mRNA_H-paniculata_contig59998.13660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59998.13660.1
Unique NamemRNA_H-paniculata_contig59998.13660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.230e-31
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            KGR+V  GW ++P  DC  T+APVCR  SIRM+  IA ++NLE  Q+D +T FL AD+ E VFV+  P +E  D++G  +V+ L KS YGL QSPSNW+ TID  L EIGF
Sbjct:  521 KGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGF 631
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.580e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL AD++EEVFV+  P +E  D++G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct:  192 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGF 302
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.900e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL AD++EEVFV+  P +E  D++G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct: 1213 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGF 1323
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.910e-30
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL AD++EEVFV+  P +E  D++G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct: 1378 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGF 1488
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.900e-30
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEI 327
            KGR+V  GW ++P  DC  T+APVCRL SIRM+  IA ++NLE  Q+D +T FL AD+ E VFV+  P +E  D++G  +V+ L KS YGL QSPSNW+ TID  L EI
Sbjct:  898 KGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEI 1006
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.030e-29
Identity = 60/111 (54.05%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            KGR+VV GW ++P  D   TFAPVCRL SIRM+   A ++NLE  Q+D +T FL AD+ E VFV+  P +E  +++G  +V+ L KS YGL QSPSNW+ TID  L EIGF
Sbjct:  112 KGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGF 222
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.170e-29
Identity = 61/111 (54.95%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            K R+V  GW ++P  DC GTFAPVCRL SIRMV  IA E +L+  QLD  T FL AD+EE VFV+M P YE  +     +V+ L KS  GL QSP +W +TID  L EIGF
Sbjct:  364 KARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGF 474
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.070e-29
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            KGR+V  GW ++P  DC  T+APVCR+ S+RMV  I  E+NL   Q+D +T FL  D+ EEVFV+  P +E  D++G  +V+ L +S YGL QSP NW+ TID  L EIGF
Sbjct:  994 KGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGF 1104
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.550e-29
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:    1 KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            KGR+V  GW ++P  DC  T+APVCRL SIRM+  IA ++NLE  Q+D +T FL AD+ E++FV+    +E  D +G  +V+ L KS YGL QSP NW+ TID  L EIGF
Sbjct:  541 KGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRNWFHTIDPFLVEIGF 651
[Close]
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Match: A0A6H5JWX0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.300e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   22 GWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYNTVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWETIDKHLAEIGF 333
            GW ++P  DC  T+APVCRL SIRM+  IA ++NLE  Q+D +T  L AD+ E VFV+  P +E  D++G  +V+ L KS YGL QSPSNW+ TID  L EI F
Sbjct:  138 GWNQVPELDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTASLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEISF 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59998.13660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL37_9PHAE7.230e-3154.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.580e-3053.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.900e-3053.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.910e-3053.15Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JIN1_9PHAE8.900e-3054.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWT4_9PHAE2.030e-2954.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE2.170e-2954.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYB5_9PHAE3.070e-2951.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KER0_9PHAE5.550e-2952.25CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWX0_9PHAE1.300e-2852.88Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59998contigH-paniculata_contig59998:620..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score95.5
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog36914.XP_001527393.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930663.1030757-CDS-H-paniculata_contig59998:619..9551622930663.1030757-CDS-H-paniculata_contig59998:619..955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59998 620..955 +
1691481395.1702957-CDS-H-paniculata_contig59998:619..9551691481395.1702957-CDS-H-paniculata_contig59998:619..955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59998 620..955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59998.13660.1prot_H-paniculata_contig59998.13660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59998 620..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59998.13660.1

>prot_H-paniculata_contig59998.13660.1 ID=prot_H-paniculata_contig59998.13660.1|Name=mRNA_H-paniculata_contig59998.13660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
KGRIVVLGWGKMPRCDCRGTFAPVCRLHSIRMVLGIATEYNLECWQLDYN
TVFLNADVEEEVFVKMVPEYEDFDENGFPIVITLLKSRYGLRQSPSNWWE
TIDKHLAEIGFK
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mRNA from alignment at H-paniculata_contig59998:620..955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59998.13660.1 ID=mRNA_H-paniculata_contig59998.13660.1|Name=mRNA_H-paniculata_contig59998.13660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig59998:620..955+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGACGCATCGTTGTGCTAGGATGGGGGAAAATGCCCCGCTGTGATTG
CCGCGGGACTTTCGCTCCGGTTTGCAGGCTCCACAGCATCCGCATGGTGC
TGGGGATAGCGACGGAGTACAATCTGGAATGCTGGCAGCTCGACTACAAC
ACCGTATTTCTGAACGCTGACGTCGAGGAGGAGGTGTTCGTTAAGATGGT
ACCAGAGTACGAGGATTTCGACGAAAACGGATTTCCAATTGTAATAACGC
TTCTTAAGAGCCGATATGGTCTTCGCCAGAGTCCATCGAACTGGTGGGAG
ACTATCGACAAACACCTGGCGGAGATCGGTTTCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig59998:620..955+

>mRNA_H-paniculata_contig59998.13660.1 ID=mRNA_H-paniculata_contig59998.13660.1|Name=mRNA_H-paniculata_contig59998.13660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig59998:620..955+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGACGCATCGTTGTGCTAGGATGGGGGAAAATGCCCCGCTGTGATTG
CCGCGGGACTTTCGCTCCGGTTTGCAGGCTCCACAGCATCCGCATGGTGC
TGGGGATAGCGACGGAGTACAATCTGGAATGCTGGCAGCTCGACTACAAC
ACCGTATTTCTGAACGCTGACGTCGAGGAGGAGGTGTTCGTTAAGATGGT
ACCAGAGTACGAGGATTTCGACGAAAACGGATTTCCAATTGTAATAACGC
TTCTTAAGAGCCGATATGGTCTTCGCCAGAGTCCATCGAACTGGTGGGAG
ACTATCGACAAACACCTGGCGGAGATCGGTTTCAAAAAGGGACGCATCGT
TGTGCTAGGATGGGGGAAAATGCCCCGCTGTGATTGCCGCGGGACTTTCG
CTCCGGTTTGCAGGCTCCACAGCATCCGCATGGTGCTGGGGATAGCGACG
GAGTACAATCTGGAATGCTGGCAGCTCGACTACAACACCGTATTTCTGAA
CGCTGACGTCGAGGAGGAGGTGTTCGTTAAGATGGTACCAGAGTACGAGG
ATTTCGACGAAAACGGATTTCCAATTGTAATAACGCTTCTTAAGAGCCGA
TATGGTCTTCGCCAGAGTCCATCGAACTGGTGGGAGACTATCGACAAACA
CCTGGCGGAGATCGGTTTCAAA
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