mRNA_H-paniculata_contig6009.13683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6009.13683.1
Unique NamemRNA_H-paniculata_contig6009.13683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: D7FJM8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM8_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 4.140e-153
Identity = 235/254 (92.52%), Postives = 249/254 (98.03%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDR 762
            RDVCASATTGSGKTAAF+LPILERLLYRPKKVAVTRVM++TPTRELGVQIHSMC SL+Q+TDI+ ALVVGGNKN+KAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCP GRQTLLFSATMNTKVDDLASLALNKPVRV+ASP+NSAPQRLVQEFVRIRQSRE+DREAILLSLL RTF TKTIVFFDTK+LAHRLNI+LG+AGIR+AELHGNLAMTQRLEALDR
Sbjct:  345 RDVCASATTGSGKTAAFLLPILERLLYRPKKVAVTRVMIITPTRELGVQIHSMCRSLSQFTDIACALVVGGNKNLKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPIGRQTLLFSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEFVRIRQSREQDREAILLSLLTRTFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLEALDR 598
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: A0A835YJC4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC4_9STRA)

HSP 1 Score: 392 bits (1006), Expect = 3.000e-127
Identity = 199/258 (77.13%), Postives = 224/258 (86.82%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDRQVVG 774
            RDVCASA TGSGKTAAF+LP+LERLLYRP+  A TRVMV+TPTREL VQIHSMC +LAQ+TDI   LVVGGNKN+KAQEAELR RPDIVICTPGRM+DH+ NSA VH+DD+EILVLDEADRLLE+GF+EEV  LV+ CP+GRQT+LFSATMNTKV  L  LALNKPVRV A+P NS   RLVQEFVR+RQSRE DREAILLSLL+RTFT KTIVF+DTK  AHR  ++LGLAG+++AELHGNL MTQRLEALDR   G
Sbjct:  323 RDVCASAQTGSGKTAAFVLPMLERLLYRPRSAAATRVMVITPTRELAVQIHSMCGALAQFTDIGCCLVVGGNKNIKAQEAELRNRPDIVICTPGRMIDHVVNSACVHLDDLEILVLDEADRLLEMGFEEEVHTLVEHCPRGRQTMLFSATMNTKVQGLIKLALNKPVRVVATPPNSVNTRLVQEFVRVRQSREMDREAILLSLLSRTFTEKTIVFYDTKAQAHRALLVLGLAGLKAAELHGNLTMTQRLEALDRFKAG 580
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: A0A7S2V390_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V390_9STRA)

HSP 1 Score: 332 bits (852), Expect = 1.670e-106
Identity = 170/256 (66.41%), Postives = 209/256 (81.64%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKG--RQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDR 762
            RDVCASA TGSGKTAAF+LP+LERLLYRP++V  TRV+VV PTREL  Q  +M + LAQ+TD++ ALVVGG+KN++AQEAELRARPD+V+CTPGRMVDHLTN+ SVH+D +EIL+LDE DRLLELGFQEE+ +LV++CP+G  RQTLLFSATM+  V+ LA+L+LNKPVRVR         RLVQEFVRIR SRE+DREAI+ SL+AR F+ K +VF D K   HRL ++LGL G++  ELHGNL   QRL++L R
Sbjct:   94 RDVCASAATGSGKTAAFLLPVLERLLYRPQRVRATRVLVVCPTRELAAQGSAMLHQLAQFTDVTLALVVGGSKNLRAQEAELRARPDVVVCTPGRMVDHLTNTPSVHLDTIEILILDEVDRLLELGFQEELEQLVQACPQGLGRQTLLFSATMSMGVERLATLSLNKPVRVRVDSSYVVAPRLVQEFVRIRPSREKDREAIVASLVARNFSEKCMVFVDYKSQCHRLRLVLGLLGMKVGELHGNLTQEQRLDSLQR 349
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: A0A7S1C375_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C375_9STRA)

HSP 1 Score: 329 bits (844), Expect = 3.830e-105
Identity = 169/253 (66.80%), Postives = 200/253 (79.05%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALD 759
            RDVC SA TGSGKTAAF+LP+LERLLYR K++A  R +V++PTREL  Q  SM   L +YTD+ S LVVGG  +VKAQEAELR RPD+VICTPGRM+DHL NS SVH+DDV+ILV+DEADRLLELGF EEV E+VK+CPKGRQTL+FSATM   VD LA ++L +PVRV A PL    QRLVQEF+R+R  RE+DREAI++SL+ R+F   TIVFF  K  AHR  I+LGLAG+   ELHGNL   QRLEAL+
Sbjct:  106 RDVCGSAETGSGKTAAFLLPVLERLLYRDKRIAAIRCVVMSPTRELASQTWSMLKELNKYTDVRSCLVVGG-LSVKAQEAELRTRPDVVICTPGRMIDHLRNSMSVHLDDVDILVMDEADRLLELGFTEEVEEVVKACPKGRQTLMFSATMTDDVDKLAKMSLKRPVRVSADPLYDLSQRLVQEFIRVRDDREDDREAIMVSLVTRSFKKGTIVFFQRKKRAHRAAILLGLAGVNVGELHGNLTQRQRLEALE 357
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: A0A7S3PR35_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR35_9STRA)

HSP 1 Score: 324 bits (831), Expect = 4.190e-103
Identity = 164/254 (64.57%), Postives = 202/254 (79.53%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDR 762
            RD+C SA TGSGKTAA++LP LERLL+RP+ V+V RV+++TPTREL  Q+ SMC  LAQ+TDI +  VVGG  N++AQ  +LR RPDIV+ TPGR++DH+ N+ SV +DDVEIL+LDEADRLLE+GF +EV E+VK CPK +QTLLFSATM T V+ LA L+LN+PVRV A PL     RLVQEFVRIR SRE DREAILL+L  RTF  +TI+FF  KV AHR+ II GL+G+++AELHGNL   QRLE+L R
Sbjct:  115 RDICGSAVTGSGKTAAYLLPTLERLLFRPRSVSVIRVLILTPTRELAQQVLSMCQKLAQFTDIEAMSVVGG-LNLQAQATQLRGRPDIVVATPGRLIDHVRNTQSVDLDDVEILILDEADRLLEMGFTDEVMEVVKFCPKSKQTLLFSATMTTSVNQLAELSLNRPVRVAADPLYDMANRLVQEFVRIRASRESDREAILLALCTRTFHKETIIFFRRKVRAHRMGIIFGLSGLKAAELHGNLTQRQRLESLQR 367
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: A0A7S2WP83_9STRA (Hypothetical protein (Fragment) n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WP83_9STRA)

HSP 1 Score: 327 bits (837), Expect = 1.710e-102
Identity = 168/254 (66.14%), Postives = 202/254 (79.53%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDR 762
            RD+C SA TGSGKTAAF+LP+LERLL+RPK++A TRV++VTPTREL  Q+ SM   LAQYTDI +A +VGG  ++  Q  ELR+RPDIV+ TPGR++DH+ N+ SV +DDVEIL+LDEADRLLELGF +EV ELVK CPK RQTLLFSATM T V+ LA L+LN+PVRV+A PL     RLVQEFVRIR SRE DREA+LL+L  R+F +K IVFF  K  AHR+ II GL G+++AELHGNL   QRLEAL R
Sbjct:  261 RDICGSAVTGSGKTAAFVLPVLERLLFRPKRIAATRVLIVTPTRELTQQVLSMLEKLAQYTDIKAAGIVGG-LSMSMQAMELRSRPDIVVATPGRLIDHVRNTQSVDLDDVEILILDEADRLLELGFMDEVMELVKFCPKSRQTLLFSATMTTSVNQLAELSLNRPVRVQADPLYDMAARLVQEFVRIRPSRERDREAMLLALCTRSFKSKVIVFFSRKHHAHRMGIIFGLCGLKAAELHGNLTQRQRLEALQR 513
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: M4BEJ4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BEJ4_HYAAE)

HSP 1 Score: 318 bits (815), Expect = 4.810e-102
Identity = 164/254 (64.57%), Postives = 198/254 (77.95%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDR 762
            +D+CASA TGSGKTAAF+LPILERL +R ++V  TRVM++ P REL  Q  SM   LA++TDI+ +L VGG   +K QEAELR RPD+V+CTPGRM+DHL NS SVHMDD+EILVLDEADRLLELGF +EV ELV+ CP  RQT+LFSATM +KVD L  L++ +PVR+   PL    + LVQEFVRIR +RE+DREAILL+L  RTF T TIVF +TK  AHR+ II GLAGI++AELHGNL    RLEAL +
Sbjct:   27 KDICASAQTGSGKTAAFLLPILERLQFRSRRVQSTRVMIICPVRELATQCQSMFEQLARFTDITISLAVGGLP-LKVQEAELRNRPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTDEVLELVRMCPVQRQTMLFSATMTSKVDQLIGLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCTRTFRTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLLQRDRLEALQK 279
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: D0N9A9_PHYIT (DEAD/DEAH box RNA helicase, putative n=9 Tax=Phytophthora TaxID=4783 RepID=D0N9A9_PHYIT)

HSP 1 Score: 321 bits (822), Expect = 1.510e-101
Identity = 165/254 (64.96%), Postives = 200/254 (78.74%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDR 762
            +D+CASA TGSGKTAAF+LPILERL +R ++V  TRVM++ P REL  Q  SM   LA++TDI+ +L VGG   +KAQEAELR RPD+V+CTPGRM+DHL NS SVHMDD+EILVLDEADRLLELGF EEV ELV+ CP  RQT+LFSATM +KVD L  L++ +PVR+   PL    + LVQEFVRIR +RE+DREAILL+L  RTF + TIVF +TK  AHR+ II GLAGI++AELHGNL   +RLEAL +
Sbjct:  169 KDICASAQTGSGKTAAFLLPILERLQFRSRRVQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLP-LKAQEAELRNRPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQK 421
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: A0A662YB28_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YB28_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.640e-101
Identity = 166/252 (65.87%), Postives = 200/252 (79.37%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEAL 756
            +D+CASA TGSGKTAAF+LPILERL +R ++V  TRVM++ P REL  Q  SM   LA++TDI+ +L VGG   +KAQEAELR RPD+V+CTPGRM+DHL NS S+HMDD+EILVLDEADRLLELGF EEV ELV+ CP  RQT+LFSAT+ +KVD L  L++ +PVR+   PL    + LVQEFVRIRQ+RE DREAILL+L  RTF T TIVF +TKV AHR+ II GLAGI++AELHGNL   +RLEAL
Sbjct:  289 KDICASAQTGSGKTAAFLLPILERLQFRSRRVQSTRVMIICPVRELATQCQSMFEQLARFTDITCSLAVGGLP-LKAQEAELRNRPDVVVCTPGRMIDHLRNSKSIHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVARQTMLFSATLTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRQNREGDREAILLALCTRTFRTNTIVFMETKVHAHRMMIIFGLAGIKAAELHGNLLQRERLEAL 539
[Close]
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Match: A0A3M6VKN0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKN0_9STRA)

HSP 1 Score: 322 bits (825), Expect = 4.260e-101
Identity = 166/254 (65.35%), Postives = 201/254 (79.13%), Query Frame = 1 
Query:    1 RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQIHSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSATMNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAILLSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLEALDR 762
            +D+CASA TGSGKTAAF+LPILERL +R ++V  TRVM++ P REL  Q  SM   LA++TDI+ +L VGG   +KAQEAELR RPD+V+CTPGRM+DHL NS SVHMDD+EILVLDEADRLLELGF EEV ELV+ CP  RQT+LFSATM +KVD L +L++ +PVR+   PL    + LVQEFVRIR +RE+DREAILL+L  RTF T TIVF +TK  AHR+ II GLAGI++AELHGNL   +RLEAL +
Sbjct:  266 KDICASAQTGSGKTAAFLLPILERLQFRSRRVQSTRVMIICPVRELATQCQSMFEQLARFTDITISLAVGGLP-LKAQEAELRNRPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTMLFSATMTSKVDQLINLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCTRTFRTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLMQRERLEALQK 518
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6009.13683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJM8_ECTSI4.140e-15392.52DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YJC4_9STRA3.000e-12777.13P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2V390_9STRA1.670e-10666.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1C375_9STRA3.830e-10566.80Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3PR35_9STRA4.190e-10364.57Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2WP83_9STRA1.710e-10266.14Hypothetical protein (Fragment) n=2 Tax=labyrinthu... [more]
M4BEJ4_HYAAE4.810e-10264.57Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
D0N9A9_PHYIT1.510e-10164.96DEAD/DEAH box RNA helicase, putative n=9 Tax=Phyto... [more]
A0A662YB28_9STRA1.640e-10165.87Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3M6VKN0_9STRA4.260e-10165.35Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6009contigH-paniculata_contig6009:3021..13021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score459.5
Seed ortholog evalue1e-126
Seed eggNOG ortholog2880.D7FJM8
Preferred nameDDX27
KEGG koko:K13181
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0070035,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0338@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041
Exons6
Model size777
Cds size777
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6009.13683.1prot_H-paniculata_contig6009.13683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6009 3021..13021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.3876812-CDS-H-paniculata_contig6009:3020..31801622930668.3876812-CDS-H-paniculata_contig6009:3020..3180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 3021..3180 -
1691481398.1452744-CDS-H-paniculata_contig6009:3020..31801691481398.1452744-CDS-H-paniculata_contig6009:3020..3180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 3021..3180 -
1622930668.40642-CDS-H-paniculata_contig6009:4016..41381622930668.40642-CDS-H-paniculata_contig6009:4016..4138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 4017..4138 -
1691481398.1627722-CDS-H-paniculata_contig6009:4016..41381691481398.1627722-CDS-H-paniculata_contig6009:4016..4138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 4017..4138 -
1622930668.4421287-CDS-H-paniculata_contig6009:4792..49331622930668.4421287-CDS-H-paniculata_contig6009:4792..4933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 4793..4933 -
1691481398.1793036-CDS-H-paniculata_contig6009:4792..49331691481398.1793036-CDS-H-paniculata_contig6009:4792..4933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 4793..4933 -
1622930668.4599872-CDS-H-paniculata_contig6009:5834..59541622930668.4599872-CDS-H-paniculata_contig6009:5834..5954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 5835..5954 -
1691481398.1919184-CDS-H-paniculata_contig6009:5834..59541691481398.1919184-CDS-H-paniculata_contig6009:5834..5954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 5835..5954 -
1622930668.4727635-CDS-H-paniculata_contig6009:8455..85581622930668.4727635-CDS-H-paniculata_contig6009:8455..8558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 8456..8558 -
1691481398.2038257-CDS-H-paniculata_contig6009:8455..85581691481398.2038257-CDS-H-paniculata_contig6009:8455..8558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 8456..8558 -
1622930668.4864051-CDS-H-paniculata_contig6009:12890..130211622930668.4864051-CDS-H-paniculata_contig6009:12890..13021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 12891..13021 -
1691481398.2208827-CDS-H-paniculata_contig6009:12890..130211691481398.2208827-CDS-H-paniculata_contig6009:12890..13021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6009 12891..13021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6009.13683.1

>prot_H-paniculata_contig6009.13683.1 ID=prot_H-paniculata_contig6009.13683.1|Name=mRNA_H-paniculata_contig6009.13683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
