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT
Sbjct:  120 GAYTGYQLLWVLLLAHILGLVLQSLAARIGVVTGTHLADVCRTHYDRPAALLLWVMMEVAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 210          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.580e-38
Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 273
            GAYTGYQL+WVLLLAH+ GL+LQS+A+RLGVVTG HLA + R++Y RPA+LLLW M E+AIIGSDIQEVLGSAI LQIL G+PLW GC++T
Sbjct:   68 GAYTGYQLIWVLLLAHMFGLLLQSMASRLGVVTGNHLAGIARLNYKRPASLLLWLMAELAIIGSDIQEVLGSAIALQILTGVPLWAGCVIT 158          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A7S2X831_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X831_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 5.150e-34
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCL 267
            GAYTGYQLLWVL ++  +GL  Q LAARLGVVTG +LA +CR+ Y R A+L LW M E+AIIGSDIQE++GSA+  QILFG PLW+GCL
Sbjct:   65 GAYTGYQLLWVLFMSTAVGLYFQILAARLGVVTGRNLAQMCRLAYPRWASLGLWVMTELAIIGSDIQEIIGSAVAFQILFGFPLWLGCL 153          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A1V9YM96_9STRA (Metal Ion (Mn2-iron) Transporter (Nramp) Family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YM96_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.670e-34
Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLTG 276
            GAY GY+L+WVL  A +LG  LQ+LAARLGVVTG HLA+VC   Y R A+ +LW M EIAI+GSDIQEVLGSAI LQILF +PLW+GCL+TG
Sbjct:   83 GAYGGYELIWVLFGATVLGFFLQTLAARLGVVTGKHLAEVCHTMYPRWASFILWVMTEIAIVGSDIQEVLGSAIALQILFSLPLWLGCLITG 174          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A1V9ZYU6_9STRA (Metal Ion (Mn2-iron) Transporter (Nramp) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU6_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.950e-34
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLTG 276
            GAY+ YQL+WVLL A ++G  LQ+L+ARLGVVTG HLA+VCR  Y R A+ +LW M EIAI+GSDIQEVLGSAI LQILFG+PLW GCL+TG
Sbjct:  571 GAYSRYQLIWVLLGATVMGFFLQTLSARLGVVTGKHLAEVCREMYPRWASYILWIMTEIAIVGSDIQEVLGSAIALQILFGLPLWAGCLVTG 662          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A7J6RAF5_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RAF5_PEROL)

HSP 1 Score: 123 bits (309), Expect = 1.280e-33
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 273
            GA+TGYQ+LWVLLLAHI+GLILQ L+ RL  VTG HLA+ CR  Y R  A +LW M EIAIIGSDIQEVLG+AI  ++LF IPLW G ++T
Sbjct:   91 GAFTGYQMLWVLLLAHIVGLILQVLSCRLAAVTGEHLAEHCRARYPRWTARVLWIMTEIAIIGSDIQEVLGTAIAFRVLFNIPLWAGTIIT 181          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A418EA93_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EA93_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.300e-33
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 273
            GAY GYQL+WVLL A I+G  LQ L+ARLGVVTG +LA++C + Y R  + +LW M E+AI+GSDIQEVLGSAI LQILF +PLW+GCL+T
Sbjct:  101 GAYGGYQLIWVLLGATIMGFFLQVLSARLGVVTGKNLAEMCHLMYPRWTSRVLWFMAEVAIVGSDIQEVLGSAIALQILFKLPLWIGCLIT 191          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A5D6XI84_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI84_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.420e-33
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLTG 276
            GAY GYQL+WVL  A ++G  LQ LAARLGVVTG +LA++C   Y R A+L+LW M EIAI+GSDIQEVLGSAI  Q+LFG PLWVGCL+TG
Sbjct:  106 GAYGGYQLIWVLFAATVMGFFLQVLAARLGVVTGKNLAEMCTARYPRWASLVLWIMTEIAIVGSDIQEVLGSAIAFQLLFGFPLWVGCLVTG 197          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A7J6UGL9_PEROL (Uncharacterized protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6UGL9_PEROL)

HSP 1 Score: 123 bits (308), Expect = 1.440e-32
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLT 273
            GA+TGYQ+LWVLLLAHI+GLILQ L+ RL  VTG HLA+ CR  Y R  A +LW M E+AIIGSDIQEVLG+AI  ++LF IPLW G ++T
Sbjct:   91 GAFTGYQMLWVLLLAHIVGLILQVLSCRLAAVTGEHLAEHCRARYPRWTARVLWIMTEVAIIGSDIQEVLGTAIAFRVLFNIPLWAGTIIT 181          
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Match: A0A8K1CE46_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE46_PYTOL)

