mRNA_H-paniculata_contig6010.13686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6010.13686.1
Unique NamemRNA_H-paniculata_contig6010.13686.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6010.13686.1 vs. uniprot
Match: D8LQD7_ECTSI (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.570e-6
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  181 SAATTAARSVPRWITRKYVVHNLRMGGSRVIKEIQVVCSRRNNGDDMPVPAEETSQEG 354
            SAA T A     WITR YVV +LRMGGSR I+E+ +VC+RRN      +P   T +EG
Sbjct:  778 SAAATGASPSSTWITRTYVVRDLRMGGSRAIREVSLVCARRNK-----LPTLSTQEEG 830
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BLAST of mRNA_H-paniculata_contig6010.13686.1 vs. uniprot
Match: A0A6H5LAJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAJ7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.810e-6
Identity = 38/96 (39.58%), Postives = 46/96 (47.92%), Query Frame = 1 
Query:  181 SAATTAARSVPRWITRKYVVHNLRMGGSRVIKEIQVVCSRRNNGDDMPVPAEETSQEGLR----LLPGRRRNADGEDRCTQRQGAGVEVAEGKRVA 456
            SAA T       WITR YVV +LRMGGSR I+E+ +VC+RR     +    E   +   R     LPG RR  D         G GV  A G+  A
Sbjct:  226 SAAATGTSLSSTWITRTYVVRDLRMGGSRAIREVSLVCARRRKSPTLSTQGEGGEKVAARSAWSALPGGRRLED--------SGGGVSNAGGRSGA 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6010.13686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQD7_ECTSI1.570e-651.72Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A6H5LAJ7_9PHAE4.810e-639.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6010contigH-paniculata_contig6010:3381..4350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size469
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.7658417-CDS-H-paniculata_contig6010:3382..38211622930668.7658417-CDS-H-paniculata_contig6010:3382..3821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6010 3383..3821 -
1691481398.3822863-CDS-H-paniculata_contig6010:3382..38211691481398.3822863-CDS-H-paniculata_contig6010:3382..3821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6010 3383..3821 -
1622930668.782444-CDS-H-paniculata_contig6010:4324..43501622930668.782444-CDS-H-paniculata_contig6010:4324..4350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6010 4325..4350 -
1691481398.3955681-CDS-H-paniculata_contig6010:4324..43501691481398.3955681-CDS-H-paniculata_contig6010:4324..4350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6010 4325..4350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6010.13686.1prot_H-paniculata_contig6010.13686.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6010 3383..4350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6010.13686.1

>prot_H-paniculata_contig6010.13686.1 ID=prot_H-paniculata_contig6010.13686.1|Name=mRNA_H-paniculata_contig6010.13686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
KNNLQARVSCNSQATPLQSDTTERSHLRGGGRGDSSDLEARASHDNKKTP
