mRNA_H-paniculata_contig6016.13694.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6016.13694.1
Unique NamemRNA_H-paniculata_contig6016.13694.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6016.13694.1 vs. uniprot
Match: D8LC23_ECTSI (Glyco_transf_41 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC23_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.020e-26
Identity = 50/78 (64.10%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   43 RREAGKAHLAVAYWSFDYREHAMGHLTRGVFCSHKVHGRILSVLASYSRNDGSSVRRSAEECAGKFLDLYGVGDVETA 276
            RR A    L VAYWS+DYR+HAMGHLTRG+FCSH+ H R+ +V ASY  +DGS VRRSAE CAGKFLD+   G  E+A
Sbjct:  378 RRAAAGGGLVVAYWSYDYRDHAMGHLTRGLFCSHQAHNRVFAVAASYGHDDGSPVRRSAENCAGKFLDVSLAGHAESA 455
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BLAST of mRNA_H-paniculata_contig6016.13694.1 vs. uniprot
Match: A0A8K1CCR9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCR9_PYTOL)

HSP 1 Score: 53.5 bits (127), Expect = 3.580e-6
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:   67 LAVAYWSFDYREHAMGHLTRGVFCSHKVHGRILSVLASYSRNDGSSVRRSAEECAGKFLDLYGVGDVETA 276
            L +AY +FD+R+H MGHLT G+  +H    R+ S   SY  ND S  R  AE     F D+  V D+E A
Sbjct:  386 LRIAYLTFDFRDHPMGHLTLGLLDTHDS-SRVGSFCYSYGTNDASEWRLRAESQCDIFHDVAMVSDLEAA 454
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6016.13694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC23_ECTSI5.020e-2664.10Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A8K1CCR9_PYTOL3.580e-642.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6016contigH-paniculata_contig6016:11331..12684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue5.4e-22
Seed eggNOG ortholog2880.D8LC23
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.582281-CDS-H-paniculata_contig6016:11330..114771622930669.582281-CDS-H-paniculata_contig6016:11330..11477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6016 11331..11477 +
1691481398.7086358-CDS-H-paniculata_contig6016:11330..114771691481398.7086358-CDS-H-paniculata_contig6016:11330..11477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6016 11331..11477 +
1622930669.5990806-CDS-H-paniculata_contig6016:12552..126841622930669.5990806-CDS-H-paniculata_contig6016:12552..12684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6016 12553..12684 +
1691481398.7255354-CDS-H-paniculata_contig6016:12552..126841691481398.7255354-CDS-H-paniculata_contig6016:12552..12684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6016 12553..12684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6016.13694.1prot_H-paniculata_contig6016.13694.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6016 11331..12684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6016.13694.1

