mRNA_H-paniculata_contig6009.13682.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: D7FJM8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM8_ECTSI) HSP 1 Score: 172 bits (437), Expect = 6.080e-48 Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQGEGVEIKSRAVPQTVIDHFR 283
FKSGDV VLVATDLAARGLDITGVHTVINFEMPRS +SYIHRVGRTARAGCGGRSVTLIGESRR++MK+VLKTQGEGVEIKSRAVPQ+ IDHFR
Sbjct: 599 FKSGDVTVLVATDLAARGLDITGVHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGESRRIVMKEVLKTQGEGVEIKSRAVPQSAIDHFR 692
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: A0A835YJC4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC4_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.320e-43 Identity = 78/94 (82.98%), Postives = 88/94 (93.62%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQGEGVEIKSRAVPQTVIDHFR 283
FK+G+V VLVATDLAARGLDITGVHTVIN+EMPRS ++YIHRVGRTARAGCGGRSVTLIGESRR++MKDVLK Q E E+KSRAVPQ+VIDH+R
Sbjct: 577 FKAGEVQVLVATDLAARGLDITGVHTVINYEMPRSRDTYIHRVGRTARAGCGGRSVTLIGESRRLVMKDVLKIQAEKAEVKSRAVPQSVIDHYR 670
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: A0A482SS31_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS31_9ARCH) HSP 1 Score: 115 bits (288), Expect = 8.250e-28 Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQG------EGVEIKSRAVPQTVIDHF 280
F+ G+V VLVATD+AARGLDI GV TVIN EMPR +Y+HRVGRTARAGCGGR++TL+ + RR +MK+VLK +G +G +I SR + +V+ H+
Sbjct: 374 FRQGEVDVLVATDVAARGLDIQGVQTVINSEMPRDVSTYVHRVGRTARAGCGGRAITLVSDERRKVMKEVLKGEGGKMSSEQGGQILSRTIASSVLVHY 472
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: A0A7S2V390_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V390_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.350e-26 Identity = 58/106 (54.72%), Postives = 74/106 (69.81%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQGEGVE------------IKSRAVPQTVIDHFR 283
FK G+V VL+ TD+AARGLD+ GV TVIN +MPR+ +YIHRVGR+ARAG GR+VTL+GE RR +MK+VL+ +KSR VPQ+V+DHFR
Sbjct: 350 FKDGEVGVLLCTDVAARGLDVAGVRTVINLDMPRTRTTYIHRVGRSARAGKSGRAVTLVGEGRRAVMKEVLRHHXXXXXXXXXXXXXXXSMMKSRTVPQSVVDHFR 455
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: A0A1E7FR92_9STRA (DEAD-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR92_9STRA) HSP 1 Score: 109 bits (272), Expect = 6.260e-26 Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQGE---------------GVEIKSRAVPQTVIDHF 280
F+ +V +L+ATDLAARGLDI+ V TVINFEMP E+YIHR+GRTARAG GGRS TLIGE RR +MK+++K E I+SR++P VI HF
Sbjct: 302 FRKSEVDILLATDLAARGLDISRVETVINFEMPNQVETYIHRIGRTARAGRGGRSCTLIGEGRRHLMKEIMKDASERKQITPNESSTNRSQSATIRSRSIPAAVIAHF 409
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: A0A2G8KK60_STIJA (RNA helicase n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KK60_STIJA) HSP 1 Score: 110 bits (274), Expect = 6.500e-26 Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQGEGVEIKSRAVPQTVIDHFR 283
FK V +LVATDLAARGLDI GV TVIN MP + + Y+HRVGRTARAG GGRSV+LIGES R ++KD++K V KSR VP V++ +R
Sbjct: 485 FKEAQVDILVATDLAARGLDIEGVKTVINLTMPNTAQHYVHRVGRTARAGKGGRSVSLIGESERRMLKDIIKQSKTAV--KSRTVPHEVVERYR 576
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: R7UVE3_CAPTE (RNA helicase (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UVE3_CAPTE) HSP 1 Score: 109 bits (273), Expect = 8.050e-26 Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQGEGVEIKSRAVPQTVIDHFR 283
FK GDV VL+ATDLAARGLDI GV TVINF MP + YIHRVGRTARAG GR++TL GE R ++K+V+K + +KSR VPQ V+ FR
Sbjct: 325 FKDGDVDVLLATDLAARGLDIDGVRTVINFTMPSTCAHYIHRVGRTARAGKSGRAITLAGEQERKVLKEVVKKAT--LPVKSRVVPQDVVTRFR 416
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: UPI001EE61022 (LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX27 n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE61022) HSP 1 Score: 109 bits (273), Expect = 8.870e-26 Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLKTQGEGVEIKSRAVPQTVIDHFR 283
FK GD+ V++ATDLA+RGLDI GV TVINF MP + + Y+HRVGRTARAG GRSVTL+GE R ++KD++K +KSR VP VI FR
Sbjct: 462 FKDGDIDVMLATDLASRGLDIDGVKTVINFTMPNTVKHYVHRVGRTARAGKSGRSVTLVGEKERKMLKDIVKKAK--TPLKSRVVPMEVISRFR 553
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: A0A7S2ECJ9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ECJ9_TRICV) HSP 1 Score: 108 bits (270), Expect = 2.000e-25 Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLK---------------TQGEGVEIKSRAVPQTVIDHF 280
F+ G+V VL+ATDLAARGLD+ GV V+NFEMP +Y+HR+GRTARAG GGRS TLIGE RR +MK+V+K T + I+SR +P V+ HF
Sbjct: 246 FREGEVDVLLATDLAARGLDVPGVDAVVNFEMPNQVSTYVHRIGRTARAGRGGRSCTLIGEGRRHLMKEVIKDAAEKSRDAAAKGGATSAQAGVIRSRTIPPAVVAHF 353
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Match: A0A448ZBQ2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBQ2_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.270e-25 Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 2
Query: 2 FKSGDVMVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVTLIGESRRMIMKDVLK-----------TQGEGVEIKSRAVPQTVIDHF 280
F+ G+V +L+ATDLAARGLDI+ V TV+NFEMP E+YIHR+GRTARAG G+S TLIGE RR +MK+++K Q + I+SR++P VI HF
Sbjct: 514 FRKGEVEILLATDLAARGLDISRVETVVNFEMPNQVETYIHRIGRTARAGRRGKSCTLIGEGRRHLMKEIMKDATDRTKIASDNQTQKAVIRSRSIPAAVIAHF 617 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6009.13682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6009.13682.1 >prot_H-paniculata_contig6009.13682.1 ID=prot_H-paniculata_contig6009.13682.1|Name=mRNA_H-paniculata_contig6009.13682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp MVLVATDLAARGLDITGVHTVINFEMPRSPESYIHRVGRTARAGCGGRSVback to top mRNA from alignment at H-paniculata_contig6009:707..2552- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6009.13682.1 ID=mRNA_H-paniculata_contig6009.13682.1|Name=mRNA_H-paniculata_contig6009.13682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1846bp|location=Sequence derived from alignment at H-paniculata_contig6009:707..2552- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6009:707..2552- >mRNA_H-paniculata_contig6009.13682.1 ID=mRNA_H-paniculata_contig6009.13682.1|Name=mRNA_H-paniculata_contig6009.13682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig6009:707..2552- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |