prot_H-paniculata_contig6014.13692.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6014.13692.1
Unique Nameprot_H-paniculata_contig6014.13692.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length92
Homology
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: K0QZP2_THAOC (ATP-dependent DNA helicase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZP2_THAOC)

HSP 1 Score: 59.3 bits (142), Expect = 3.210e-8
Identity = 28/85 (32.94%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    2 HRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYS 86
            H+ L +P+E +TR TA A  I+LTG ++ C +C+  K+ R  + K+T +R  +  ER+++D+  P +  S+  + +  +++DD+S
Sbjct: 1689 HKELGHPNEVVTRSTAAARGIQLTGTFKPCEDCAVGKSKRKKLRKETVERAKKPGERMFLDISSP-KTTSIGGSIHWALMLDDHS 1772          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A7I4A1E0_PHYPA (gag_pre-integrs domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A1E0_PHYPA)

HSP 1 Score: 57.0 bits (136), Expect = 1.950e-7
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            C +C   K HR    KK+D RT+R+++ LY+DLGGPM  PS   + Y  ++ + YSR
Sbjct:  302 CEQCLAGKQHRERFPKKSDTRTSRILQLLYVDLGGPMPTPSACRSRYCFLVTNVYSR 358          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6L2KJU0_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KJU0_TANCI)

HSP 1 Score: 55.1 bits (131), Expect = 9.680e-7
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRL 88
            C  C Q K HR     KTD  + + +  L++DL GPM++ S++   YV++++DDYSRL
Sbjct:  656 CFACEQGKIHRKHHKSKTDFASNKPLYLLHMDLCGPMRVESINGKRYVLVVVDDYSRL 713          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A2Z6M3E3_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6M3E3_TRISU)

HSP 1 Score: 54.7 bits (130), Expect = 1.340e-6
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            C EC Q+K HR +  K+   +T  ++E +Y D+ GP+Q+ S+  N Y +  IDD+SR
Sbjct:  450 CEECVQSKQHRNSFSKEVKSKTKAILEVVYSDVCGPIQVESIGGNKYFVTFIDDFSR 506          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: UPI000CD7F571 (uncharacterized protein LOC111903063 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD7F571)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-6
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            CV C+Q K H      K  K  ++V++ L++DL GP+ I S+++NSY +I+ DDYSR
Sbjct:   38 CVPCAQGKHHHKTHKSKLVKSISKVLQLLHLDLFGPINILSINNNSYCLIVNDDYSR 94          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A392N9F0_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N9F0_9FABA)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-6
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            C +C Q K HR +  K    RT  V+E +Y D+ GPMQ+ S   N Y +  +DDYSR
Sbjct:   88 CEDCVQAKQHRDSFSKNVLSRTKSVLEVIYSDVCGPMQVNSTGGNRYFVTFVDDYSR 144          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A392MC48_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MC48_9FABA)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-6
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            C +C Q K HR +  K+   RT  V+E +Y D+ GPMQ+ S   N Y +  +DD+SR
Sbjct:   21 CEDCVQAKQHRDSFSKEVQSRTNHVLEVVYSDVCGPMQVDSTCGNRYFVSFVDDHSR 77          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A2Z6MGP9_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MGP9_TRISU)

HSP 1 Score: 54.3 bits (129), Expect = 1.820e-6
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            C EC Q+K HR +  K+   +T  ++E +Y D+ GP+Q+ S+  N Y +  IDD+SR
Sbjct:  420 CEECVQSKQHRNSFSKEVKSKTKAILEVVYSDVCGPIQVESIRGNKYFVTFIDDFSR 476          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A2Z6MID4_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MID4_TRISU)

HSP 1 Score: 53.9 bits (128), Expect = 2.480e-6
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            C EC Q+K HR +  K    +T  ++E +Y D+ GP+Q+ S+  N Y +  IDD+SR
Sbjct:  352 CEECVQSKQHRNSFSKDAKSKTKAILEVVYSDVCGPIQVESIGGNKYFVTFIDDFSR 408          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A2Z6MI56_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MI56_TRISU)

HSP 1 Score: 53.9 bits (128), Expect = 2.500e-6
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 0
Query:   31 CVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSR 87
            C EC Q+K HR +  K+   +T  ++E +Y D+ GP+Q+ S+  N Y +  IDD+SR
Sbjct:  394 CEECVQSKQHRNSFSKEVKGKTKAILEVVYSDVCGPIQVESIGGNKYFVTFIDDFSR 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0QZP2_THAOC3.210e-832.94ATP-dependent DNA helicase (Fragment) n=1 Tax=Thal... [more]
A0A7I4A1E0_PHYPA1.950e-743.86gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6L2KJU0_TANCI9.680e-741.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z6M3E3_TRISU1.340e-640.35Integrase catalytic domain-containing protein n=1 ... [more]
UPI000CD7F5711.630e-643.86uncharacterized protein LOC111903063 n=1 Tax=Lactu... [more]
A0A392N9F0_9FABA1.630e-643.86Retrovirus-related pol polyprotein from transposon... [more]
A0A392MC48_9FABA1.730e-642.11Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A2Z6MGP9_TRISU1.820e-640.35Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2Z6MID4_TRISU2.480e-640.35Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2Z6MI56_TRISU2.500e-640.35Uncharacterized protein n=1 Tax=Trifolium subterra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6014contigH-paniculata_contig6014:11045..11320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6014.13692.1mRNA_H-paniculata_contig6014.13692.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6014 10670..11338 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6014.13692.1 ID=prot_H-paniculata_contig6014.13692.1|Name=mRNA_H-paniculata_contig6014.13692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDK
RTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*
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