mRNA_H-paniculata_contig6013.13690.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6013.13690.1
Unique NamemRNA_H-paniculata_contig6013.13690.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.860e-35
Identity = 65/139 (46.76%), Postives = 92/139 (66.19%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W+ +M +E EGL+ AG F    +VP GCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S+R++  +            + QAFVQ +LD E++++LP GCGSMS KVV LN+S+YGLK+
Sbjct:  730 WEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQ 868
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.180e-34
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W K+M +E EGL+ AG F    ++PEGCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S R++  +            + QAFVQ  LD E++++LP GC SMS K+V LN+S+YGLK+
Sbjct:  433 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQ 571
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.190e-34
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W K+M +E EGL+ AG F    ++PEGCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S R++  +            + QAFVQ  LD E++++LP GC SMS K+V LN+S+YGLK+
Sbjct:  497 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQ 635
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.190e-34
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W K+M +E EGL+ AG F    ++PEGCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S R++  +            + QAFVQ  LD E++++LP GC SMS K+V LN+S+YGLK+
Sbjct:  641 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQ 779
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.650e-34
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W K+M +E EGL+ AG F    ++PEGCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S R++  +            + QAFVQ  LD E++++LP GC SMS K+V LN+S+YG KR
Sbjct:  847 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGTKR 985
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.600e-34
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W+ +M +E EGL+ AG F    +VP  CNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S+R++  +            + QAFVQ +LD E++++LP GCGSMS KVV LN+S+YGLK+
Sbjct:  463 WEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQ 601
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.820e-34
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W  +M +EFEGLV AG F    +VP GCNV+D++W +KWK D  G I +A  R+V K + Q  G+DY   F+PTA+A S R+L  +            + QAFVQ  LD  ++++LP GCG+MS KVV LN+S+YGLK+
Sbjct:  182 WDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQ 320
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.400e-33
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W K+M +E EGL+ AG F    ++PEGCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S R++  +            + QAFVQ  LD E++++LP GC SMS K+V LN+S YGLK+
Sbjct:  161 WDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQ 299
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.460e-33
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W  +M +E EGL+ AG F    ++P GCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S R+L  +            + QAFVQ  LD E++++LP GCGSMS KVV LN+S+YGLK+
Sbjct:  795 WDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQ 933
[Close]
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.640e-33
Identity = 63/139 (45.32%), Postives = 88/139 (63.31%), Query Frame = 1 
Query:    1 WKKSMDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRMVGKEWSQLEGVDYHAIFTPTASATSNRVLAVI------------V*QAFVQFDLDTEIYLRLPSGCGSMSRKVVLLNRSIYGLKR 381
            W K+M +E EGL+ AG F    ++PEGCNV+D++W +KWK D  G I +A  R+V K + Q  GVDY   F+PTA+A S R++  +            + QAF Q  LD E+ ++LP GC SMS K+V LN+S+YGLK+
Sbjct:  228 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQ 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6013.13690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL9_9PHAE8.860e-3546.76Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5LDZ0_9PHAE1.180e-3446.04CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.190e-3446.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.190e-3446.04CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE1.650e-3446.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKK1_9PHAE5.600e-3446.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE5.820e-3446.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE1.400e-3346.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE1.460e-3346.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV80_9PHAE1.640e-3345.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6013contigH-paniculata_contig6013:36..452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog4558.Sb07g003556.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size381
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6013.13690.1prot_H-paniculata_contig6013.13690.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6013 153..440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.1916752-UTR-H-paniculata_contig6013:35..1521622930669.1916752-UTR-H-paniculata_contig6013:35..152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6013 36..152 -
1691481398.5974424-UTR-H-paniculata_contig6013:35..1521691481398.5974424-UTR-H-paniculata_contig6013:35..152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6013 36..152 -
1622930669.2496202-UTR-H-paniculata_contig6013:440..4521622930669.2496202-UTR-H-paniculata_contig6013:440..452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6013 441..452 -
1691481398.6238358-UTR-H-paniculata_contig6013:440..4521691481398.6238358-UTR-H-paniculata_contig6013:440..452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6013 441..452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930669.2117298-CDS-H-paniculata_contig6013:152..1541622930669.2117298-CDS-H-paniculata_contig6013:152..154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6013 153..154 -
1691481398.6073089-CDS-H-paniculata_contig6013:152..1541691481398.6073089-CDS-H-paniculata_contig6013:152..154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6013 153..154 -
1622930669.2302856-CDS-H-paniculata_contig6013:190..4401622930669.2302856-CDS-H-paniculata_contig6013:190..440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6013 191..440 -
1691481398.615412-CDS-H-paniculata_contig6013:190..4401691481398.615412-CDS-H-paniculata_contig6013:190..440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6013 191..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6013.13690.1

>prot_H-paniculata_contig6013.13690.1 ID=prot_H-paniculata_contig6013.13690.1|Name=mRNA_H-paniculata_contig6013.13690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MDSEFEGLVAAGNFCEVKEVPEGCNVVDSKWGYKWKCDPHGMIDRAALRM
VGKEWSQLEGVDYHAIFTPTASATSNRVLAVIV*
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mRNA from alignment at H-paniculata_contig6013:36..452-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6013.13690.1 ID=mRNA_H-paniculata_contig6013.13690.1|Name=mRNA_H-paniculata_contig6013.13690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig6013:36..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAAGAAGTCGATGGATTCAGAGTTTGAGGGGCTTGTAGCAGCAGGAAA
TTTTTGTGAAGTAAAAGAGGTACCAGAGGGATGCAATGTTGTGGATTCGA
AGTGGGGGTACAAGTGGAAGTGTGATCCACACGGCATGATTGATAGAGCA
GCATTAAGAATGGTGGGGAAGGAATGGAGCCAACTAGAAGGTGTCGACTA
CCATGCGATTTTCACTCCTACAGCGTCAGCAACGTCAAACAGAGTTTTGG
CGGTGATTGTGTGTTTGCTTGACTGAGATTTGGGACATTTTGGTGTAGAA
CAGGCATTCGTGCAATTTGACTTGGACACTGAGATTTACCTACGACTTCC
CTCTGGATGCGGTTCGATGTCTCGTAAGGTGGTGTTGCTGAACAGGTCCA
TTTACGGCCTGAAGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6013:36..452-

>mRNA_H-paniculata_contig6013.13690.1 ID=mRNA_H-paniculata_contig6013.13690.1|Name=mRNA_H-paniculata_contig6013.13690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig6013:36..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTCAGAGTTTGAGGGGCTTGTAGCAGCAGGAAATTTTTGTGAAGT
AAAAGAGGTACCAGAGGGATGCAATGTTGTGGATTCGAAGTGGGGGTACA
AGTGGAAGTGTGATCCACACGGCATGATTGATAGAGCAGCATTAAGAATG
GTGGGGAAGGAATGGAGCCAACTAGAAGGTGTCGACTACCATGCGATTTT
CACTCCTACAGCGTCAGCAACGTCAAACAGAGTTTTGGCGGTGATTGTGT
ATGGATTCAGAGTTTGAGGGGCTTGTAGCAGCAGGAAATTTTTGTGAAGT
AAAAGAGGTACCAGAGGGATGCAATGTTGTGGATTCGAAGTGGGGGTACA
AGTGGAAGTGTGATCCACACGGCATGATTGATAGAGCAGCATTAAGAATG
GTGGGGAAGGAATGGAGCCAACTAGAAGGTGTCGACTACCATGCGATTTT
CACTCCTACAGCGTCAGCAACGTCAAACAGAGTTTTGGCGGTGATTGTGT
AAAA
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