mRNA_H-paniculata_contig60111.13688.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 231 bits (590), Expect = 1.120e-67 Identity = 119/286 (41.61%), Postives = 177/286 (61.89%), Query Frame = 1
Query: 1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLV-LAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
+C+G T R +AA VR+++PKLEE+ Q+GVAV+GG E + + A+ HQ GHW++ DC+NAFN+ KR A + + P L ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD++ L + + EN++ I LV EL +G+ +N K+ A+PP H P ER + A G+ +A G VVG PIGTDA+VE + ++ E GA L R+L MPDKQ A L+ ++ + ++ER
Sbjct: 81 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 363
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 233 bits (593), Expect = 2.460e-67 Identity = 120/285 (42.11%), Postives = 177/285 (62.11%), Query Frame = 1
Query: 1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
+C+G T R +AA VR+++PKLEE+ Q+GVAV+GG E + + A+ HQ GHW++ DC+NAFN+ KR A + + P L ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD+ L +++ EN++ LV EL +G+ +N K+ A+PP H PTER A G+ +A G VVG PIGTDA+VE + ++ E GA+ L RLL MPDKQ A L+ ++ + ++ER
Sbjct: 449 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIER 730
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 234 bits (596), Expect = 3.750e-66 Identity = 113/283 (39.93%), Postives = 186/283 (65.72%), Query Frame = 1
Query: 1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNHIPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
+C+G T R +AA VRQ++PKLEE+ Q+GVAV+GG E + + A+ HQ G+W+I DC+NAFN+ KR A + + P L ++A+CY+E PA ++++D+GERR + ++G+ QGDG+GP LF + + PI+ K +++ + GV Y+DD+ L +++L EE+++++ LV ELA +G+ +N AK+ A+PP H+ T+++ +G++VA G G VVG PIGTD +V + + ++ E GA+ L R+L M D+Q A LI + + + ++ER
Sbjct: 620 VCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVA-GEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIER 901
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 232 bits (591), Expect = 1.370e-65 Identity = 119/285 (41.75%), Postives = 176/285 (61.75%), Query Frame = 1
Query: 1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
+C+G T R +AA VR+++PKLEE+ Q+GVAV+GG E + + A+ HQ GHW++ DC+NAFN+ KR A + + P L ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD+ L + + EN++ I LV EL +G+ +N K+ A+PP H P ER + A G+ +A G VVG PIGTDA+VE + ++ E GA L R+L MPDKQ A L+ ++ + ++ER
Sbjct: 450 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 731
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 227 bits (578), Expect = 1.250e-64 Identity = 119/285 (41.75%), Postives = 176/285 (61.75%), Query Frame = 1
Query: 1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAV-PPMNHI-PTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
+C+G T R +AA VR+++PKLEE+ Q+GVAV+GG E + + A+ HQ GHW++ DC+NAFN+ KR A + + P L ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD+ L + + EN++ I LV EL +G+ +N K+ A+ PP + P ER + A G+ +A G VVG PIGTDA+VE + ++ E GA L R+L MPDKQ A L+ ++ + +LER
Sbjct: 471 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLER 752
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 220 bits (560), Expect = 5.010e-63 Identity = 116/279 (41.58%), Postives = 170/279 (60.93%), Query Frame = 1
Query: 22 WRTL-AARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLER 849
WR L AA VR+++PKLEE+ Q+G AV GG E + + A+ HQ GHW++ DC+NAFN+ KR A + + P L ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD+ L + + EN++ I +V EL +G+ +N K+ A+PP H P ER + A G+ +A G VVG PIGTDA+VE + ++ E GA L R+L MPDKQ A L+ ++ + ++ER
Sbjct: 3 WRRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIER 278
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.190e-56 Identity = 101/240 (42.08%), Postives = 148/240 (61.67%), Query Frame = 1
Query: 1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVE 714
+C+G T R +AA VR+++PKLEE+ Q+GVAV+GG E + + A+ HQ GHW++ DC++AFN+ KR + + P + ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + GV L Y+DD+ L + EN++ I LV EL +G+ +N K+ A+PP H P ER + A G+ +A G VVG PIGTDA+VE
Sbjct: 74 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVE 310
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE) HSP 1 Score: 172 bits (436), Expect = 3.840e-48 Identity = 82/201 (40.80%), Postives = 124/201 (61.69%), Query Frame = 1
Query: 1 ICVGSTMWRTLAARVVRQYRPKLEEVNLSGRQYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH 603
+C+G T R +AA VR+++PKLEE+ Q+GVAV+GG E + + A+ Q GHW++ DC+N N+ KR A + + P L +A+CYE PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD+ L + + E+++ I LV EL +G+ +N K+ A+PP H
Sbjct: 127 VCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCYE-LPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 326
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.370e-47 Identity = 96/239 (40.17%), Postives = 141/239 (59.00%), Query Frame = 1
Query: 157 QLGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATKCRVLKICFLERVMGAEL 867
Q GHW++ DC+NAFN+ KR A + + P L ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD+ L + + E ++ I LV EL +G+ +N K+ A+PP H P ER + A G+ +A G VVG PI TDA+VE + ++ E GA L R+L MPDKQ A L+ ++ + +ER + EL
Sbjct: 528 QTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIETDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGCIERGINHEL 763
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE) HSP 1 Score: 179 bits (455), Expect = 1.770e-47 Identity = 92/221 (41.63%), Postives = 135/221 (61.09%), Query Frame = 1
Query: 160 LGHWLIALDCTNAFNSVKRAATVEEVEIRTPGLTPFVAKCYEEKPADIIFQLDTGERRKIS*STGIHQGDGLGPALFCMPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELARIGVYINNAKTKAVPPMNH--IPTEREIAAQAVMGISVANGGGAVVVGTPIGTDAFVEQHTVTIVKEKGAKYLERLLAPMPDKQAAMLIATK 816
LG W++ DC+NAFN+ KR A + + P L ++A+CY+E PA I+ +D+GERR I +G+ QGDG+GP LFC + PI+ K R + + GV L Y+DD+ L + + EN++ I LV EL +G+ +N K+ A+PP H P ER + A G+ +A G VVG PIGTDA+VE + ++ E GA L R++ MPDKQ A L+ ++
Sbjct: 142 LGQWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDA--GLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMVVRMPDKQVAHLVTSQ 359 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60111.13688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60111.13688.1 >prot_H-paniculata_contig60111.13688.1 ID=prot_H-paniculata_contig60111.13688.1|Name=mRNA_H-paniculata_contig60111.13688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp MPVGPILRKCREQLEAPGVELLVYLDDLVLAMRELMEENLRSIHFLVQELback to top mRNA from alignment at H-paniculata_contig60111:90..956- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60111.13688.1 ID=mRNA_H-paniculata_contig60111.13688.1|Name=mRNA_H-paniculata_contig60111.13688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at H-paniculata_contig60111:90..956- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60111:90..956- >mRNA_H-paniculata_contig60111.13688.1 ID=mRNA_H-paniculata_contig60111.13688.1|Name=mRNA_H-paniculata_contig60111.13688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig60111:90..956- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |