prot_H-paniculata_contig6.13664.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6.13664.1
Unique Nameprot_H-paniculata_contig6.13664.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length176
Homology
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A6H5GPC7_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GPC7_9HEMI)

HSP 1 Score: 112 bits (279), Expect = 2.000e-25
Identity = 71/226 (31.42%), Postives = 106/226 (46.90%), Query Frame = 0
Query:    1 MSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDI----------------------PLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYF-----------SRYGG-----------------------KSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            +S+L  + +LA +HD E+  MDV+ AYLN  +EE +F++ P        DI                        V  L+KSLY +KQSGR W   LD+ L  +G++ ++ D C+Y            ++Y                         K+DG  L G+VD+DW     DR+S +  +F ++  AISW +RK +    SST AEY+   EA KE +YL+
Sbjct:  444 LSSLHMIMALAVQHDMEIIQMDVETAYLNGELEETIFMEAPECLEEILNDIVKEEKGKIKDSAEKMLKHLQTGKTVCRLKKSLYGLKQSGRQWYKKLDEKLKQLGMETTSADPCVYILDKVNYLSQFNTKYDEATWKAAKHVLQYLKGTEDLKLVFKNDGKPLTGYVDSDWGNCPNDRRSYSGCLFNMSGSAISWMARKQRTVALSSTEAEYLGLSEAAKEAVYLK 669          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A0P1ALS5_PLAHL (Gag-pol polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ALS5_PLAHL)

HSP 1 Score: 102 bits (254), Expect = 2.910e-23
Identity = 61/178 (34.27%), Postives = 98/178 (55.06%), Query Frame = 0
Query:    5 RAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGK------------SDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            + + SL+  +D  +  M+V +A+LN  +EE +F+  P  +   S    + + L+KSLY IKQS    N  +DDF++ + L +  T  C++  R   +            S  HGL+G+ DADWA D+E R+S + Y F ++ G ISW S+K +   +SS  AEY+A  +A +E   L+
Sbjct:   88 KVLLSLSAIYDLTVHLMNVKMAFLNGLLEEDIFLVQPDGYVDISHPNDVCK-LKKSLYGIKQSPTMVNQMIDDFMLQLDLKKCETGHCVFTKRTVLEMIFVALYVNFQASSRHGLQGYSDADWAGDIESRRSTSGYAFMMSGGVISWRSKKQRTVTFSSIEAEYIALLKATQEANLLK 264          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A6H5II26_9HYME (Integrase catalytic domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5II26_9HYME)

HSP 1 Score: 105 bits (263), Expect = 3.010e-23
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 0
Query:    3 TLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCL--YFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            ++R + ++A          DV  AYLN+ + E +++++P   +    +  L   L K++Y +KQSGR WN   D F+   G  +S  D     Y   Y  +     L G+ DAD+A D++ R+S T Y F ++ G + W SR+      S+T AEY+AA EA KE ++LR
Sbjct:  834 SIRVLLAIAVRDHLHSAQFDVSTAYLNSELTETIYMRVPDGLNVNKNNAVLK--LNKAIYGLKQSGRCWNERFDAFIKSAGFKQSNADKSTRNYGIMYDSRGSDKPLVGYSDADYANDIDTRRSTTGYAFMMSAGCVVWASRRQACVSLSTTEAEYIAASEATKEIVWLR 1001          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A8J5Z9N8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z9N8_9ROSI)

HSP 1 Score: 103 bits (257), Expect = 1.700e-22
Identity = 67/198 (33.84%), Postives = 100/198 (50.51%), Query Frame = 0
Query:    2 STLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLE-----------------------------GFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            S+++A+  +   HD ELE +DV  A+L+  +EE ++++ P  F    ++   V  LRKSLY +KQS R W    D F+      RS+ DSC+YF +    SDG  +                              G+V+AD+A D++ R+S T YVF +   AISW +        S+T AEY+A  EA KE I+L+
Sbjct:  343 SSIQALLGIVAMHDLELEQLDVKTAFLHGELEEDIYMQQPEGFIVSEKE-DYVFLLRKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSLDSCVYFKK---NSDGSFVYLLLYVDDILIAAKDKGEIRKFGRTKDRVIGYVNADFAGDLDRRRSLTGYVFTIGGCAISWKATLQTTVALSTTEAEYMAITEACKEAIWLK 536          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A2N9HKJ8_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HKJ8_FAGSY)

HSP 1 Score: 100 bits (248), Expect = 2.870e-21
Identity = 67/186 (36.02%), Postives = 104/186 (55.91%), Query Frame = 0
Query:    2 STLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFS-PFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLD----------------RSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            +++RAV +L    D ELE +DV  A+L+ ++EE +F+  P  F  P +++  LV  L+KSLY +KQS R W  + +  L G   +                + TT+  + FSR  G +    + G+VDAD+A +V+D++S T YVF L+ G I W S    +   S+T AEY+A  EA KE ++L+
Sbjct:  494 TSIRAVLALVANQDLELEQLDVKTAFLHGNLEEEIFMVQPERFKQPGTQN--LVCRLKKSLYGLKQSPRQWYKS-EYLLAGTWRNPGREHWNAVKWIFRYLKGTTEHEILFSRQLGTNS---VVGYVDADYACEVDDKRSTTDYVFTLSRGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLK 673          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A3S1AFJ4_ELYCH (Integrase catalytic domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1AFJ4_ELYCH)

HSP 1 Score: 99.4 bits (246), Expect = 5.650e-21
Identity = 68/172 (39.53%), Postives = 96/172 (55.81%), Query Frame = 0
Query:    1 MSTLRAVFSLATEHDFELEGMDVDVAYLNASVE-ELFVKLPSEFSPFS-RDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKL-NDGA-ISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYL 168
            ++++R +  LA +++  +  MDV  AYLNA ++ ELFV+ P  +   + +    V  L+KSLY +KQSGRNWN+ L   L+  G  ++T D  L F +     D   L  F D+DW     DRKS T Y F L NDG  ISW S++ Q    SS  AEY+A   A +E  +L
Sbjct:  719 ITSVRTLIQLAVQNNQIVHQMDVKTAYLNAPIDCELFVEQPEGYVKTNEKGEKYVWKLKKSLYGLKQSGRNWNHLLHKHLIDDGYLKATMDQKLIFRK---SVDSLNLTSFCDSDWGNSG-DRKSITGYCFTLSNDGPLISWKSKRQQSVALSSCEAEYMAMSSATQEGKFL 886          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A2N9J3U8_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J3U8_FAGSY)

HSP 1 Score: 99.0 bits (245), Expect = 7.090e-21
Identity = 59/169 (34.91%), Postives = 91/169 (53.85%), Query Frame = 0
Query:    2 STLRAVFSLATEHDFELEGMDVDVAYLNAS-VEELFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            +T+RA+ ++A  + +EL  MDV+ A+LN   +E +++  PS F   S+   + R LRK++Y +KQ+   W   L + ++ +G   S  DS L+                 DADWA +V+DR S +AY+  L    ISW S+K +    SST AEY A   A  ET +L+
Sbjct:  372 ATIRAIMTIAVMNGWELRQMDVNNAFLNGELIETVYMMQPSGFKDLSKPTHVCR-LRKAIYGLKQAPLAWYTALKNAILQLGFHNSKADSSLFIYSQ-------------DADWAGNVDDRTSTSAYISFLGSTPISWSSKKQRAVVRSSTEAEYRALANAASETTWLQ 526          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A8J5Y6U9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6U9_9ROSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.440e-20
Identity = 66/213 (30.99%), Postives = 98/213 (46.01%), Query Frame = 0
Query:    2 STLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLE--------------------------------------------GFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            S++RA+  +   HD ELE +DV   +L+   EE ++++ P  F    ++   V  L+KSLY +KQS R W    D F+      RS+ D+C+YF +    SD   +E                                            G+VDAD+A D++ R+S T YVF +   AISW +        S+T AEY+A  EA KE I+L+
Sbjct:  485 SSIRALLGIVAMHDLELEQLDVKTTFLHREFEEDIYMQQPEGFIVSEKE-DYVCLLKKSLYSLKQSPRQWYKRFDSFITSHDFKRSSFDNCIYFKK---NSDDDEIEYMSHVPYSSAVGSLMYAIQIYHMQSVQLADIWRIPFGRTEDRVIGYVDADFAGDLDRRRSLTRYVFTIGGCAISWKATLQTTVTLSTTEAEYMAITEACKEAIWLK 693          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: H3H956_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H956_PHYRM)

HSP 1 Score: 95.9 bits (237), Expect = 8.770e-20
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 0
Query:    2 STLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRC-LRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLRI 170
            +++R V SLA ++  +L  MDV  A+LN  ++E +++  P  +     D P   C L++SLY +KQS R +         GI    S  D               GL+G+ DADWA D+E R+S + Y F +N G ISW S+K +    SST AEY+A  EA +E ++L++
Sbjct:  394 TSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMYIQGTKTH--GIEFQASCHD---------------GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKV 545          
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A2N9G4M2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G4M2_FAGSY)

HSP 1 Score: 92.4 bits (228), Expect = 1.480e-18
Identity = 70/253 (27.67%), Postives = 104/253 (41.11%), Query Frame = 0
Query:    2 STLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFS-------------------------------------------------------------------------RYGGKSDGHGL-----------EGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 169
            +++RAV +L  + D ELE +DV  A+L+ ++EE +F++ P  F     +  LV  L+KSLY +KQS R W    D +++ IG  R   D C+Y                                                                           RY   +  HG+            G+VDAD+A +V+DR+S T YVF L+ G I W S    +   S+T AEY+A  EA KE ++L+
Sbjct:  775 TSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTE-NLVCRLKKSLYGLKQSPRQWYKRFDSYMIQIGYTRCEYDCCVYVRILEDGSYIFLLLYVDDMLIAAKSMCERTEGQESCGCLRKTTSGRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLK 1026          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GPC7_9HEMI2.000e-2531.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A0P1ALS5_PLAHL2.910e-2334.27Gag-pol polyprotein n=1 Tax=Plasmopara halstedii T... [more]
A0A6H5II26_9HYME3.010e-2333.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5Z9N8_9ROSI1.700e-2233.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HKJ8_FAGSY2.870e-2136.02CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A3S1AFJ4_ELYCH5.650e-2139.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9J3U8_FAGSY7.090e-2134.91CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A8J5Y6U9_9ROSI3.440e-2030.99Integrase catalytic domain-containing protein n=1 ... [more]
H3H956_PHYRM8.770e-2035.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9G4M2_FAGSY1.480e-1827.67Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..98
e-value: 1.1E-14
score: 54.7
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 96..168
NoneNo IPR availablePANTHERPTHR11439:SF242coord: 96..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6contigH-paniculata_contig6:93759..94286 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6.13664.1mRNA_H-paniculata_contig6.13664.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6 93759..94491 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6.13664.1 ID=prot_H-paniculata_contig6.13664.1|Name=mRNA_H-paniculata_contig6.13664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MSTLRAVFSLATEHDFELEGMDVDVAYLNASVEELFVKLPSEFSPFSRDI
PLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGK
SDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSS
TAAEYVAAGEAGKETIYLRIDRLRM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like