mRNA_H-paniculata_contig60028.13674.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60028.13674.1
Unique NamemRNA_H-paniculata_contig60028.13674.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.360e-10
Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNGSDLLCRKIRKLVFL 342
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  +  +G++V  ++    I   + +    +K+ K   L
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGKAYML 374          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.650e-9
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 258
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  +  +GL V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.050e-9
Identity = 34/102 (33.33%), Postives = 54/102 (52.94%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRG-EIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNGS 303
            W+ DSGA+AHMT        +E     ++T+A+G+   I G G  ++   D   E+ +  +S V +VPGL TNL S++ +  + L V    +G  I  P G+
Sbjct:  275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.210e-9
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLT 255
            W+ DSGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G + + + +   I    +  V ++PGLD  L S+  +  +GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.580e-9
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
            W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+  +  +G++V  +     I
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVI 337          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.940e-8
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S++ +  +G++V  +++   I
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTI 358          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.830e-8
Identity = 33/96 (34.38%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  +  +G++V  +++   I
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTI 334          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.280e-8
Identity = 30/97 (30.93%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIA 288
            W+ DSGAT HMTP  + +++Y T  ++++V +A+G+ + + G G + +   D   I    +  V HVPG D  L S+  + ++G++V  +     I+
Sbjct:  169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSVGKLADRGMSVEFQRNSCVIS 262          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A3IEW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IEW9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.460e-8
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
            W+ DSGAT HMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  + ++G++V  +++   I
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358          
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Match: A0A6A3KTF1_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KTF1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.630e-8
Identity = 32/96 (33.33%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAI 285
            W+ DSGAT HMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  + ++G++V  +++   I
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60028.13674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329SN38_9STRA6.360e-1032.17Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA5.650e-939.08CCHC-type domain-containing protein n=1 Tax=Perono... [more]
Q967L5_AEDAE6.050e-933.33Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A2P4XNP3_9STRA8.210e-939.53Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A225UGS0_9STRA9.580e-933.33Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3X5U6_9STRA1.940e-834.38CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA2.830e-834.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A225V0K2_9STRA9.280e-830.93Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3IEW9_9STRA9.460e-833.33Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KTF1_9STRA9.630e-833.33Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60028contigH-paniculata_contig60028:129..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930667.5280437-CDS-H-paniculata_contig60028:128..4431622930667.5280437-CDS-H-paniculata_contig60028:128..443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60028 129..443 -
1691481397.8571568-CDS-H-paniculata_contig60028:128..4431691481397.8571568-CDS-H-paniculata_contig60028:128..443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60028 129..443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930667.546797-UTR-H-paniculata_contig60028:443..4731622930667.546797-UTR-H-paniculata_contig60028:443..473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60028 444..473 -
1691481397.868494-UTR-H-paniculata_contig60028:443..4731691481397.868494-UTR-H-paniculata_contig60028:443..473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60028 444..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60028.13674.1prot_H-paniculata_contig60028.13674.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60028 129..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60028.13674.1

>prot_H-paniculata_contig60028.13674.1 ID=prot_H-paniculata_contig60028.13674.1|Name=mRNA_H-paniculata_contig60028.13674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSL
SRVAHVPGLDTNLFSLQIVVNQGLTVCLKEEGAAIALPNGSDLLCRKIRK
LVFLG
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mRNA from alignment at H-paniculata_contig60028:129..473-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60028.13674.1 ID=mRNA_H-paniculata_contig60028.13674.1|Name=mRNA_H-paniculata_contig60028.13674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig60028:129..473- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATT AATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACG GCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAA GATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCACATGTTCC GGGCCTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAGGGAC TTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAATGGG AGCGATCTTTTGTGCAGAAAAATCCGTAAACTTGTCTTTTTGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig60028:129..473-

>mRNA_H-paniculata_contig60028.13674.1 ID=mRNA_H-paniculata_contig60028.13674.1|Name=mRNA_H-paniculata_contig60028.13674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig60028:129..473- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCCGTCTAACGAATTAATGTTTGATTACGAAACCTGCAGTAATTT
GTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTA
AGATGTTGGTATGGACGAAAGATCGGGGCGAGATACACAAATTCAGCTTG
AGTCGTGTAGCACATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACA
GATTGTAGTGAACCAGGGACTTACTGTCTGTTTGAAGGAGGAGGGTGCAG
CAATTGCACTACCTAATGGGAGCGATCTTTTGTGCAGAAAAATCCGTAAA
CTTGTCTTTTTGGGAATGACTCCGTCTAACGAATTAATGTTTGATTACGA
AACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGA
TTGAGGGATATGGTAAGATGTTGGTATGGACGAAAGATCGGGGCGAGATA
CACAAATTCAGCTTGAGTCGTGTAGCACATGTTCCGGGCCTGGACACAAA
TTTGTTTTCCCTACAGATTGTAGTGAACCAGGGACTTACTGTCTGTTTGA
AGGAGGAGGGTGCAGCAATTGCACTACCTAATGGGAGCGATCTTTTGTGC
AGAAAAATCCGTAAACTTGTCTTTTTGGGA
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