mRNA_H-paniculata_contig6008.13681.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6008.13681.1
Unique NamemRNA_H-paniculata_contig6008.13681.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6008.13681.1 vs. uniprot
Match: A0A6H5L995_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L995_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 3.770e-75
Identity = 130/172 (75.58%), Postives = 145/172 (84.30%), Query Frame = 2 
Query:  578 RGIDVSEV--------LHPGAGGGGGGKANKPLRDCVLNVERVRVSTKQLEDDLTNKGAPPGLNGLVKGLIKNYKLDESLRQGVMYIESSGDRRTADSAGREALEYLAQTAEYFPPELDERTGMAKVMNAEALEFTVNALGATRAKLDLYLSKIPPDALREARAELKAEGGD 1069
            +GID+SEV        +H GAG  GG KA KPLRDC+LNVERVR+STKQLED LTN GAPPGL GLVKGLIKNYKLDESL+QG  YIESSGDR TA SAGREALEYLAQTAEYFP E+D+RTG  K +++EALEFTVNAL ATRAKLDL+LSK+P DAL EARAE+K+EGGD
Sbjct:   90 KGIDLSEVXXXXXXXXMHLGAGSSGG-KATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGD 260
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BLAST of mRNA_H-paniculata_contig6008.13681.1 vs. uniprot
Match: A0A7S2XY69_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY69_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.100e-21
Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 2 
Query:  635 KANKPLRDCVLNVERVRVSTKQLEDDLTNKGAPPGLNGLVKGLIKNYKLDESLRQGVMYIESSGDRRTADSAGREALEYLAQTAEYFPPELDERTGM----AKVMNAEALEFTVNALGATRAKLDLYLSKIPPD-------ALREARAELKAEG 1063
            K  KPL +C+ +V  V+++TKQLEDD+TN      +    + L++NYKL+E+LRQGV Y+ES+ +R  A    +EALE L    EYFP   D  TG     +  +  E ++F+V AL +T   L+ YLS +P +       ++ E  AE +A G
Sbjct:  118 KPTKPLEECLESVALVQLTTKQLEDDITNGQEIGDIPAQAQLLLRNYKLEENLRQGVQYLESNAERVEATKYAKEALEDLILITEYFPESYDNFTGKRLPSSLTLTPEKIKFSVKALSSTTKALEGYLSTMPVEMVAKVKQSIAEDMAESEASG 271
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BLAST of mRNA_H-paniculata_contig6008.13681.1 vs. uniprot
Match: A0A7S3TS97_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TS97_9SPIT)

HSP 1 Score: 57.0 bits (136), Expect = 2.850e-5
Identity = 42/157 (26.75%), Postives = 74/157 (47.13%), Query Frame = 2 
Query:  635 KANKPLRDCVLNVERVRVSTKQLE--------DDLTNKGAPPGLNGLVKGLIKNYKLDESLRQGVMYIESSGDRRTADSAGREALEYLAQTAEYFPPELDERTGMAKVMNAEALEFTVNALGATRAKLDLYLSKIPPDALREARAELKAEGGD*LKH 1081
            K+   L++ +  + RV+ +T Q E         D+        LN +    + NYKL + +     Y   + +   A  AG+EA++ L    EYF  EL + +G+     +    F V+A+ ATR KLD +L  +P + ++ AR +++ E    +K 