RDVCASATTGSGKTAAFMLPILERLLYRPKKVAVTRVMVVTPTRELGVQI
HSMCNSLAQYTDISSALVVGGNKNVKAQEAELRARPDIVICTPGRMVDHL
TNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPKGRQTLLFSAT
MNTKVDDLASLALNKPVRVRASPLNSAPQRLVQEFVRIRQSREEDREAIL
LSLLARTFTTKTIVFFDTKVLAHRLNIILGLAGIRSAELHGNLAMTQRLE
ALDRQVVG*
back to top

mRNA from alignment at H-paniculata_contig6009:3021..13021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6009.13683.1 ID=mRNA_H-paniculata_contig6009.13683.1|Name=mRNA_H-paniculata_contig6009.13683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10001bp|location=Sequence derived from alignment at H-paniculata_contig6009:3021..13021- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGATGTTTGTGCGAGCGCCACTACTGGAAGCGGAAAGACCGCAGCTTT
CATGTTGCCAATTCTTGAGCGTCTATTGTATCGGCCGAAGAAAGTGGCGG
TTACTCGGGTCATGGTCGTCACGCCCACGAGGTACGTTCGTGGGCTTTGA
TTGTGTATATGAAATCGAAGGACGCCGTCAGAGAGCGCCCTCGAACTAGG
TATTTTTAGAGGTCGATTGTTGCTAACGGCAACTTTGTATGACGACAAAG
TTCATGTGTTCGAGAGAGATGTGTATCTAATGACGGAGATATCTTGGGAT
AGTTCATCGGCACAACTCTCTTTCACTGTTGCGCGCCGTGCATACCTCGG
GTGAAGGAGGGGTAAAGGATCCGCAATGCCTTCTTCCCCGAACGAAATTT
CAAAATCAGCTACCTCGATCTTCATCACCCTACTTTGTTTCCCAATTAGC
TGCGTTCATAATCTTGACCGATATTCAACTTGTGCATTTTGTTATCGTCA
TCATCTTTCTCGGATCTGTACAGAAACATATACACCGACTTTCAAACGAT
CATGCACGAATCACCTTTGGTACTTACCTTACGTACACACCTTGATCGTA
GTTTGGGTCAAGATCGACGAAGGCATAGCACTGCCCCGTTCTAAGGCGTG
CACTTTTATGGCACCGTATTTTCTGGGGATACGGGGTCCAAAATGAAAAT
GCCCCCGTGGCGTGGTGACCGCACCCTGTGATATTCTACACAGATTGGAT
GGTCAATTTCCTCAAGACGTAGTCTAGTTTTCTAAGGAAAAATACAACTT
GGCCTGCAGAGGAAAAACTGGTTCAGTACCTGGATTCCAAGAGACAGTTC
TCACCGTTACTCGATATCCATCTGGACAGTTCTCACCGTTACTAGATATC
CATCTGGACAGTTCTCACCGTTACTCGATATCTATTTGGACAGTTCTCAC
CGTTACTCGATATCTATTTGGACAGTTGTCACCGTTACTCGATATCTATT
TGGACAGTTGTCACCGTTACTCGATATCTATTTGGACAGTTGTCACCGTT
ACTCGATATCTATTTGGACAGTTGTCACCGTTACTCGATATCTATTTGGA
CAGTTCTCACCGTTACTCGATATCTATTTGGACAGTTGTCACCGTTACTC
GATATCTATTTGGACAGTTGTCACCGTTACTCGATATCTATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTATTTGGACAGTTGTCA
CCGTTACTCGATATCTATTTGGACAGTTGTCACCGTTACTCGATATCTAT
TTGGACAGTTCTCACCGTTACTCGATATCTATTTGGACAGTTCTCACCGT
TACTCGGACTATTCGCGGTCATAACAGTTGGCCTTTGACCAAGCTTCGAT
GCTTGTGAAAATACTACAATTCCCTGACCGCCCACGATATCCGAACAACC
CGAACGAAATGTCACACGCTGGTTATGTGCTAGTCTTGATGGGTGTCTGG
TACTGTGTGCAAAATGCTCGCTAACCATGGTCTGAGTGTTGGAATGATGA
TGAAACCTTTCGTGAGCGCTCCGGCGCCTTGATGCCTACGAAAAGAGTAT
AAATCTCTGACCAGCTCTTAATGCGGAGACTAGACGGGAACTACCTTAAC
TTGTGAAAAGAGCCCGTTTTCTTTGATGAAAAATAGGTACGGACATTCAT
CAATTTTCATCATAGGGTTCAAGTCTTTCCGTCCACGTGGATTTTTAATA
GGATTTCGTTGAAATAATTAGAAAATGGTATTGTTTGAACTGCTAGCCTC
AGGCGAGAAGGGCAACCTGAGGTAGTTGATCCATGACCGTATGTCCCGTG
CCCCATCCCCCGAGACTGAAATGGTGGCTAATATTCGGCGCTGCTACCCG
GGAACTATTCGACAATCCTCGTCTGAACGTTGGAATGACATAAATATTCC
GTGAGCGTTTCGTCGCGCTGATGCCTTCGAAAGTGCTACAATTTCGTCAT
CAGCAACAGCATGCAAGCAAGAGCGAAACTGAGTCAATCCTCGATCGTGT
CATCGGCCCGACTTCTTTTTTGTTTCGTATCGCTGACGATGAAGTATTTG
TTATTCCTCTTCTAAATGCTTGAAAAAAGAAGAAACCTTTCGTGAGCGCC
TCGGCGGTCTGATGCCAATGAAAAGACAGCAAGTCCATGACCAGCCCTCA
GCCTACTAAGAACAAGCTAATTTGCTTGATTTATATCCAACACATCATGT
GCCCCTTTCCCCAAGGCAAGAAATAAATGTGTTAGTTTGAGGTGACATCG
CACTGACAACCTGAAAGTATTTGACCATCTCGCAGTTATTCTGGAATGAA
GACGAAAACCTTTCGTGAGCGCCTCGGCGCTTTGATGCTCACGAAAAGAC
TACAATTCGCTGACCAGTCACGACATACCAAGGTAATGTGCCCGGATTGG
CGCACCCTCCAATGTCATGTCCATATCTGAGTTGTGTGCTTCGAGCCACT
AGAACAACTTTTAGTACGTTCTAATTGCTTCCAGTAGCTTTTGTTGAGTG
TTGGAGTTATGATTAATTACCCTCTGAATGCTGGGATGAAGACGAAAACC
TTTCGTGAGCACCTCGGTGCCTTGAAGCTTAACGAAAAGACTACAATTCC
CTGACCAGCCGGAACAAGTTGGGACATGCCTAACGCATCAAGCTCTCCCA
TTCCCCAAGGTGTAGATATCGCGTTACTTGGAGGCGATGTAGCACTGCTA
CCTGGAAGTGCTTGACCATCCTCGTCTGCGTGCTGGAGTGATGAACGCCT
TTCGTGAGCGCTATGGCGCGTTGATGCTTACGAAAAGACTACAATTCCCT
GACTAGTCACGACACACTAAGGAAATTATGCCCAGATTGGCGACCCTCAT
GAGTCATGTACGTTTTAATTGCTTGCACTAGCATTTGTTGAGTGTTGGAG
TTATGATTAATTACCCTCTGAATGCTGGGATGAAGACGAAAACCTTTCGT
GAGCACCTCGGTGCCTTGAAGCTTAACGAAAAGACTACAATTCCCTGACC
AGCCGGAACAAGTTGGGACATGCCTAACGCATCAAGCTCTCCCATTCCCC
AAGGTGTAGATATCGCGTTACTTGGAGGCGATGTAGCACTGCTACCTGGA
AGTGCTTGACCATCCTCGTCTGCGTGCTGGAGTGATGAACGCCTTTCGTG
AGCGCTTCGGCGCGTTGATGCTTACGAAAAGACTACAATTCCCTGATCAG
CCACAGTACGGATTGGTCGTCTGTCGAATATAAGTAATATCTCCCACGTC
AACATAGGGCTCAACTGATGACTTGCAGTAATTTCATTCTGTAGTCGGTA
CTGGAAAGGATTTGCAGGTTATGAAATCGTCACCATCATAGAGTTGGTGT
CAACGGTGACATCTGCGAAGAGTTTTGAGCTTACTGAGTTTTTTTTTTTT
CATTTTTGACGTTGGTTGTGTGGATAACCGGGCTAATGTTGGGATTTTTC
CCCCTAATGGATTGTACCCGAACGAGACGATGTGATCATGACGCGCTGTT
GACGCCGGGACGATCTCGAGACAAGAGTGAAGTGATCGCGACCTGGAAAG
TTTCATTGAAGTCGATCACTGAATCGCTGTCCCTGCGACATGTTTTGGTG
GATAGGCACATGCATTGTCGTGGGACAGCCCATTGCGGTGGTCGGCATTG
ATCGTTGTCGGGATGAGGACAATCTGTGTCGTGAGGACCACCGCCTTTTA
ATGGGTTAGGGAAGTCGCAAGTTTGACTAGTCGAGCGGCCACACACATGT
TGCTGTTTCCCTTAGTCTGAAAGTGAGTCGTGCATTGTGACTGCGGTATG
CAGTAGTCATTACGGGAAGCTAAACGGTAGGTCGAGGCTGATCCTCCCGA
CCCGACGTTTCTCTGACCAGGTTGTACAGGACACTTGTTCTTTTATTGTG
TAAAATTCACTCATTTTTTTTTTTTTTAACCCCCGGAAGATCAGGCAAAA
AACCCTTTCCGCTACTTCCACTCTTCGGAAGATTTCCGAGTGTCTGCATT
TCCTTATTAATGGATCAGAGTTATTTATTCCTCTGTTTTGTTCTGTTGTT
TGGCGCGTGAACTGCATCAGGTCACCTCCCTCCACTAGACTTGTTTATCT
TCTTTTCTATGGTGCCGTTTTAGTCTAGTTTTCCATTAAATCCGATTTCG
GTCCAGAACTTAGTGAAGTCAAGTTGTTTTTTTGAAACGAAGCAGTCCCC
GAGAGCTTTCTAAAACGATTTACCGAAGAGTTCATACTCCTTAAACACGC
AAGGAATCTTACCGTCTAATGTATTTCTCGAGACTCGTGCAATGACACTC
CCTTGACCCGTTGTTTGCCTATGCCTTCCAACTCTCCGCCCATGTCATTT
TTGAAATCTGCAGGGAGCTGGGTGTGCAGATTCATAGCATGTGTAATAGC
CTCGCCCAGTATACCGACATCTCGTCTGCGCTCGTGGTCGGGGGCAACAA
AAACGTGAAGGCTCAGGTAATGTAACTGTATACATCTTGTATGAGACGTA
CGTCGAAATTAACGTGTGTTTGCCTTGTAGGTAATTTCTGGTTAGTGCGA
GGTCGGATTCCAAGCCGTTCACTGAGTGTCCGAATTACCTTTTAGTGCCA
ATATATGTCGAGGGGCTGGCATTATATGACACCTTTCGTGCGCTAACCCT
TTGGAGAAATTTGAGGGATTTTGCCTCTTCCGTGTCGACTCCCAGTTTAA
TATACTATGGTATAGTTGATTGATTGTGAAGTAAATGGTCCTGAATGGCA
TGGCGAAAATGGTCATGAGGTTGTAGGAGTATGTAGACGAGAATGGAAGC
AAAAAATAACAGGTGCTGTTATTGGTGTGCCGGTGTGCTCGGGGTTTGAA
AGGTAATTCGTTTGTTCTTCACTCGAATCGGATCAAATACCATGACGTTT
GCTCTTTCTTTCATTTTCGTTAGTTTTGTTTTTTCATGGTTACGCCTGTC
CTGAGCGCCAGATGACATCATTGTGGTGAAGACAAGAAACAAAATAGCAC
CCGCACAGAGCGACTTCAAAAAATGTGCTTCAAGAATCTGGAATTGTCCA
GGGCCAATCGTTCGTTGCCCATGTGACAGCCGGATGTGATGTCCATGAAA
AGTTTTCCAGCGGTTCCTGAATCTACATGAAATGCTGACTGTAGGGAGGT
AATGGAGGTGAACTGTGTGGATTGTCGGAAATTTTGTGGTATTTTTTTCG
TTTACATGATGATTCCATCGTGGCATGGAATTCTATACACCTACTTCTAC
AGCTTTGACCCATCGATGCTTGACGGAGCTGGTGCTAATAACTTGTAGTT
GATCGTGAGATTACGTAATTAGACCTTATCCTGTGATGTGAAGAAGAATG
CAGTCAAATTCGTGAACCTTCTAGTTTTGTCTCTTTGGGAATTTTAATCA
TTCATTTATGGCGTCGAAATCAGTGTTTTGCGCAACTTTTATGATCGGGG
AGGATCGGCCACCTCCCTACAGCCGTAGAATTCTAGATATTTTGACTGAA
GGATCGGATCCCCCCACGATCATACCAAGTTGGACGTAAAGGAGATGTAC
TGGCGTCCTCTCCTGGAAGATGTTTTATAGCCCACAGTAAAACATCCGCG
CCGGTCACAGATGCCAGTATGAAGCACGCACACAATTTAAGGTGTGAGCC
CGGTCGCCCCATGGAAGATTGGTAGGGACTGTAGTCGATCATAATTGTGG
CGCTCGCTGCTGCAGTGGCAGTAGTCGATGTTCTAGACGCAGTCAATGCA
TGGGTGCTTTCGCTTGTCGCATGGTGAACAAAATTCGGCAGAAAGTCCAA
GAGATCTAGAGCTTTTCACGCATGTAAGGACTTCTTCGTCGTTTCAGACC
GCTTATTATGACCCCTGACCCCTGTTTGAAAACAAGGTCTCTCCCCGCAG
TCCAATTTATATATCATAATTTTAGATCATTCGTACAGCTGATCCCTCCT
TTGGCTCGACCCTCGATAGGAGGTTGAGCTTTTGGTGTCAAGGGGCACCA
CCGTAGCTACCCGTCGTTTCAAGTGACTAGTTGTTGGATATGTGGAACCT
CCAAGCCCGTCGCCTGTTATCACTATACACTGGCATCCTTTGCTCTTGAT
GATGCGCGATGGCCCGGTGTGTGTGCCAATATTTGTGCTGCTGCAGAGAC
TCACATTGCTGTAAGTATTCACTATCCCCCCCTCCTCCCCCGAAAAACAA
ATCTGCACGCAACAGGTACGTGCAGACAATGAAGTAACCAAGCAGCAGAT
CATTTTGTTCACCACAGCGTGCTGGCATGTTCCCTTACTTGGAAATATGA
TGTATTTGCGATGCATGAACATGAAAAAAAAAAGGTTATTTGAGCTTTTT
GCAATTAATTTCTTGAATATTATTTTAGGGACATGTACATTCGAAAACAA
GGAATTAAGAGCAAAACTGCGAGACGGGGTAGGACTCCCGACGGCGGGTA
AACCCAACACTCGTTCCAATTTCATCGTGGAAAGGAAATAGTTTCAGCAT
TAAGGGAGGGCTACTAATATGTATCGATCCCCCATCTTTTGGGATGAAAT
GTCGGTCTTGATAACTCGAGATGCCCGGAAAGTCAGAGAAACAACGGGAA
TGTCACCGAGAATAATTTGACCCATGCCTACTGTAGTTATTATCACGCCG
TTGAATCGTGCAGTTTTAGGGCAGGGGTACTGCACACTGAAATTCATCGC
TCTGTGTTAAACGGAGGCCAAGAGTCGCTCATAAGGCCGCAGGGGCATCC
ATCCACGTTTCCCTCGTGGTAGGCCGCAGTCCAACGAGTCGTGGGAGCGC
CTCATGCTACTCCAGAAGTACTAGATGAAATAGCGTGAGTGTTTGTCACA
GATTTCGTTGGACTTTTTTGTAGTTTTTTGTTGATTTGTAACAAAGATGT
AGTCACATTTCTTGGTCGAAAAAAACTTGTGGGTGTCATTTTCGTGCCGT
GTTAATTGAAAGTGCAGGAAGCAGAGCTGCGGGCCAGGCCCGATATCGTC
ATCTGCACACCTGGCCGTATGGTGGATCACCTGACCAACTCTGCCTCGGT
ACACATGGATGATGTGGAGATTCTCGTCTTGGATGAGGTAATTTGCAGAG
TCGTATATGGGTCATGCGTATTTGGGCGTTTCTTACAGTTTTGATCGATC
GGCGAAGCATGGTGTAGGTGACTTGTGTACTGAAGAGCTACAGGTTCATG
GTGGATGACGGGTGAAAGCATACCCCGTAGACGAGTGATATTTTCTCGGG
TGTGAAGGCTTCTACAGTGAAGATTTATATTGATGGTCCCTTTTATTGTG
AAAAATGCGTCAAGAGCATCCTCGAAACAGGGGGCCTTGTTTGTCGTGTT
GGATGGGTAATCGAATCCAAATTTCGAGTATAATGGCGTTCTGTCATCAC
TCGTCCCCGGAGTATGTTCTTTTCTAACGCACACTACTCCACGGACCTAC
GCCCGAACGGGCAGGGTAGCTCGTGTACTGAGTATGACTGGAAGCCTAGT
CAGAGGTCCTTTAGTAGGTGAAACTCGTACACTGCCTACCCGGTTCGGCC
GAACCGGGATGGCTCCTACCCTCCAGAGGAATAAATAACTCTGTTCTGTT
GAAGAAAATGTAGATATGTTTGGGCGAATGTCTGAATGTGGAAGCAGCGG
AAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAAACAACGTACACTG
CTTTGGCCTGCTGCGGTGAAGAAGATGCACACAGTGGATTGACAGTTGAC
GTGTAGTACAAAACGTGGGAGATATAACCAAGCTCCCGCTAAACCTGCTG
CTATTATTTTTGTATTCCCTACTAATTACTTTCTAGATGAAAAACTATGT
CGACTGTGATTTTTTCTATAGGAACTCTCATCGACGTTGAACCGTTGACG
ACTGCAGGGTGCACATGTTCTAATATTTTCCGTTGAGGAGGTTTTGTAAC
TTTTCGAATGTTGTTGCGTCTGCCTGTTGTGCGGTAAGGCGGATCGTTTG
CTGGAGCTGGGTTTCCAAGAGGAAGTGGCGGAGCTGGTCAAGTCATGCCC
GAAAGGACGGCAAACGTTGCTGTTTTCAGCAACTATGAACACCAAAGTCG
ATGATTTGGCCAGCCTGGCTCTCAACAAGGTGTGTGTATGTGTGCGGTCG
CAGTTCCCCGCCTTGAAATAGTCAAGGGGAAGTCAAAGTTGGAGGTATTC
AGCATATGTCATCAATAAAAAAAACTCAGTCTTATCTCATGGTCAAATTA
TTGATGGACCGTCTATGTACAGTACCATTCGACGTAAGCCAATGCTCTTC
GATTCAGTATACTGGCATGAACTGGCGAGAAATAATCGGGGAAGCAGGTA
CGCACGTGGCGAGTACCACGTAATTTCGCGATGGCTTTTTTTGCCAAGTT
TGGAAAGTGGAACTGCGTTTAGCACAGTAAATGCGTAGTGTACAGGTGTT
GATTTTATACTGTGATGGTCTTGAAAAATTCAAAGAAATTCGACGTCGGA
GAAAACGAGTTGAAATTGAGTCAAGGTGTTGTTTTAAGAGAACATATGTC
CAGTTTGGTTTTAGTGATACTGTATTAAACCTCGATTTAAGTGTGTTTTT
TCAAGGACCACTTCGTTCCAGTGTAGGTCGAAGAAGAGGTTGGTTTCACG