PPEQTSVGTPSAATTAARSVPRWITRKYVVHNLRMGGSRVIKEIQVVCSR
RNNGDDMPVPAEETSQEGLRLLPGRRRNADGEDRCTQRQGAGVEVAEGKR
VATGG
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mRNA from alignment at H-paniculata_contig6010:3381..4350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6010.13686.1 ID=mRNA_H-paniculata_contig6010.13686.1|Name=mRNA_H-paniculata_contig6010.13686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=970bp|location=Sequence derived from alignment at H-paniculata_contig6010:3381..4350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATAATCTCCAAGCTAGGGTCAGGTACATACATACGTAACTGGTGTT
CCAAATATATATATGTTTTGCTCAGCACACCGAGCCCGATCACGCTCAGA
CCCAGGGGTTAAATGGCAGATGGACGTGCTCTTAAAAACAAGGGCGGCGC
ACACATTACATGGCGCGATATGATATGACATGGCATGCTAGAATGCTGTG
GGGACTGTCGTCGATACAACACAAGCGTTTTTGTCGAACCGTTTTGTCCG
ATCTTCAGAAGACCTTCGGCCGGCAACGCGGATAATCCAAATGATGTGGT
CGTCGATAAAAGCGTGAAGGGAGATCAATAGAGATTGTCACAACGATAGT
AGGGTTGTAATAATTTCTTGACCCAACGTATATGTCGGTAAGATTTTTGC
AATACCTTCAGCTCTATTTTCCATCTCTACAGCAACTCTGTAAGAGTTGC
CTACGCTAGTTTGCTTCATGGCATTGCGCGAGGAGCGCGGGGACCCAATC
GCCACAACCCCTCTTGAATACCCCCCCAGCTGCAACTCACAAGCTACACC
ATTACAATCGGATACGACGGAGAGATCGCACTTGCGCGGGGGCGGCAGGG
GCGACAGTAGCGATCTGGAGGCGCGTGCATCACATGACAACAAAAAAACG
CCCCCTCCCGAGCAAACCTCCGTGGGAACACCGTCCGCCGCCACCACTGC
TGCTAGAAGTGTTCCCAGGTGGATCACGAGAAAGTACGTCGTTCATAACT
TGCGCATGGGAGGCTCGCGGGTAATCAAAGAGATACAAGTTGTCTGCTCT
CGACGGAACAACGGTGATGATATGCCTGTGCCCGCCGAAGAAACCTCGCA
AGAGGGGCTTCGATTATTGCCGGGACGGCGGCGAAATGCAGATGGTGAAG
ATAGATGCACCCAGCGTCAAGGTGCAGGGGTGGAGGTGGCGGAAGGAAAG
AGAGTGGCGACGGGCGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6010:3381..4350-

>mRNA_H-paniculata_contig6010.13686.1 ID=mRNA_H-paniculata_contig6010.13686.1|Name=mRNA_H-paniculata_contig6010.13686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig6010:3381..4350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATAATCTCCAAGCTAGGGTCAGAAAAATAATCTCCAAGCTAGGGTC
AGCTGCAACTCACAAGCTACACCATTACAATCGGATACGACGGAGAGATC
GCACTTGCGCGGGGGCGGCAGGGGCGACAGTAGCGATCTGGAGGCGCGTG
CATCACATGACAACAAAAAAACGCCCCCTCCCGAGCAAACCTCCGTGGGA
ACACCGTCCGCCGCCACCACTGCTGCTAGAAGTGTTCCCAGGTGGATCAC
GAGAAAGTACGTCGTTCATAACTTGCGCATGGGAGGCTCGCGGGTAATCA
AAGAGATACAAGTTGTCTGCTCTCGACGGAACAACGGTGATGATATGCCT
GTGCCCGCCGAAGAAACCTCGCAAGAGGGGCTTCGATTATTGCCGGGACG
GCGGCGAAATGCAGATGGTGAAGATAGATGCACCCAGCGTCAAGGTGCAG
GGGTGGAGGTGGCGGAAGGAAAGAGAGTGGCGACGGGCGGGCTGCAACTC
ACAAGCTACACCATTACAATCGGATACGACGGAGAGATCGCACTTGCGCG
GGGGCGGCAGGGGCGACAGTAGCGATCTGGAGGCGCGTGCATCACATGAC
AACAAAAAAACGCCCCCTCCCGAGCAAACCTCCGTGGGAACACCGTCCGC
CGCCACCACTGCTGCTAGAAGTGTTCCCAGGTGGATCACGAGAAAGTACG
TCGTTCATAACTTGCGCATGGGAGGCTCGCGGGTAATCAAAGAGATACAA
GTTGTCTGCTCTCGACGGAACAACGGTGATGATATGCCTGTGCCCGCCGA
AGAAACCTCGCAAGAGGGGCTTCGATTATTGCCGGGACGGCGGCGAAATG
CAGATGGTGAAGATAGATGCACCCAGCGTCAAGGTGCAGGGGTGGAGGTG
GCGGAAGGAAAGAGAGTGGCGACGGGCGGG
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