mRNA_H-paniculata_contig6.13664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A6H5GPC7_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GPC7_9HEMI) HSP 1 Score: 118 bits (296), Expect = 8.580e-27 Identity = 74/230 (32.17%), Postives = 110/230 (47.83%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDI----------------------PLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYF-----------SRYGG-----------------------KSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PV+R+S+L + +LA +HD E+ MDV+ AYLN +EE +F++ P DI V L+KSLY +KQSGR W LD+ L +G++ ++ D C+Y ++Y K+DG L G+VD+DW DR+S + +F ++ AISW +RK + SST AEY+ EA KE +YL+
Sbjct: 440 PVSRLSSLHMIMALAVQHDMEIIQMDVETAYLNGELEETIFMEAPECLEEILNDIVKEEKGKIKDSAEKMLKHLQTGKTVCRLKKSLYGLKQSGRQWYKKLDEKLKQLGMETTSADPCVYILDKVNYLSQFNTKYDEATWKAAKHVLQYLKGTEDLKLVFKNDGKPLTGYVDSDWGNCPNDRRSYSGCLFNMSGSAISWMARKQRTVALSSTEAEYLGLSEAAKEAVYLK 669
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A0P1ALS5_PLAHL (Gag-pol polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ALS5_PLAHL) HSP 1 Score: 108 bits (271), Expect = 6.850e-25 Identity = 64/186 (34.41%), Postives = 104/186 (55.91%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGK------------SDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PVA+ ++ + + SL+ +D + M+V +A+LN +EE +F+ P + S + + L+KSLY IKQS N +DDF++ + L + T C++ R + S HGL+G+ DADWA D+E R+S + Y F ++ G ISW S+K + +SS AEY+A +A +E L+
Sbjct: 80 PVAKFASSKVLLSLSAIYDLTVHLMNVKMAFLNGLLEEDIFLVQPDGYVDISHPNDVCK-LKKSLYGIKQSPTMVNQMIDDFMLQLDLKKCETGHCVFTKRTVLEMIFVALYVNFQASSRHGLQGYSDADWAGDIESRRSTSGYAFMMSGGVISWRSKKQRTVTFSSIEAEYIALLKATQEANLLK 264
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A6H5II26_9HYME (Integrase catalytic domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5II26_9HYME) HSP 1 Score: 112 bits (279), Expect = 1.780e-24 Identity = 60/176 (34.09%), Postives = 93/176 (52.84%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCL--YFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PV R ++R + ++A DV AYLN+ + E +++++P + + L L K++Y +KQSGR WN D F+ G +S D Y Y + L G+ DAD+A D++ R+S T Y F ++ G + W SR+ S+T AEY+AA EA KE ++LR
Sbjct: 828 PVVRFESIRVLLAIAVRDHLHSAQFDVSTAYLNSELTETIYMRVPDGLNVNKNNAVLK--LNKAIYGLKQSGRCWNERFDAFIKSAGFKQSNADKSTRNYGIMYDSRGSDKPLVGYSDADYANDIDTRRSTTGYAFMMSAGCVVWASRRQACVSLSTTEAEYIAASEATKEIVWLR 1001
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A8J5Z9N8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z9N8_9ROSI) HSP 1 Score: 107 bits (268), Expect = 4.220e-23 Identity = 69/203 (33.99%), Postives = 103/203 (50.74%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLE-----------------------------GFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PV + S+++A+ + HD ELE +DV A+L+ +EE ++++ P F ++ V LRKSLY +KQS R W D F+ RS+ DSC+YF + SDG + G+V+AD+A D++ R+S T YVF + AISW + S+T AEY+A EA KE I+L+
Sbjct: 338 PVVKHSSIQALLGIVAMHDLELEQLDVKTAFLHGELEEDIYMQQPEGFIVSEKE-DYVFLLRKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSLDSCVYFKK---NSDGSFVYLLLYVDDILIAAKDKGEIRKFGRTKDRVIGYVNADFAGDLDRRRSLTGYVFTIGGCAISWKATLQTTVALSTTEAEYMAITEACKEAIWLK 536
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A2N9HKJ8_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HKJ8_FAGSY) HSP 1 Score: 105 bits (262), Expect = 2.840e-22 Identity = 70/191 (36.65%), Postives = 107/191 (56.02%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFS-PFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLD----------------RSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PV R +++RAV +L D ELE +DV A+L+ ++EE +F+ P F P +++ LV L+KSLY +KQS R W + + L G + + TT+ + FSR G + + G+VDAD+A +V+D++S T YVF L+ G I W S + S+T AEY+A EA KE ++L+
Sbjct: 489 PVVRHTSIRAVLALVANQDLELEQLDVKTAFLHGNLEEEIFMVQPERFKQPGTQN--LVCRLKKSLYGLKQSPRQWYKS-EYLLAGTWRNPGREHWNAVKWIFRYLKGTTEHEILFSRQLGTNS---VVGYVDADYACEVDDKRSTTDYVFTLSRGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLK 673
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A3S1AFJ4_ELYCH (Integrase catalytic domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1AFJ4_ELYCH) HSP 1 Score: 105 bits (262), Expect = 3.150e-22 Identity = 71/176 (40.34%), Postives = 99/176 (56.25%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVE-ELFVKLPSEFSPFS-RDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKL-NDGA-ISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYL 709