CGAGTTGCAAGCTATACGCTTGCCTTGTTGTCTTTGGTCGTCTTCTCTAG
TTCCATTTTTTTTTTTTTTTAACCACCGTATGTTTCGCTCGTTATACGAC
ATTTTCTCTCATGTTCACACATCATCAACGCAGCCTGTGAGGGTCAGGGC
TTCGCCGCTAAACTCGGCCCCGCAAAGACTTGTGCAAGAATTTGTGCGCA
TCCGCCAGAGCAGGGAGGAGGATCGCGAGGCGATCTTGCTGTCGCTGCTG
GCCCGGTGAGGAGTAAAGAAAGAGCATCGGCATCGTATACAGTCATCGCC
CCGTACTCTGCGTGGTGTAGGGAAATGGTAACGTTATATTTCGGCAAGCC
GAGAATGGCGCTTTTCTTTGAGAGGGTACATATCAAACGGAGAAGGGGTG
AGAATTTTATGAAGCTCTGGGGGGCGAACCTCAAGCTATCTACGGTGAAT
TGGTCTGTTTTGATACTTGCTTGATTGTCGTTTTATGCTGTTTCCGTGTG
CAGTGTCGATATAGAAGTGGGTCTGATATCTCGCCGCGTTTACCCTGCCA
CAAAAGCAGGACTACAATCAGGTTCACCTTTTGTCAAGTATGATCAAGTA
ACGAGTGATATGTGTGCCCTGCCAGAAATCACCGTAGTGCCAGAATACGG
TATATATTGATTCGAGGTATAGTAGGATTGATGACCATGTGGGTCCATAA
ACATCGTAAGCATGTGCACCCATTTGGTTTTGCCAGATTTAGCATTGAAA
TAGAGGAACTCATGATCTGGCTGAGCATCGAAATCTCCATTTCTCACTCT
CTCTATAAATATATGTTTTCCAAACAAGCATTAGTTTCTCATGACCCAGT
ATCTTGAGAGCGAGTCCGATCTGTAGTCTACAGTCACTAGATACCTCCCC
GCAATTCGTGTTCGTCGTTGTACTCATGGCACGGTGCGCTTGAAGTATGG
ATTATCTTGCATGAAGATCCGTTGTTGGAACTAACCCGGCATAGGGTGAA
ATAACTGTTCCGGAACGTCAGCTACAAGTCTGTGTTAATTAACGATACAA
CGTCTCCTTTTTCATCATACCTTTTGTGATAATGCCTGCAGGACTTTCAC
AACGAAAACCATAGTTTTCTTCGACACGAAGGTTTTGGCGCACAGACTCA
ATATCATCCTTGGCCTGGCAGGAATCAGGTCAGCCGAGCTGCACGGTAAT
CTCGCCATGACGCAGAGGCTGGAGGCCCTTGATAGGCAAGTCGTAGGTTG
A
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6009:3021..13021-

>mRNA_H-paniculata_contig6009.13683.1 ID=mRNA_H-paniculata_contig6009.13683.1|Name=mRNA_H-paniculata_contig6009.13683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig6009:3021..13021- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGATGTTTGTGCGAGCGCCACTACTGGAAGCGGAAAGACCGCAGCTTT
CATGTTGCCAATTCTTGAGCGTCTATTGTATCGGCCGAAGAAAGTGGCGG
TTACTCGGGTCATGGTCGTCACGCCCACGAGAGGGATGTTTGTGCGAGCG
CCACTACTGGAAGCGGAAAGACCGCAGCTTTCATGTTGCCAATTCTTGAG
CGTCTATTGTATCGGCCGAAGAAAGTGGCGGTTACTCGGGTCATGGTCGT
CACGCCCACGAGGGAGCTGGGTGTGCAGATTCATAGCATGTGTAATAGCC
TCGCCCAGTATACCGACATCTCGTCTGCGCTCGTGGTCGGGGGCAACAAA
AACGTGAAGGCTCAGGGAGCTGGGTGTGCAGATTCATAGCATGTGTAATA
GCCTCGCCCAGTATACCGACATCTCGTCTGCGCTCGTGGTCGGGGGCAAC
AAAAACGTGAAGGCTCAGGAAGCAGAGCTGCGGGCCAGGCCCGATATCGT
CATCTGCACACCTGGCCGTATGGTGGATCACCTGACCAACTCTGCCTCGG
TACACATGGATGATGTGGAGATTCTCGTCTTGGATGAGGAAGCAGAGCTG
CGGGCCAGGCCCGATATCGTCATCTGCACACCTGGCCGTATGGTGGATCA
CCTGACCAACTCTGCCTCGGTACACATGGATGATGTGGAGATTCTCGTCT
TGGATGAGGCGGATCGTTTGCTGGAGCTGGGTTTCCAAGAGGAAGTGGCG
GAGCTGGTCAAGTCATGCCCGAAAGGACGGCAAACGTTGCTGTTTTCAGC
AACTATGAACACCAAAGTCGATGATTTGGCCAGCCTGGCTCTCAACAAGG
CGGATCGTTTGCTGGAGCTGGGTTTCCAAGAGGAAGTGGCGGAGCTGGTC
AAGTCATGCCCGAAAGGACGGCAAACGTTGCTGTTTTCAGCAACTATGAA
CACCAAAGTCGATGATTTGGCCAGCCTGGCTCTCAACAAGCCTGTGAGGG
TCAGGGCTTCGCCGCTAAACTCGGCCCCGCAAAGACTTGTGCAAGAATTT
GTGCGCATCCGCCAGAGCAGGGAGGAGGATCGCGAGGCGATCTTGCTGTC
GCTGCTGGCCCGCCTGTGAGGGTCAGGGCTTCGCCGCTAAACTCGGCCCC
GCAAAGACTTGTGCAAGAATTTGTGCGCATCCGCCAGAGCAGGGAGGAGG
ATCGCGAGGCGATCTTGCTGTCGCTGCTGGCCCGGACTTTCACAACGAAA
ACCATAGTTTTCTTCGACACGAAGGTTTTGGCGCACAGACTCAATATCAT
CCTTGGCCTGGCAGGAATCAGGTCAGCCGAGCTGCACGGTAATCTCGCCA
TGACGCAGAGGCTGGAGGCCCTTGATAGGCAAGTCGTAGGTTGAGACTTT
CACAACGAAAACCATAGTTTTCTTCGACACGAAGGTTTTGGCGCACAGAC
TCAATATCATCCTTGGCCTGGCAGGAATCAGGTCAGCCGAGCTGCACGGT
AATCTCGCCATGACGCAGAGGCTGGAGGCCCTTGATAGGCAAGTCGTAGG
TTGA
back to top