mRNA_H-paniculata_contig6007.13679.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6007.13679.1
Unique NamemRNA_H-paniculata_contig6007.13679.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 6.150e-28
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFKNPTPFLRTREFLWQEGHTAHASFE+AD+MV+QAL+LYRRVYEELLAVPVIMG
Sbjct:  547 RWEFKNPTPFLRTREFLWQEGHTAHASFEDADKMVIQALELYRRVYEELLAVPVIMG 603
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: B8LCI1_THAPS (Proline--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCI1_THAPS)

HSP 1 Score: 109 bits (272), Expect = 1.300e-26
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK+PTPFLRTREFLWQEGHTAHAS+E+AD MVMQALDLYRRVYEELLA+PVI G
Sbjct:  167 RWEFKDPTPFLRTREFLWQEGHTAHASYEDADVMVMQALDLYRRVYEELLAIPVIPG 223
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: A0A6T8LU20_9STRA (Proline--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8LU20_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.050e-26
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK+PTPFLR+REFLWQEGHTAHA+F+EA+EMVMQALDLYRRVYEELLAVPVI G
Sbjct:  193 RWEFKDPTPFLRSREFLWQEGHTAHATFDEANEMVMQALDLYRRVYEELLAVPVIPG 249
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: A0A7S3XY27_HETAK (Proline--tRNA ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY27_HETAK)

HSP 1 Score: 105 bits (261), Expect = 9.610e-26
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK PTPFLR+REFLWQEGHTAHAS+EEA+EMVMQAL+LYRRVYEELLA PV+ G
Sbjct:  243 RWEFKYPTPFLRSREFLWQEGHTAHASYEEANEMVMQALELYRRVYEELLACPVVPG 299
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: A0A835YT63_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT63_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.230e-25
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK+PTPFLR+REFLWQEGHTAH +FEEA+EMV Q LDLYRRVYEELLAVPVI G
Sbjct:  552 RWEFKDPTPFLRSREFLWQEGHTAHTTFEEAEEMVFQILDLYRRVYEELLAVPVIKG 608
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: A0A7S3XXY9_HETAK (Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY9_HETAK)

HSP 1 Score: 105 bits (261), Expect = 5.750e-25
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK PTPFLR+REFLWQEGHTAHAS+EEA+EMVMQAL+LYRRVYEELLA PV+ G
Sbjct:  366 RWEFKYPTPFLRSREFLWQEGHTAHASYEEANEMVMQALELYRRVYEELLACPVVPG 422
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: A0A7S3P631_9STRA (Proline--tRNA ligase n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P631_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.460e-24
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK PTPFLRTREFLWQEGHTAHA+FEEA++MVMQAL+LYR+VYE+L+AVPV+ G
Sbjct:  625 RWEFKYPTPFLRTREFLWQEGHTAHATFEEAEKMVMQALELYRQVYEDLMAVPVVPG 681
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: A0A7S3L317_9STRA (Proline--tRNA ligase n=3 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L317_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.470e-24
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK PTPFLRTREFLWQEGHTAHA+FEEA++MVMQAL+LYR+VYE+L+AVPV+ G
Sbjct:  625 RWEFKYPTPFLRTREFLWQEGHTAHATFEEAEKMVMQALELYRQVYEDLMAVPVVPG 681
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: K0SBF7_THAOC (Proline--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBF7_THAOC)

HSP 1 Score: 103 bits (256), Expect = 2.190e-24
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK+PTPFLRTREFLWQEGHTAHASF++A+ MV +ALDLYRRVYEELLA+PV+ G
Sbjct:  161 RWEFKDPTPFLRTREFLWQEGHTAHASFDDANVMVRKALDLYRRVYEELLAIPVVPG 217
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BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Match: A0A1E7F2C5_9STRA (Proline--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2C5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.870e-24
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELLAVPVIMG 171
            RWEFK+PTPFLR+REFLWQEGHTAHA+FEEAD MVM ALDLY++VY++LL VPVI G
Sbjct:  127 RWEFKDPTPFLRSREFLWQEGHTAHATFEEADSMVMAALDLYKKVYQDLLCVPVIPG 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6007.13679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW5_ECTSI6.150e-2892.98Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
B8LCI1_THAPS1.300e-2689.47Proline--tRNA ligase (Fragment) n=1 Tax=Thalassios... [more]
A0A6T8LU20_9STRA2.050e-2689.47Proline--tRNA ligase n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3XY27_HETAK9.610e-2685.96Proline--tRNA ligase (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YT63_9STRA4.230e-2585.96Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3XXY9_HETAK5.750e-2585.96Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3P631_9STRA1.460e-2482.46Proline--tRNA ligase n=2 Tax=Amphora coffeiformis ... [more]
A0A7S3L317_9STRA1.470e-2482.46Proline--tRNA ligase n=3 Tax=Amphora coffeiformis ... [more]
K0SBF7_THAOC2.190e-2482.46Proline--tRNA ligase n=1 Tax=Thalassiosira oceanic... [more]
A0A1E7F2C5_9STRA6.870e-2480.70Proline--tRNA ligase n=1 Tax=Fragilariopsis cylind... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6007contigH-paniculata_contig6007:11768..11938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue7.9e-24
Seed eggNOG ortholog2880.D8LNW5
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930667.816479-CDS-H-paniculata_contig6007:11767..119381622930667.816479-CDS-H-paniculata_contig6007:11767..11938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6007 11768..11938 -
1691481397.9489949-CDS-H-paniculata_contig6007:11767..119381691481397.9489949-CDS-H-paniculata_contig6007:11767..11938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6007 11768..11938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6007.13679.1prot_H-paniculata_contig6007.13679.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6007 11768..11938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6007.13679.1

>prot_H-paniculata_contig6007.13679.1 ID=prot_H-paniculata_contig6007.13679.1|Name=mRNA_H-paniculata_contig6007.13679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
RWEFKNPTPFLRTREFLWQEGHTAHASFEEADEMVMQALDLYRRVYEELL
AVPVIMG
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mRNA from alignment at H-paniculata_contig6007:11768..11938-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6007.13679.1 ID=mRNA_H-paniculata_contig6007.13679.1|Name=mRNA_H-paniculata_contig6007.13679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig6007:11768..11938- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGAGTTTAAGAACCCTACTCCTTTTTTAAGGACAAGGGAATTTTT
GTGGCAGGAAGGGCACACGGCGCACGCAAGCTTTGAGGAAGCTGATGAGA
TGGTAATGCAGGCCCTTGACCTGTACCGGAGAGTCTACGAAGAGCTTCTG
GCGGTCCCTGTAATCATGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig6007:11768..11938-

>mRNA_H-paniculata_contig6007.13679.1 ID=mRNA_H-paniculata_contig6007.13679.1|Name=mRNA_H-paniculata_contig6007.13679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig6007:11768..11938- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGAGTTTAAGAACCCTACTCCTTTTTTAAGGACAAGGGAATTTTT
GTGGCAGGAAGGGCACACGGCGCACGCAAGCTTTGAGGAAGCTGATGAGA
TGGTAATGCAGGCCCTTGACCTGTACCGGAGAGTCTACGAAGAGCTTCTG
GCGGTCCCTGTAATCATGGGTAGGTGGGAGTTTAAGAACCCTACTCCTTT
TTTAAGGACAAGGGAATTTTTGTGGCAGGAAGGGCACACGGCGCACGCAA
GCTTTGAGGAAGCTGATGAGATGGTAATGCAGGCCCTTGACCTGTACCGG
AGAGTCTACGAAGAGCTTCTGGCGGTCCCTGTAATCATGGGT
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