Sbjct:   98 KSVNELQEALYLISRVQEATVQQERLVSTGKFKDMQRNSIKMALNMM----LNNYKLGDQIVVASAYASPADNVFKASQAGKEAIDVLETAQEYFAKEL-KVSGLTDTQRS----FIVDAMTATRTKLDNFLKFMPAETVQAARKQVEDENDANIKE 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6008.13681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L995_9PHAE3.770e-7575.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XY69_9STRA3.100e-2138.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3TS97_9SPIT2.850e-526.75Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6008contigH-paniculata_contig6008:7228..11540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue8.4e-07
Seed eggNOG ortholog159749.K0R908
Hectar predicted targeting categorysignal peptide
EggNOG OGs2C1G4@1,2S3K1@2759,2XCB1@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007080.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons3
Model size1830
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6008.13681.1prot_H-paniculata_contig6008.13681.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6008 7487..10782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.1875863-UTR-H-paniculata_contig6008:7227..74861622930668.1875863-UTR-H-paniculata_contig6008:7227..7486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6008 7228..7486 +
1691481398.0340695-UTR-H-paniculata_contig6008:7227..74861691481398.0340695-UTR-H-paniculata_contig6008:7227..7486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6008 7228..7486 +
1622930668.2543485-UTR-H-paniculata_contig6008:10782..115401622930668.2543485-UTR-H-paniculata_contig6008:10782..11540Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6008 10783..11540 +
1691481398.0872002-UTR-H-paniculata_contig6008:10782..115401691481398.0872002-UTR-H-paniculata_contig6008:10782..11540Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6008 10783..11540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930668.2046547-CDS-H-paniculata_contig6008:7486..79271622930668.2046547-CDS-H-paniculata_contig6008:7486..7927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6008 7487..7927 +
1691481398.0463293-CDS-H-paniculata_contig6008:7486..79271691481398.0463293-CDS-H-paniculata_contig6008:7486..7927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6008 7487..7927 +
1622930668.2206793-CDS-H-paniculata_contig6008:9088..93031622930668.2206793-CDS-H-paniculata_contig6008:9088..9303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6008 9089..9303 +
1691481398.06368-CDS-H-paniculata_contig6008:9088..93031691481398.06368-CDS-H-paniculata_contig6008:9088..9303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6008 9089..9303 +
1622930668.234674-CDS-H-paniculata_contig6008:10625..107821622930668.234674-CDS-H-paniculata_contig6008:10625..10782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6008 10626..10782 +
1691481398.0769823-CDS-H-paniculata_contig6008:10625..107821691481398.0769823-CDS-H-paniculata_contig6008:10625..10782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6008 10626..10782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6008.13681.1

>prot_H-paniculata_contig6008.13681.1 ID=prot_H-paniculata_contig6008.13681.1|Name=mRNA_H-paniculata_contig6008.13681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
MQPTLRRSASLALILAPYICNAFLALSPGAAIVHHRTITPEVCTTTMMST
PGADGGEASSSWSRGAFLSQGASSATSAVVGWTVIGSASVTAPGRASAKD
IVGIDVRGIDVSEVLHPGAGGGGGGKANKPLRDCVLNVERVRVSTKQLED
DLTNKGAPPGLNGLVKGLIKNYKLDESLRQGVMYIESSGDRRTADSAGRE
ALEYLAQTAEYFPPELDERTGMAKVMNAEALEFTVNALGATRAKLDLYLS
KIPPDALREARAELKAEGGD*
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mRNA from alignment at H-paniculata_contig6008:7228..11540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6008.13681.1 ID=mRNA_H-paniculata_contig6008.13681.1|Name=mRNA_H-paniculata_contig6008.13681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4313bp|location=Sequence derived from alignment at H-paniculata_contig6008:7228..11540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAGTGTTCCAACCTGTTCACGCCGACAAGCGGACTGTTACGCTCGTG
CACTAGTGGAGTCTGCAGATCCGCAGAGACTGCCGCGGCTATTGTTTGCG
TGCTACTTGATGCCGTTGGCTAGAACTTGTGCGACGAACTAGTTGAAGTG
TGTGACGTGCAAAAACAACAACTGACGCGGCAGCCCGCCTGATTGGACCA
GCACTACAACGCAATCATTGAAGTCAGCACGAGCACACAGCAGCTCAACC
ACATCCAACATGCAGCCTACTCTGAGGCGATCTGCCAGCCTGGCTCTGAT
ACTCGCCCCATATATATGCAACGCATTCCTTGCGTTGTCGCCGGGAGCAG
CGATAGTGCATCATCGTACCATCACCCCTGAAGTTTGCACAACGACTATG
ATGTCGACGCCTGGTGCGGACGGAGGGGAAGCCTCGTCATCTTGGTCCCG
CGGAGCTTTCTTGTCACAGGGAGCTAGTAGTGCGACGTCGGCCGTTGTGG
GTTGGACAGTGATCGGCAGTGCCTCCGTCACCGCGCCCGGACGAGCTTCT
GCGAAGGATATTGTCGGCATTGATGTCCGAGGGATTGACGTGTCGGAAGT
GTTGCACCCCGGCGCTGGAGGAGGAGGAGGAGGCAAGGCAAACAAGCCGC
TACGTGACTGCGTGCTGAACGTTGAGCGTGTGCGAGTGTCGACAAAGCAG
GTGGAACAAAAGATGTATGCCCCCATGCTATCATAGTACACGAGTATATA
TTTGACTAAGAGAGGTGGTTATAACACTGTTCAAGGAATATATCCCGTCC
GCGCAGCCGGTGCGTTAGACTGAAGTCAGTGTTGTTGATTGCAGACTATC
GGTAAATTAGAGGTGGTGTTTTTTTTTCTAGGATTTATGAATGCTAGGAT
GGAACAGCAGGATACATTTTGGTTGTCTTCACAAGAGCCCTAACCGTCTA
TATTTCTCTCGTCATGGTCCAACCCTTTCCCGGGTATTGTCATAATCCGA
AGATTTTCGAACTTCCCCCTTCTCTACTGCGAAGTGTGCTTTATCTCTCT
GTTTTTTTCATCGCGAATCAGTCCTCCTGTTAGGTACTCCAGTCCGAAAC
TGGCACTGTTCCGCCTCGATTCTTCCTTTGTATTATCTCACGGTTTTCTT
TTAGGAACGGCTAATTTTTGTAGTGTGGGGTAGATTCTGTTTGACTTCAA
TTAATACGGAAAATAGAAGGGGGATTTTTAAGTTGATCGACATATACCGT
GCCTTATCTCACACTACAGAGTCCCCCATGCAATCGCGTGCAATAAGCCC
