mRNA_H-paniculata_contig6010.13685.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6010.13685.1
Unique NamemRNA_H-paniculata_contig6010.13685.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6010.13685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6010contigH-paniculata_contig6010:967..1402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size405
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.8345315-UTR-H-paniculata_contig6010:966..9971622930668.8345315-UTR-H-paniculata_contig6010:966..997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6010 967..997 +
1691481398.4065428-UTR-H-paniculata_contig6010:966..9971691481398.4065428-UTR-H-paniculata_contig6010:966..997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6010 967..997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.8505487-CDS-H-paniculata_contig6010:997..14021622930668.8505487-CDS-H-paniculata_contig6010:997..1402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6010 998..1402 +
1691481398.4175603-CDS-H-paniculata_contig6010:997..14021691481398.4175603-CDS-H-paniculata_contig6010:997..1402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6010 998..1402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6010.13685.1prot_H-paniculata_contig6010.13685.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6010 998..1402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6010.13685.1

>prot_H-paniculata_contig6010.13685.1 ID=prot_H-paniculata_contig6010.13685.1|Name=mRNA_H-paniculata_contig6010.13685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MHFFCPYQTDTSVPCTQKSLHSRSVHIRKTKPLTSTPLRHWFENNPHSSL
YANHCTQERPSQIPRRAYFNRRASIPQASCSSSSSGTGLPWLFSAARPPL
DSQAGIVCTHDMCCDYRLTSQHKRKTLINTVSQL*
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mRNA from alignment at H-paniculata_contig6010:967..1402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6010.13685.1 ID=mRNA_H-paniculata_contig6010.13685.1|Name=mRNA_H-paniculata_contig6010.13685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=436bp|location=Sequence derived from alignment at H-paniculata_contig6010:967..1402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACAGACCGACAAATTACAGCATAAGCTCAATGCACTTTTTTTGCCCCT
ATCAAACAGATACGTCTGTCCCCTGTACTCAAAAGTCGTTGCACTCGAGA
TCAGTTCATATTCGAAAAACCAAACCTCTCACCAGCACTCCTCTTAGACA
CTGGTTTGAAAACAATCCGCACTCCAGTCTGTATGCCAATCATTGCACAC
AGGAACGACCTTCCCAAATACCTCGCAGGGCATACTTCAACAGACGCGCC
TCAATCCCTCAAGCCAGTTGCTCTTCGAGTTCCAGCGGAACGGGACTGCC
CTGGCTTTTTTCTGCCGCAAGACCTCCATTGGACTCACAGGCAGGTATAG
TTTGCACACATGATATGTGTTGTGATTATCGTTTAACGTCACAGCACAAG
AGAAAAACCCTTATAAACACGGTTTCTCAACTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6010:967..1402+

>mRNA_H-paniculata_contig6010.13685.1 ID=mRNA_H-paniculata_contig6010.13685.1|Name=mRNA_H-paniculata_contig6010.13685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig6010:967..1402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTTTTTTTGCCCCTATCAAACAGATACGTCTGTCCCCTGTACTCA
AAAGTCGTTGCACTCGAGATCAGTTCATATTCGAAAAACCAAACCTCTCA
CCAGCACTCCTCTTAGACACTGGTTTGAAAACAATCCGCACTCCAGTCTG
TATGCCAATCATTGCACACAGGAACGACCTTCCCAAATACCTCGCAGGGC
ATACTTCAACAGACGCGCCTCAATCCCTCAAGCCAGTTGCTCTTCGAGTT
CCAGCGGAACGGGACTGCCCTGGCTTTTTTCTGCCGCAAGACCTCCATTG
GACTCACAGGCAGGTATAGTTTGCACACATGATATGTGTTGTGATTATCG
TTTAACGTCACAGCACAAGAGAAAAACCCTTATAAACACGGTTTCTCAAC
TGTAAATGCACTTTTTTTGCCCCTATCAAACAGATACGTCTGTCCCCTGT
ACTCAAAAGTCGTTGCACTCGAGATCAGTTCATATTCGAAAAACCAAACC
TCTCACCAGCACTCCTCTTAGACACTGGTTTGAAAACAATCCGCACTCCA
GTCTGTATGCCAATCATTGCACACAGGAACGACCTTCCCAAATACCTCGC
AGGGCATACTTCAACAGACGCGCCTCAATCCCTCAAGCCAGTTGCTCTTC
GAGTTCCAGCGGAACGGGACTGCCCTGGCTTTTTTCTGCCGCAAGACCTC
CATTGGACTCACAGGCAGGTATAGTTTGCACACATGATATGTGTTGTGAT
TATCGTTTAACGTCACAGCACAAGAGAAAAACCCTTATAAACACGGTTTC
TCAACTGTAA
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