mRNA_H-paniculata_contig6014.13692.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6014.13692.1
Unique NamemRNA_H-paniculata_contig6014.13692.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 5.640e-39
Identity = 87/234 (37.18%), Postives = 136/234 (58.12%), Query Frame = 1
Query:    1 TQDITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEF---ITPKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            T DI + H + A+  E + R TAK +  +L G+  AC  CS +KA R  ++++T +R+ + + R+++DLGG   I S+    Y MI+ DD++R   + F+K +SDA  AF  F+      I P  +++  VR++NGGE   G F     EL I  + TP  +PQYN +AER LGL+ E  +A  +Q  V  G      ++KLW EAM++AC+ +N +  S N + ++P E W+G
Sbjct:  251 TMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 482          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 6.720e-38
Identity = 84/234 (35.90%), Postives = 135/234 (57.69%), Query Frame = 1
Query:    1 TQDITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            T DI + H + A+  E + R TAK +  +L G+  AC  CS +KA R  ++++T +R+ + + R++ DLGG   I S+    Y +I+ DD++R   + F++ KSDA +AF  F+        P  +++  VR++NGG+   G F     EL I  + TP  +PQYN +AER LGL+ E  +A  +Q  V  G      ++KLW EAM++AC+ +N +  S N + ++P E W+G
Sbjct:   31 TMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI--VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 262          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.800e-37
Identity = 86/232 (37.07%), Postives = 132/232 (56.90%), Query Frame = 1
Query:    7 DITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            D+ + H + A+  E + R TAK + IELTG+  AC  CS +KA +  +  +T  R+ + + R+++DLGG   + S+    Y MI+ DD++R   + F+K KSDA +AF  F+        P  +++  VR++NGGE   G F     EL I  + TP  +PQYN +AER LGL+    +A  +Q  V  G      +++LW EAM++AC+ IN +  S N +  +P E WHG
Sbjct:  571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHG 800          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.620e-37
Identity = 86/234 (36.75%), Postives = 135/234 (57.69%), Query Frame = 1
Query:    1 TQDITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            T DI + H + A+  E + R TAK +  +L G+  AC  CS +KA R  ++ +T +R+ + + R+++DLGG   I S+    Y MI+ DD++R   + F++ KSDA +AF  F+        P  +++  VR++NGGE   G F     EL I  + TP  +PQYN +AER LGL+ E  +A  +Q  V  G      ++KLW EAM++AC+ +N +  S N + ++P E W+G
Sbjct:  184 TMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEI--VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYG 415          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.560e-36
Identity = 85/234 (36.32%), Postives = 134/234 (57.26%), Query Frame = 1
Query:    1 TQDITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            T DI + H + A+  E + R TAK +  +L G+  AC  CS +KA R  ++++T +R+ + + R+++DLGG     S+    Y MI+ DD++R   + F++ KSDA +AF  F+        P  +++  VR++NGGE   G F     EL I  + TP  +PQYN +AER LGL+ E  +A  +Q  V  G      ++KLW EAM++AC+ +N +  S N + + P E W+G
Sbjct:  129 TMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYG 360          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.940e-36
Identity = 84/234 (35.90%), Postives = 130/234 (55.56%), Query Frame = 1
Query:    1 TQDITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            T D+ + H + A+  + + R TAK +  EL GE   C  CS  KA +  + ++T  R+ + + R+++DLGG   + S+    Y MI+ DD++R   + F+K KSDA  AF  F+        P  +++  VR++NGGE   G F     EL I  + TP  +PQYN +AER LGL+ E  +A  +Q  V  G      ++KLW EAM++AC+ +N +  S N +  +P E W+G
Sbjct:  663 TMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG 894          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 8.020e-36
Identity = 84/234 (35.90%), Postives = 130/234 (55.56%), Query Frame = 1
