prot_H-paniculata_contig59998.13660.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig59998.13660.1
Unique Name	prot_H-paniculata_contig59998.13660.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	112

Homology

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.230e-31
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            KGR+V  GW ++P  DC  T+APVCR  SIRM+  IA ++NLE  Q+D +T FL AD+ E VFV+  P +E  D++G  +V+ L KS YGL QSPSNW+ TID  L EIGF
Sbjct:  521 KGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGF 631

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.580e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL AD++EEVFV+  P +E  D++G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct:  192 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGF 302

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.900e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL AD++EEVFV+  P +E  D++G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct: 1213 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGF 1323

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.910e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL AD++EEVFV+  P +E  D++G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct: 1378 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGF 1488

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.900e-30
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEI 109
            KGR+V  GW ++P  DC  T+APVCRL SIRM+  IA ++NLE  Q+D +T FL AD+ E VFV+  P +E  D++G  +V+ L KS YGL QSPSNW+ TID  L EI
Sbjct:  898 KGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEI 1006

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.030e-29
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            KGR+VV GW ++P  D   TFAPVCRL SIRM+   A ++NLE  Q+D +T FL AD+ E VFV+  P +E  +++G  +V+ L KS YGL QSPSNW+ TID  L EIGF
Sbjct:  112 KGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGF 222

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.170e-29
Identity = 61/111 (54.95%), Postives = 73/111 (65.77%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            K R+V  GW ++P  DC GTFAPVCRL SIRMV  IA E +L+  QLD  T FL AD+EE VFV+M P YE  +     +V+ L KS  GL QSP +W +TID  L EIGF
Sbjct:  364 KARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGF 474

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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.070e-29
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL  D+ EEVFV+  P +E  D++G  +V+ L +S YGL QSP NW+ TID  L EIGF
Sbjct:  994 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGF 1104

[Close]

BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.550e-29
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 0

Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            KGR+V  GW ++P  DC  T+APVCRL SIRM+  IA ++NLE  Q+D +T FL AD+ E++FV+    +E  D +G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct:  541 KGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRNWFHTIDPFLVEIGF 651

[Close]

BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JWX0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.300e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 0

Query:    8 GWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 111
            GW ++P  DC  T+APVCRL SIRM+  IA ++NLE  Q+D +T  L AD+ E VFV+  P +E  D++G  +V+ L KS YGL QSPSNW+ TID  L EI F
Sbjct:  138 GWNQVPELDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTASLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEISF 241

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KL37_9PHAE	7.230e-31	54.05	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JME8_9PHAE	1.580e-30	53.15	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJH6_9PHAE	1.900e-30	53.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	1.910e-30	53.15	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JIN1_9PHAE	8.900e-30	54.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWT4_9PHAE	2.030e-29	54.05	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L6R7_9PHAE	2.170e-29	54.95	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JYB5_9PHAE	3.070e-29	51.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KER0_9PHAE	5.550e-29	52.25	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JWX0_9PHAE	1.300e-28	52.88	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..112 e-value: 4.5E-25 score: 88.7
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..110
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 3..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig59998	contig	H-paniculata_contig59998:620..955 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig59998.13660.1	mRNA_H-paniculata_contig59998.13660.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig59998 620..955 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig59998.13660.1 ID=prot_H-paniculata_contig59998.13660.1|Name=mRNA_H-paniculata_contig59998.13660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYN
TVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWE
TIDKHLAEIGFK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like