AATTTACTGTCATGTCACGACGACGGAACGCAGCACCCCCGTGTAACTAA
ATCTCACTGGGGTACCGAACGACAAGAAGTGTCGCTGCGCTCGAGGAGGT
CTTCTCCTAGGTTCCGCTTTGCTTCTCGCCCTGCAGTTAGCTTCTCGCCG
TCATCGTCGTGGGCTGGCTAGCTAGCTGCGGTCTGTAACTTTTCTCGGCT
GACGGTACACAAACACGCGCGCGTGCGCGCGCAATGAATATATATATTCA
CGTATATATCACTCCAAGCTGCCCAAGATGTCAACTCTGTATTTGCCAGG
TGCTTTTTGGCGCATGTTCACAGACAATATTGGCGTGGTATCGGTGTGCT
AACTAGCACTACTGACAGAGACCAGACTGGCATAAGGCGGTCGCGATATA
CGATCATGAGCTTTGCGCTTCAGCCTAAAAGTTCGAGTGTTTGCATACCA
AGTACTTGAGTTTGTTTCACTTGAAATACAGGTTATTGAAACTAGAAACA
TGTTCGTTTCCTCCCCACTACCGATCATTTTCTTTCAAACTTTGGCGTGT
TCTATGCACAGCTCGAAGACGACCTCACCAACAAGGGCGCGCCGCCGGGC
TTGAATGGATTGGTGAAAGGTTTGATAAAAAACTACAAGCTGGATGAAAG
TCTGCGACAGGGAGTTATGTACATCGAATCGTCGGGCGATCGGAGAACAG
CGGACTCCGCTGGCAGAGAAGCGCTGGAATACCTCGCGCAGACTGCCGAG
TACTTTCCACCAGAACTGGACGAAAGGTACGCCAAAGCGTCTAATCCAGT
GCCTTCCTATTCTTCTGGCCGAATTGTGCGGCTGGCATATCCCCTGCTAT
GCTCGCTCGCTCAACCGCGGGGGAGGTTCTGTTGGTCCTTCCTTGGAAAA
TCCGATAAAATGGAAAAAGTGGAGAAATGATAAAAGGTCGTCGTAGCGGC
GAGTCCTCTGGCGTGAAGTGGCGGCAATGGCTTGCCTGAAAAACCGTCTT
TCACATAAACCCTGAGGGAAGACGCGAAAAAACGGAAAATTATACAATCT
GAATCCCCCCCAAAAAAAGTAAATGTCCCCTTGATATATATATATCTTAT
CCGTACTGTTTTTTCTGGGGTTTCCACAGAGTTTTTATGGGGAATTTTTT
TTTCATTTTTTTTCAAAGGCGAAGACGCGAAACGATCCATAGCATGTGAT
TTTTAGGTGAAATATCAATAACACATTTACAAACAAATTCACTGTAATTA
TTAACACAGCAATAGCATATAATAGTGCAGTCAACTGCATTTTTGTAGCA
AGATATTATAATATAATTCATTTTGAGACCAGCTTTCCGCCCAAGGTTTG
ATGAAAATTCTCTCCCATCGCGCGTGTGTTCAGTCATGTAGAATATGTCC
GCCGATCGTAGCGTTGTATTTGGTAGCTTTGGTTCCCCTCAGCTCTAACA
AATTGAGCACCTTGAGGCAGAGATGTCTAGATCGCTTGCAGCATATGTGG
TGTGGGCTCCATACATAAAGCCGGGGCCTATACTTTCAACGCGGTGGTGC
GCAAAGCTGTGCTGTACCGAAGACCACCATGAGATACGAAGAGACCATGA
GATAATGGCGATGAACCCTTGGAAAATGAAAGATGCATCCATCATGCAGA
AAGAGATGCCGGACAATCACTCCATCTCACGTTTTTTTAACCCCTTGTGA
TAAAGAGTTACCCCCCACACTAGGTGTCGTTCGAAAGCTGATGATTATGG
ACTTCTGGCATCTGCACTTGCATTTGGTACATATTATGGGCGCGTTAGAA
GCTGGCAAAAAGAGCTGTCACTCGTCACTCGACCGCAGAAACGCTGGCTC
GAGGTGGAAATGGAAACAAAAGACCCTTGAGCGGTGAAATCGTTATCGCT
ACCTCTATGTAGAACAGCGTAAAATTATAAAGCGAGCGTACAAATATAGG
GCGCGAAGCAGCTGAAGAGAGCTACTCTAGGTTTTCGTGCACATAAGAGA
GGAATACCCAATAATCTTCTCCACGGTTCGGTTGCTGCAATCCTTGGTTT
TAGCGTCTTTCGCCTTCTCGTTGCTCGTCTTTATTCAACACTCACCAGGA
CCGGAATGGCGAAGGTGATGAACGCCGAGGCGCTAGAGTTCACTGTGAAT
GCACTGGGCGCGACACGGGCGAAGCTCGATTTGTATCTATCCAAGATTCC
GCCAGATGCGCTGCGAGAGGCCAGGGCAGAACTCAAGGCTGAGGGGGGAG
ATTGACTAAAACACGGTTGAAGTATCTTTTTGCGTCCACCGGTCTTGGGA
ACATCGTTGGACAGCCTTTGGGAAGTTATGGATCTAGCGGTCTAGCCTAT
TTACGTTGAGATATTGGACGGTTTTGGAGTTATCTATGCTCCTTCAGCCC
ACCATGATTGAAGTCAAGAGTGTTTTTATTAGATTATGGGTATGAGCTCA
CGTTATAGAGAACGATAAAAGATGCCCGCAGTTTTCCGATTGGTTAATTT