Query:    1 TQDITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            T D+ + H + A+  + + R TAK +  EL GE   C  CS  KA +  + ++T  R+ + + R+++DLGG   + S+    Y MI+ DD++R   + F+K KSDA  AF  F+        P  +++  VR++NGGE   G F     EL I  + TP  +PQYN +AER LGL+ E  +A  +Q  V  G      ++KLW EAM++AC+ +N +  S N +  +P E W+G
Sbjct:  370 TMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYG 601          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.230e-34
Identity = 83/232 (35.78%), Postives = 130/232 (56.03%), Query Frame = 1
Query:    7 DITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIAL-MQDLVESG------SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            D+ D H +  +  E + R TAK + IELTG+  AC  CS  KA R A+   T   + + + R++++LGG   + S+    Y MI+ DD++R   + F++ KSDA +AF  F+        P  I++  VR++NGGE   G F     EL I  + TP  +P++N +AER LGL+ E  +A  +Q  V  G      +++LW EAM++AC+ +N +  S N +  +P E W+G
Sbjct:  392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYG 621          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.640e-33
Identity = 81/228 (35.53%), Postives = 120/228 (52.63%), Query Frame = 1
Query:    7 DITDMHRLLAYPSEQITRDTAKAINIELTG-EWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFITPK-KIKVGAVRTNNGGECEGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIALMQDLVESG-----SEKLWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            D+   H    +  E++ + TAK   ++LTG     C+ CS +K     + K TD R    + RL+++LGG MQ  S+  N Y +II DD +R   + F+K KSDA AAF  ++ ++       +V   RT+ GGE +G F       GI  + TPP+TP+YN +AER LGLL +  +A      E       S  LW EA++ AC  +N + T+ N    +P E +HG
Sbjct:  134 DLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHG 361          
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.150e-31
Identity = 79/230 (34.35%), Postives = 122/230 (53.04%), Query Frame = 1
Query:    7 DITDMHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDKRTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*FMKKKSDATAAFMCFIDEFIT---PKKIKVGAVRTNNGGEC-EGSFDL*LYELGIMHQHTPPDTPQYNVLAERWLGLLREKTIA--LMQDLVESGSEK---LWTEAMNYACDVINMSVTSTNDNVITPNEEWHG 669
            DI D H    +  E + R TAK     L GE R C+ CS  K     +  KT  R  + ++R+++DL G  ++ SL    Y +I+ DDY+R   + F+K KSDA  AF  ++ E      P  + V  VR++NGGE  EG F     +  I  + TP  +P+YN +AER LGL+++  +A  +    +  G+     LW EA+ ++C+ +N + T++N    +P E WHG
Sbjct:  509 DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHG 736          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6014.13692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV76_9PHAE5.640e-3937.18Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVR5_9PHAE6.720e-3835.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE1.800e-3737.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE3.620e-3736.75Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3Y0_9PHAE1.560e-3636.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE7.940e-3635.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE8.020e-3635.90Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE3.230e-3435.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE3.640e-3335.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.150e-3134.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6014contigH-paniculata_contig6014:10670..11338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.9e-07
Seed eggNOG ortholog159749.K0QZP2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PIF1-like helicase
EggNOG OGs2XG4E@2836,COG0507@1,COG2801@1,KOG0017@2759,KOG0987@2759
COG Functional cat.L
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size669
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6014.13692.1prot_H-paniculata_contig6014.13692.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6014 11045..11320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.413622-UTR-H-paniculata_contig6014:10669..110441622930669.413622-UTR-H-paniculata_contig6014:10669..11044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6014 10670..11044 -
1691481398.6601942-UTR-H-paniculata_contig6014:10669..110441691481398.6601942-UTR-H-paniculata_contig6014:10669..11044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6014 10670..11044 -
1622930669.4458578-UTR-H-paniculata_contig6014:11320..113381622930669.4458578-UTR-H-paniculata_contig6014:11320..11338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6014 11321..11338 -
1691481398.6783144-UTR-H-paniculata_contig6014:11320..113381691481398.6783144-UTR-H-paniculata_contig6014:11320..11338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6014 11321..11338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.431077-CDS-H-paniculata_contig6014:11044..113201622930669.431077-CDS-H-paniculata_contig6014:11044..11320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6014 11045..11320 -
1691481398.670382-CDS-H-paniculata_contig6014:11044..113201691481398.670382-CDS-H-paniculata_contig6014:11044..11320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6014 11045..11320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6014.13692.1

>prot_H-paniculata_contig6014.13692.1 ID=prot_H-paniculata_contig6014.13692.1|Name=mRNA_H-paniculata_contig6014.13692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MHRLLAYPSEQITRDTAKAINIELTGEWRACVECSQTKAHRFAVLKKTDK
RTTRVVERLYIDLGGPMQIPSLSDNSYVMIIIDDYSRLQAL*
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mRNA from alignment at H-paniculata_contig6014:10670..11338-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6014.13692.1 ID=mRNA_H-paniculata_contig6014.13692.1|Name=mRNA_H-paniculata_contig6014.13692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=669bp|location=Sequence derived from alignment at H-paniculata_contig6014:10670..11338- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCAGGATATCACGGACATGCACCGGCTCCTTGCGTACCCGAGCGAGCA GATCACAAGAGATACTGCAAAAGCGATAAACATTGAGCTGACGGGGGAAT GGAGAGCCTGCGTGGAGTGTTCTCAAACAAAAGCTCATCGCTTCGCCGTG CTGAAAAAGACCGACAAGCGAACAACGCGGGTGGTGGAACGCCTTTACAT CGACTTGGGCGGACCCATGCAAATACCCAGCCTCAGCGACAACTCGTACG TCATGATCATCATCGATGACTACTCGCGCTTACAGGCCCTGTAGTTTATG AAGAAAAAGAGTGACGCCACTGCAGCATTCATGTGCTTCATCGACGAGTT CATCACGCCGAAGAAAATCAAGGTCGGCGCCGTTCGCACGAACAACGGCG GGGAGTGCGAAGGAAGCTTCGACCTATAGCTGTACGAGCTTGGCATCATG CACCAACACACGCCGCCGGACACGCCTCAGTATAATGTCCTTGCTGAAAG GTGGCTTGGCCTGCTCCGCGAGAAGACGATCGCGTTGATGCAAGACCTGG TGGAGAGCGGCAGCGAAAAATTATGGACAGAGGCGATGAACTACGCCTGC GACGTCATCAATATGAGCGTCACCTCGACTAACGACAACGTCATCACACC GAACGAGGAGTGGCACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6014:10670..11338-

>mRNA_H-paniculata_contig6014.13692.1 ID=mRNA_H-paniculata_contig6014.13692.1|Name=mRNA_H-paniculata_contig6014.13692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig6014:10670..11338- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCGGCTCCTTGCGTACCCGAGCGAGCAGATCACAAGAGATACTGC
AAAAGCGATAAACATTGAGCTGACGGGGGAATGGAGAGCCTGCGTGGAGT
GTTCTCAAACAAAAGCTCATCGCTTCGCCGTGCTGAAAAAGACCGACAAG
CGAACAACGCGGGTGGTGGAACGCCTTTACATCGACTTGGGCGGACCCAT
GCAAATACCCAGCCTCAGCGACAACTCGTACGTCATGATCATCATCGATG
ACTACTCGCGCTTACAGGCCCTGTAGATGCACCGGCTCCTTGCGTACCCG
AGCGAGCAGATCACAAGAGATACTGCAAAAGCGATAAACATTGAGCTGAC
GGGGGAATGGAGAGCCTGCGTGGAGTGTTCTCAAACAAAAGCTCATCGCT
TCGCCGTGCTGAAAAAGACCGACAAGCGAACAACGCGGGTGGTGGAACGC
CTTTACATCGACTTGGGCGGACCCATGCAAATACCCAGCCTCAGCGACAA
CTCGTACGTCATGATCATCATCGATGACTACTCGCGCTTACAGGCCCTGT
AG
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