HSP 1 Score: 126 bits (317), Expect = 3.420e-32
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAALLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLTG 276
            GAY GYQL+WVL  + ++G  LQ LAARLGVVTG +LA+VC   Y R A+L+LW M EIAIIGSDIQEVLGSAI  QILF  PLW+GCL+TG
Sbjct:   99 GAYGGYQLIWVLFASTVMGFYLQILAARLGVVTGKNLAEVCTSEYPRWASLVLWVMTEIAIIGSDIQEVLGSAIAFQILFNFPLWLGCLITG 190          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6026.13699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF38_ECTSI1.110e-4994.51Divalent metal transporter n=2 Tax=Ectocarpus TaxI... [more]
A0A835YZC9_9STRA3.580e-3874.73Divalent metal transporter n=1 Tax=Tribonema minus... [more]
A0A7S2X831_9EUKA5.150e-3467.42Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A1V9YM96_9STRA8.670e-3469.57Metal Ion (Mn2-iron) Transporter (Nramp) Family n=... [more]
A0A1V9ZYU6_9STRA8.950e-3470.65Metal Ion (Mn2-iron) Transporter (Nramp) Family n=... [more]
A0A7J6RAF5_PEROL1.280e-3367.03Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A418EA93_9STRA5.300e-3365.93Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A5D6XI84_9STRA7.420e-3368.48Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A7J6UGL9_PEROL1.440e-3265.93Uncharacterized protein (Fragment) n=2 Tax=Perkins... [more]
A0A8K1CE46_PYTOL3.420e-3268.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6026contigH-paniculata_contig6026:797..1072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.7e-41
Seed eggNOG ortholog2880.D8LF38
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,ko04142,ko04216,ko04978,map00500,map01100,map04142,map04216,map04978
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transition metal ion homeostasis
EggNOG OGsCOG1914@1,KOG1291@2759
Ec32 ortholog descriptiondivalent metal transporter
Ec32 orthologEc-06_001530.1
EC2.4.1.15,3.1.3.12
COG Functional cat.P
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930670.1732485-CDS-H-paniculata_contig6026:796..10721622930670.1732485-CDS-H-paniculata_contig6026:796..1072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6026 797..1072 -
1691481399.008006-CDS-H-paniculata_contig6026:796..10721691481399.008006-CDS-H-paniculata_contig6026:796..1072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6026 797..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6026.13699.1prot_H-paniculata_contig6026.13699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6026 797..1072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6026.13699.1

>prot_H-paniculata_contig6026.13699.1 ID=prot_H-paniculata_contig6026.13699.1|Name=mRNA_H-paniculata_contig6026.13699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
GAYTGYQLLWVLLLAHILGLILQSLAARLGVVTGTHLADVCRMHYDRPAA
LLLWAMMEIAIIGSDIQEVLGSAIGLQILFGIPLWVGCLLTG
back to top

mRNA from alignment at H-paniculata_contig6026:797..1072-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6026.13699.1 ID=mRNA_H-paniculata_contig6026.13699.1|Name=mRNA_H-paniculata_contig6026.13699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig6026:797..1072- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCATACACAGGCTACCAGCTATTGTGGGTGCTGTTGTTAGCGCACAT CTTAGGCCTGATTCTTCAGTCGCTCGCGGCGCGATTGGGCGTGGTCACGG GGACTCACCTGGCTGACGTCTGCCGCATGCACTACGACCGACCTGCGGCG CTGCTTCTGTGGGCGATGATGGAGATTGCCATTATCGGCAGTGATATCCA GGAAGTTTTGGGGTCTGCGATAGGGCTGCAGATTCTGTTCGGCATTCCGC TCTGGGTTGGCTGTCTTTTAACGGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6026:797..1072-

>mRNA_H-paniculata_contig6026.13699.1 ID=mRNA_H-paniculata_contig6026.13699.1|Name=mRNA_H-paniculata_contig6026.13699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig6026:797..1072- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCATACACAGGCTACCAGCTATTGTGGGTGCTGTTGTTAGCGCACAT
CTTAGGCCTGATTCTTCAGTCGCTCGCGGCGCGATTGGGCGTGGTCACGG
GGACTCACCTGGCTGACGTCTGCCGCATGCACTACGACCGACCTGCGGCG
CTGCTTCTGTGGGCGATGATGGAGATTGCCATTATCGGCAGTGATATCCA
GGAAGTTTTGGGGTCTGCGATAGGGCTGCAGATTCTGTTCGGCATTCCGC
TCTGGGTTGGCTGTCTTTTAACGGGTGGAGCATACACAGGCTACCAGCTA
TTGTGGGTGCTGTTGTTAGCGCACATCTTAGGCCTGATTCTTCAGTCGCT
CGCGGCGCGATTGGGCGTGGTCACGGGGACTCACCTGGCTGACGTCTGCC
GCATGCACTACGACCGACCTGCGGCGCTGCTTCTGTGGGCGATGATGGAG
ATTGCCATTATCGGCAGTGATATCCAGGAAGTTTTGGGGTCTGCGATAGG
GCTGCAGATTCTGTTCGGCATTCCGCTCTGGGTTGGCTGTCTTTTAACGG
GT
back to top