AAAAAAAGGGAATATACGATTGGTAAAAAAAAATGGTTGGCTAGTGACGT
CACTCATGGTCATGACATCACTCTTCGGACATAGTAGTTTGCTGTCATTG
ACGACATCACGTTTCTGTATAGGGGGGATCCCGATGTCACAATATAGGGC
GGTGGTGTGGTTGCCCGGTTTGGCCCCTTTATATCACGACCCCGCTCTAT
GAGAGCGGCTACCGCATTATAGAGGAATAATTTGTAGTGCAGTACTGCGG
AGGCCTGATAGTGCTGTATCGCACTATACAGGGCCTTACGCCAGGTGTGT
GGTTGAAAAATTGTTTCAGCTAGAGACAAATAGGGTTCAAGCCGAGGACA
GTACAACAAACGCAATGCTATGTAAGTTACTGTAATCACCAAAACGTGTT
GTAGCAATTCATGACGAACAGGAGTAAACCTACTTGAAATATACCATGAG
CGTTGGCACTAATGATTTACATAGCAGTTGTTATAACGTTGGACGTTGAT
TCATGGACTGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig6008:7228..11540+

>mRNA_H-paniculata_contig6008.13681.1 ID=mRNA_H-paniculata_contig6008.13681.1|Name=mRNA_H-paniculata_contig6008.13681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig6008:7228..11540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCCTACTCTGAGGCGATCTGCCAGCCTGGCTCTGATACTCGCCCC
ATATATATGCAACGCATTCCTTGCGTTGTCGCCGGGAGCAGCGATAGTGC
ATCATCGTACCATCACCCCTGAAGTTTGCACAACGACTATGATGTCGACG
CCTGGTGCGGACGGAGGGGAAGCCTCGTCATCTTGGTCCCGCGGAGCTTT
CTTGTCACAGGGAGCTAGTAGTGCGACGTCGGCCGTTGTGGGTTGGACAG
TGATCGGCAGTGCCTCCGTCACCGCGCCCGGACGAGCTTCTGCGAAGGAT
ATTGTCGGCATTGATGTCCGAGGGATTGACGTGTCGGAAGTGTTGCACCC
CGGCGCTGGAGGAGGAGGAGGAGGCAAGGCAAACAAGCCGCTACGTGACT
GCGTGCTGAACGTTGAGCGTGTGCGAGTGTCGACAAAGCAGATGCAGCCT
ACTCTGAGGCGATCTGCCAGCCTGGCTCTGATACTCGCCCCATATATATG
CAACGCATTCCTTGCGTTGTCGCCGGGAGCAGCGATAGTGCATCATCGTA
CCATCACCCCTGAAGTTTGCACAACGACTATGATGTCGACGCCTGGTGCG
GACGGAGGGGAAGCCTCGTCATCTTGGTCCCGCGGAGCTTTCTTGTCACA
GGGAGCTAGTAGTGCGACGTCGGCCGTTGTGGGTTGGACAGTGATCGGCA
GTGCCTCCGTCACCGCGCCCGGACGAGCTTCTGCGAAGGATATTGTCGGC
ATTGATGTCCGAGGGATTGACGTGTCGGAAGTGTTGCACCCCGGCGCTGG
AGGAGGAGGAGGAGGCAAGGCAAACAAGCCGCTACGTGACTGCGTGCTGA
ACGTTGAGCGTGTGCGAGTGTCGACAAAGCAGCTCGAAGACGACCTCACC
AACAAGGGCGCGCCGCCGGGCTTGAATGGATTGGTGAAAGGTTTGATAAA
AAACTACAAGCTGGATGAAAGTCTGCGACAGGGAGTTATGTACATCGAAT
CGTCGGGCGATCGGAGAACAGCGGACTCCGCTGGCAGAGAAGCGCTGGAA
TACCTCGCGCAGACTGCCGAGTACTTTCCACCAGAACTGGACGAAAGCTC
GAAGACGACCTCACCAACAAGGGCGCGCCGCCGGGCTTGAATGGATTGGT
GAAAGGTTTGATAAAAAACTACAAGCTGGATGAAAGTCTGCGACAGGGAG
TTATGTACATCGAATCGTCGGGCGATCGGAGAACAGCGGACTCCGCTGGC
AGAGAAGCGCTGGAATACCTCGCGCAGACTGCCGAGTACTTTCCACCAGA
ACTGGACGAAAGGACCGGAATGGCGAAGGTGATGAACGCCGAGGCGCTAG
AGTTCACTGTGAATGCACTGGGCGCGACACGGGCGAAGCTCGATTTGTAT
CTATCCAAGATTCCGCCAGATGCGCTGCGAGAGGCCAGGGCAGAACTCAA
GGCTGAGGGGGGAGATTGAGACCGGAATGGCGAAGGTGATGAACGCCGAG
GCGCTAGAGTTCACTGTGAATGCACTGGGCGCGACACGGGCGAAGCTCGA
TTTGTATCTATCCAAGATTCCGCCAGATGCGCTGCGAGAGGCCAGGGCAG
AACTCAAGGCTGAGGGGGGAGATTGA
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