mRNA_H-paniculata_contig60067.13678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60067.13678.1
Unique NamemRNA_H-paniculata_contig60067.13678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5JAY3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.770e-22
Identity = 43/102 (42.16%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLPKFL 306
            DV++R +EVYL++++ E   ++  Y  ++    G R +++R D+GG+ T  E + +C E+AIK EFA TNTPQ++ +SERDG+TLA + R +L+D   PK +
Sbjct:   76 DVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHM 176
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BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.380e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLPKFL 306
            D + +W EV+L+K K   VD++  + + +  P  LR + +R D+GG+YTS  F K+C +  IK  FA TNTPQ++  +ER GRTLA +VRC+L DS LP FL
Sbjct:  353 DQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFL 454
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.860e-22
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLP 297
            D Y++ KEVYL++ K +  ++V  Y   +    G R + IR D+GG+ T  EF+ +C  +AIK E+A TNTPQQ+ +SE DG+TLA + RC+L+D   P
Sbjct:  132 DDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLAGVTRCLLKDGDFP 230
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 7.800e-22
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLPKFL 306
            D YSR   VYLI+ K+EA+D++  +++ + IP G R + +R+D GG+YT+  + KFC    I  EF    TPQQ  ISER GRTL  IVRC+L   +LP++L
Sbjct:  555 DEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYL 656
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.010e-21
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLPKFL 306
            D YSR   VYLI++K+EA++++  +++ + IP G R + +R+D GG+YTS  ++ FC    I  EF    TPQQ  ISER GRTL  IVRC++   +LP+FL
Sbjct:   73 DEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFL 174
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-21
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLP 297
            D Y++ KEVYL++ K +  ++V  Y   +    G R + IR D+GG+ T  EF+ +C  +AIK E+A TNTPQQ+ +SERDG+TLA + RC+L+D   P
Sbjct:  456 DDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFP 554
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.420e-21
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLP 297
            D Y++ KEVYL++ K +  ++V  Y   +    G R + IR D+GG+ T  EF+ +C  +AIK E+A TNTPQQ+ +SERDG+TLA + RC+L+D   P
Sbjct:  132 DDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFP 230
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.430e-21
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLP 297
            D Y++ KEVYL++ K +  ++V  Y   +    G R + IR D+GG+ T  EF+ +C  +AIK E+A TNTPQQ+ +SERDG+TLA + RC+L+D   P
Sbjct:  328 DDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFP 426
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.440e-21
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLP 297
            D Y++ KEVYL++ K +  ++V  Y   +    G R + IR D+GG+ T  EF+ +C  +AIK E+A TNTPQQ+ +SERDG+TLA + RC+L+D   P
Sbjct:  132 DDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFP 230
[Close]
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.450e-21
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTSGEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLP 297
            D Y++ KEVYL++ K +  ++V  Y   +    G R + IR D+GG+ T  EF+ +C  +AIK E+A TNTPQQ+ +SERDG+TLA + RC+L+D   P
Sbjct:  132 DDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFP 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60067.13678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAY3_9PHAE2.770e-2242.16Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K1J1_9PHAE4.380e-2247.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ34_9PHAE5.860e-2244.44Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KY84_9PHAE7.800e-2247.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE1.010e-2146.08Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVF6_9PHAE1.380e-2145.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE1.420e-2145.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE1.430e-2145.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE1.440e-2145.45Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE1.450e-2145.45Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60067contigH-paniculata_contig60067:144..452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score83.6
Seed ortholog evalue6e-14
Seed eggNOG ortholog6334.EFV62430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930667.7727127-CDS-H-paniculata_contig60067:143..4521622930667.7727127-CDS-H-paniculata_contig60067:143..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60067 144..452 -
1691481397.9366395-CDS-H-paniculata_contig60067:143..4521691481397.9366395-CDS-H-paniculata_contig60067:143..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60067 144..452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60067.13678.1prot_H-paniculata_contig60067.13678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60067 144..452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60067.13678.1

>prot_H-paniculata_contig60067.13678.1 ID=prot_H-paniculata_contig60067.13678.1|Name=mRNA_H-paniculata_contig60067.13678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
DVYSRWKEVYLIKNKEEAVDSVVEYVEKMGIPMGLRAKIIRTDRGGDYTS
GEFKKFCDETAIKHEFAYTNTPQQVEISERDGRTLAVIVRCMLQDSRLPK
FL*
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mRNA from alignment at H-paniculata_contig60067:144..452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60067.13678.1 ID=mRNA_H-paniculata_contig60067.13678.1|Name=mRNA_H-paniculata_contig60067.13678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig60067:144..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTTTACAGCAGATGGAAGGAGGTCTACCTCATCAAGAACAAGGAGGA
AGCAGTGGACTCGGTGGTGGAATACGTTGAGAAAATGGGTATCCCCATGG
GACTACGGGCGAAAATCATCAGAACAGACCGAGGCGGGGACTACACCTCA
GGAGAGTTCAAGAAATTCTGCGACGAGACAGCGATCAAGCATGAGTTCGC
CTACACCAACACGCCACAGCAAGTCGAAATCTCGGAGCGCGACGGGAGGA
CGCTGGCTGTAATCGTGCGGTGCATGCTCCAGGACAGCAGGCTACCGAAA
TTCCTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig60067:144..452-

>mRNA_H-paniculata_contig60067.13678.1 ID=mRNA_H-paniculata_contig60067.13678.1|Name=mRNA_H-paniculata_contig60067.13678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig60067:144..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTTTACAGCAGATGGAAGGAGGTCTACCTCATCAAGAACAAGGAGGA
AGCAGTGGACTCGGTGGTGGAATACGTTGAGAAAATGGGTATCCCCATGG
GACTACGGGCGAAAATCATCAGAACAGACCGAGGCGGGGACTACACCTCA
GGAGAGTTCAAGAAATTCTGCGACGAGACAGCGATCAAGCATGAGTTCGC
CTACACCAACACGCCACAGCAAGTCGAAATCTCGGAGCGCGACGGGAGGA
CGCTGGCTGTAATCGTGCGGTGCATGCTCCAGGACAGCAGGCTACCGAAA
TTCCTTTGAGACGTTTACAGCAGATGGAAGGAGGTCTACCTCATCAAGAA
CAAGGAGGAAGCAGTGGACTCGGTGGTGGAATACGTTGAGAAAATGGGTA
TCCCCATGGGACTACGGGCGAAAATCATCAGAACAGACCGAGGCGGGGAC
TACACCTCAGGAGAGTTCAAGAAATTCTGCGACGAGACAGCGATCAAGCA
TGAGTTCGCCTACACCAACACGCCACAGCAAGTCGAAATCTCGGAGCGCG
ACGGGAGGACGCTGGCTGTAATCGTGCGGTGCATGCTCCAGGACAGCAGG
CTACCGAAATTCCTTTGA
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