>prot_H-paniculata_contig6016.13694.1 ID=prot_H-paniculata_contig6016.13694.1|Name=mRNA_H-paniculata_contig6016.13694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
EIEKNRVWGNSGGGRREAGKAHLAVAYWSFDYREHAMGHLTRGVFCSHKV
HGRILSVLASYSRNDGSSVRRSAEECAGKFLDLYGVGDVETAM
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mRNA from alignment at H-paniculata_contig6016:11331..12684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6016.13694.1 ID=mRNA_H-paniculata_contig6016.13694.1|Name=mRNA_H-paniculata_contig6016.13694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1354bp|location=Sequence derived from alignment at H-paniculata_contig6016:11331..12684+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTGAGAAAAATCGGGTTTGGGGGAACAGCGGAGGGGGGAGGCGGGA
GGCAGGCAAGGCGCATCTAGCTGTGGCGTATTGGAGCTTTGATTACCGCG
AGCATGCCATGGGGCATTTGACGAGGGGGGTGTTTTGCAGCCACAAGGTG
CGGGAGTGGAATCGAAATTGGGGAAGACAGAGTCGGAGGCCTAGGGGCTA
TAGTCGGAGATAGCTGTTTCTTCTTTTAAGGTAGGAAGGATAGTGTATTT
ATTTTCATGGGCTGTAGTAGTAACAATAGGACCTTAGTATCAGACAAACA
TGGACATTCGCACTGACTGGACACCTCTCTCTGCTCTAACCCTTCCTACC
CTGAATATCACTTGAAAGAAAACCCGAACGTGCACAAAATCTGGTACAAA
TTCATACATCATTACCCACGTGTACTCTCCGGGGGAAGGCTAACGAACCG
CCTGCGATGGCTTTTCCTCCCAGCGATTATGATGTCATCGTCGTTGTCTA
TGGAGAAGTGGAGATTCGTGTTGTGAGACCGATGAACACATTGAGGACGA
AGTTCCGGTTGGCAGATGGACCCAATTCTGGGTATTTTCTGGTGTAGTTT
CATAATTCGACCGGGAATCAGACCGACGTTTGTCGTGTTCCACAAGATCG
AGTTCCTCAACCCTGGACGAAAAATGCAGTGTGCCTATCCACTTGGTTAT
TACAGTTTTCTCCTAGCACAGTGGATGCTAAAACGGGTTACAGAAAGGAC
ATCATATCATCATTACTACGATGGAACCCATCAAGCTTCAACTATGCGCC
TCGAGCTCTAAATAAATACAGACATGTGCCTATCAAGCACTCCCCCCCCC
CCCCGCTCCCTCATTGTCTTTCAAATGTGCTGATGAATACACATGTATGC
ACGTCGTGAATCTGGGTCACATGGTCTGACCATCATAGGCCGGTATGTGA
CAAAACCATGAGCCTTGATGACCTTTTTTCTGGGGTTCCTGTGTGGGCAT
GCGTGTACCTCTGCGCCCGTGTTCATAGCTAAGCCATGCTATGTTTGTGT
ACGCCATCCATCGCCGTTATTTAATTTTTGCAGATGAGTGCATTAACTAG
CCAACGTGATAGACTTGATCACCTCAGTATCGACACGTGCTGGAAGGATT
GGAGCTATTGATTCAGTCAAACTCCAAGACAGAAAACGCCCCACCCCGCA
CGAACGCACCCACACACTTAAGGTTCATGGCCGAATTTTGTCGGTGCTTG
CTTCGTATTCGCGGAACGATGGGAGTTCCGTGCGACGCAGTGCCGAAGAG
TGCGCGGGAAAATTCCTGGATCTTTACGGAGTGGGAGATGTCGAGACGGC
GATG
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Coding sequence (CDS) from alignment at H-paniculata_contig6016:11331..12684+

>mRNA_H-paniculata_contig6016.13694.1 ID=mRNA_H-paniculata_contig6016.13694.1|Name=mRNA_H-paniculata_contig6016.13694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig6016:11331..12684+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTGAGAAAAATCGGGTTTGGGGGAACAGCGGAGGGGGGAGGCGGGA
GGCAGGCAAGGCGCATCTAGCTGTGGCGTATTGGAGCTTTGATTACCGCG
AGCATGCCATGGGGCATTTGACGAGGGGGGTGTTTTGCAGCCACAAGGAG
ATTGAGAAAAATCGGGTTTGGGGGAACAGCGGAGGGGGGAGGCGGGAGGC
AGGCAAGGCGCATCTAGCTGTGGCGTATTGGAGCTTTGATTACCGCGAGC
ATGCCATGGGGCATTTGACGAGGGGGGTGTTTTGCAGCCACAAGGTTCAT
GGCCGAATTTTGTCGGTGCTTGCTTCGTATTCGCGGAACGATGGGAGTTC
CGTGCGACGCAGTGCCGAAGAGTGCGCGGGAAAATTCCTGGATCTTTACG
GAGTGGGAGATGTCGAGACGGCGATGGTTCATGGCCGAATTTTGTCGGTG
CTTGCTTCGTATTCGCGGAACGATGGGAGTTCCGTGCGACGCAGTGCCGA
AGAGTGCGCGGGAAAATTCCTGGATCTTTACGGAGTGGGAGATGTCGAGA
CGGCGATG
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