P AR++++R + LA +++ + MDV AYLNA ++ ELFV+ P + + + V L+KSLY +KQSGRNWN+ L L+ G ++T D L F + D L F D+DW DRKS T Y F L NDG ISW S++ Q SS AEY+A A +E +L
Sbjct: 715 PTARITSVRTLIQLAVQNNQIVHQMDVKTAYLNAPIDCELFVEQPEGYVKTNEKGEKYVWKLKKSLYGLKQSGRNWNHLLHKHLIDDGYLKATMDQKLIFRK---SVDSLNLTSFCDSDWGNSG-DRKSITGYCFTLSNDGPLISWKSKRQQSVALSSCEAEYMAMSSATQEGKFL 886
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A2N9J3U8_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J3U8_FAGSY) HSP 1 Score: 103 bits (256), Expect = 1.720e-21 Identity = 61/174 (35.06%), Postives = 94/174 (54.02%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNAS-VEELFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PV + +T+RA+ ++A + +EL MDV+ A+LN +E +++ PS F S+ + R LRK++Y +KQ+ W L + ++ +G S DS L+ DADWA +V+DR S +AY+ L ISW S+K + SST AEY A A ET +L+
Sbjct: 367 PVVKPATIRAIMTIAVMNGWELRQMDVNNAFLNGELIETVYMMQPSGFKDLSKPTHVCR-LRKAIYGLKQAPLAWYTALKNAILQLGFHNSKADSSLFIYSQ-------------DADWAGNVDDRTSTSAYISFLGSTPISWSSKKQRAVVRSSTEAEYRALANAASETTWLQ 526
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: H3H956_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H956_PHYRM) HSP 1 Score: 102 bits (254), Expect = 3.430e-21 Identity = 64/176 (36.36%), Postives = 96/176 (54.55%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRC-LRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLEGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLRI 715
PVA+ +++R V SLA ++ +L MDV A+LN ++E +++ P + D P C L++SLY +KQS R + GI S D GL+G+ DADWA D+E R+S + Y F +N G ISW S+K + SST AEY+A EA +E ++L++
Sbjct: 389 PVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMYIQGTKTH--GIEFQASCHD---------------GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKV 545
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A8J5Y6U9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6U9_9ROSI) HSP 1 Score: 101 bits (251), Expect = 8.430e-21 Identity = 68/218 (31.19%), Postives = 101/218 (46.33%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFSRYGGKSDGHGLE--------------------------------------------GFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PV + S++RA+ + HD ELE +DV +L+ EE ++++ P F ++ V L+KSLY +KQS R W D F+ RS+ D+C+YF + SD +E G+VDAD+A D++ R+S T YVF + AISW + S+T AEY+A EA KE I+L+
Sbjct: 480 PVVKHSSIRALLGIVAMHDLELEQLDVKTTFLHREFEEDIYMQQPEGFIVSEKE-DYVCLLKKSLYSLKQSPRQWYKRFDSFITSHDFKRSSFDNCIYFKK---NSDDDEIEYMSHVPYSSAVGSLMYAIQIYHMQSVQLADIWRIPFGRTEDRVIGYVDADFAGDLDRRRSLTRYVFTIGGCAISWKATLQTTVTLSTTEAEYMAITEACKEAIWLK 693
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Match: A0A2N9G4M2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G4M2_FAGSY) HSP 1 Score: 97.8 bits (242), Expect = 1.450e-19 Identity = 73/258 (28.29%), Postives = 107/258 (41.47%), Query Frame = 2
Query: 194 PVARMSTLRAVFSLATEHDFELEGMDVDVAYLNASVEE-LFVKLPSEFSPFSRDIPLVRCLRKSLYDIKQSGRNWNNTLDDFLVGIGLDRSTTDSCLYFS-------------------------------------------------------------------------RYGGKSDGHGL-----------EGFVDADWAEDVEDRKSPTAYVFKLNDGAISWCSRKGQLRPWSSTAAEYVAAGEAGKETIYLR 712
PV R +++RAV +L + D ELE +DV A+L+ ++EE +F++ P F + LV L+KSLY +KQS R W D +++ IG R D C+Y RY + HG+ G+VDAD+A +V+DR+S T YVF L+ G I W S + S+T AEY+A EA KE ++L+
Sbjct: 770 PVVRHTSIRAVLALVADQDLELEQLDVKTAFLHGNLEEEIFMEQPEGFKQPGTE-NLVCRLKKSLYGLKQSPRQWYKRFDSYMIQIGYTRCEYDCCVYVRILEDGSYIFLLLYVDDMLIAAKSMCERTEGQESCGCLRKTTSGRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLK 1026 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6.13664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6.13664.1 >prot_H-paniculata_contig6.13664.1 ID=prot_H-paniculata_contig6.13664.1|Name=mRNA_H-paniculata_contig6.13664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp MSTLRAVFSLATEHDFELEGMDVDVAYLNASVEELFVKLPSEFSPFSRDIback to top mRNA from alignment at H-paniculata_contig6:93759..94491- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6.13664.1 ID=mRNA_H-paniculata_contig6.13664.1|Name=mRNA_H-paniculata_contig6.13664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at H-paniculata_contig6:93759..94491- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6:93759..94491- >mRNA_H-paniculata_contig6.13664.1 ID=mRNA_H-paniculata_contig6.13664.1|Name=mRNA_H-paniculata_contig6.13664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig6:93759..94491- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |