mRNA_H-paniculata_contig60153.13693.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60153.13693.1
Unique NamemRNA_H-paniculata_contig60153.13693.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60153.13693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60153contigH-paniculata_contig60153:372..706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.5084364-UTR-H-paniculata_contig60153:371..3941622930669.5084364-UTR-H-paniculata_contig60153:371..394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60153 372..394 +
1691481398.686824-UTR-H-paniculata_contig60153:371..3941691481398.686824-UTR-H-paniculata_contig60153:371..394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60153 372..394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.532924-CDS-H-paniculata_contig60153:394..7061622930669.532924-CDS-H-paniculata_contig60153:394..706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60153 395..706 +
1691481398.698264-CDS-H-paniculata_contig60153:394..7061691481398.698264-CDS-H-paniculata_contig60153:394..706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60153 395..706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60153.13693.1prot_H-paniculata_contig60153.13693.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60153 395..706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60153.13693.1

>prot_H-paniculata_contig60153.13693.1 ID=prot_H-paniculata_contig60153.13693.1|Name=mRNA_H-paniculata_contig60153.13693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MTVRVRRDADKTYPGTKPRTLFYSARPLIGVPLYQNIVTQKAVTDGSSLF
HLLQTPSPLQQILTPRWPLRVAHPRLKPASRFKNPSPMLDTSLMSPCYPR
LLRT
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mRNA from alignment at H-paniculata_contig60153:372..706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60153.13693.1 ID=mRNA_H-paniculata_contig60153.13693.1|Name=mRNA_H-paniculata_contig60153.13693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=335bp|location=Sequence derived from alignment at H-paniculata_contig60153:372..706+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGGTGGGATCCTCCGTGGGAATGACTGTACGCGTAAGGCGCGATGCG
GATAAAACATACCCGGGCACAAAACCCCGCACCTTATTCTACTCAGCCAG
ACCTCTAATCGGCGTCCCCTTGTACCAGAACATCGTGACACAAAAAGCGG
TCACAGATGGTTCGTCCCTGTTCCACCTCCTGCAAACACCTAGCCCACTC
CAACAAATTCTGACACCTCGCTGGCCACTTCGAGTGGCCCACCCAAGGCT
CAAACCCGCTTCTCGATTCAAAAATCCCTCCCCCATGCTGGATACCAGCC
TCATGTCTCCTTGCTACCCCCGACTTCTCCGAACT
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Coding sequence (CDS) from alignment at H-paniculata_contig60153:372..706+

>mRNA_H-paniculata_contig60153.13693.1 ID=mRNA_H-paniculata_contig60153.13693.1|Name=mRNA_H-paniculata_contig60153.13693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig60153:372..706+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGTACGCGTAAGGCGCGATGCGGATAAAACATACCCGGGCACAAA
ACCCCGCACCTTATTCTACTCAGCCAGACCTCTAATCGGCGTCCCCTTGT
ACCAGAACATCGTGACACAAAAAGCGGTCACAGATGGTTCGTCCCTGTTC
CACCTCCTGCAAACACCTAGCCCACTCCAACAAATTCTGACACCTCGCTG
GCCACTTCGAGTGGCCCACCCAAGGCTCAAACCCGCTTCTCGATTCAAAA
ATCCCTCCCCCATGCTGGATACCAGCCTCATGTCTCCTTGCTACCCCCGA
CTTCTCCGAACTATGACTGTACGCGTAAGGCGCGATGCGGATAAAACATA
CCCGGGCACAAAACCCCGCACCTTATTCTACTCAGCCAGACCTCTAATCG
GCGTCCCCTTGTACCAGAACATCGTGACACAAAAAGCGGTCACAGATGGT
TCGTCCCTGTTCCACCTCCTGCAAACACCTAGCCCACTCCAACAAATTCT
GACACCTCGCTGGCCACTTCGAGTGGCCCACCCAAGGCTCAAACCCGCTT
CTCGATTCAAAAATCCCTCCCCCATGCTGGATACCAGCCTCATGTCTCCT
TGCTACCCCCGACTTCTCCGAACT
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