mRNA_H-paniculata_contig59923.13652.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig59923.13652.1
Unique Name	mRNA_H-paniculata_contig59923.13652.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B771AE9 (uncharacterized protein LOC110737253 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B771AE9)

HSP 1 Score: 84.0 bits (206), Expect = 2.080e-17
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NI+ V QPAQSPDLN+ DLG    ++S  ++     +D LVE V   YN +     + +W  L +   ++LKA GGN ++I H   KK +  G LP  V ++ EV   AVE
Sbjct:  107 GFNIHFVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPKNVDELVEKVIESYNTFKPEVNKYIWVTLQRCMIKILKAEGGNKYKIPHMNKKKLENLGTLPNVVHVQEEVVTEAVE 219

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B783BEB (uncharacterized protein LOC110726018 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B783BEB)

HSP 1 Score: 83.2 bits (204), Expect = 4.160e-17
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NI  V QPAQSPDLN+ DLG    ++S  ++     +D LVE V   YN +     + +W  L +   ++LKA GGN ++I H   KK +  G LP  +++ER +   AVE
Sbjct:  107 GFNIEFVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPKNVDELVEKVIESYNNFKPEVNKYIWVTLQRCMIKILKAEGGNKYKIPHMNKKKLENLGILPNQIEVERSIVVEAVE 219

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B792961 (uncharacterized protein LOC110694345 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B792961)

HSP 1 Score: 83.6 bits (205), Expect = 1.670e-16
Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NI LV QPAQSPDLN+ DLG    ++S  ++     +D LV+ V   YN + A   + +W    +   ++LKA GGN ++I H   KK +  G LP  V++ +EV   AVE
Sbjct:  290 GFNIQLVFQPAQSPDLNVLDLGLFRSMQSLQYQSFPKDLDELVDKVLECYNTFKAQVNKYIWVTFQRCMIKILKAQGGNKYKIPHMNKKKLENLGILPDQVQVRKEVVLDAVE 402

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B780C45 (uncharacterized protein LOC110728627 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B780C45)

HSP 1 Score: 81.3 bits (199), Expect = 2.210e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NI  V QPAQSPDLN+ DLG    ++S  ++     ++ LVE V+  Y+ +N    + +W  L K   ++LK  GGN ++I H   K+ +  G LP  V++++EV   AVE
Sbjct:  107 GFNIQFVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPRDLEELVEKVKQSYDTFNPHVNKYIWVTLQKCMIKILKEEGGNKYKIPHMNKKRLENFGNLPDLVEVQKEVVFEAVE 219

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B781AA8 (uncharacterized protein LOC110734628 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B781AA8)

HSP 1 Score: 81.6 bits (200), Expect = 2.710e-16
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NIN V QPAQSPDLN+ +LG    ++S  ++   + +D LV  V+  Y A+N    + +W  L K   ++LK  GGN +++ H   KK +    LP  V +++E+   AVE
Sbjct:  152 GFNINFVFQPAQSPDLNVLELGLFRSIQSLQYQSFPNNLDELVTRVQESYEAFNPQVNKYIWLTLQKCTIEILKVQGGNKYKLPHMNKKKLENLRQLPNQVAVQKEIVLEAVE 264

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B77CF5C (uncharacterized protein LOC110698865 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B77CF5C)

HSP 1 Score: 82.8 bits (203), Expect = 3.690e-16
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NI  V QPAQSPDLN+ DLG    ++S  ++     ++ LVE V+  Y+ +N    + +W  L K   ++LKA GGN ++I H   K+ +  G LP  V++++EV   AVE
Sbjct:  370 GFNIQFVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPRDLEELVEKVKQSYDTFNPHVNKYIWVTLQKCMIKILKAEGGNKYKIPHLNKKRLENLGNLPDLVEVQKEVALEAVE 482

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: J3S7K7_BETVV (Mariner transposase n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=J3S7K7_BETVV)

HSP 1 Score: 82.8 bits (203), Expect = 3.720e-16
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAV 336
            G+ IN++ QPAQSPDLN+ DLGF   ++S   +    T+D L++ VE  Y  Y    +   W  L     ++LK  GGN+++  H   KK  R G LP +V+I  E+ +  V
Sbjct:  382 GFEINIICQPAQSPDLNILDLGFFKAIQSIQHQSFPKTVDELIKSVEDAYTVYEPRIINYTWIHLMYVMVEILKVKGGNNYKNPHNSKKKMDRLGLLPTTVEISEELVNDTV 493

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B791676 (uncharacterized protein LOC110709050 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B791676)

HSP 1 Score: 81.6 bits (200), Expect = 3.860e-16
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NI  V QPAQSPDLN+ DLG    ++S  ++     +D LVE V   YN +     + +W  L     ++LKA GGN ++I H   KK +  G LP  ++++R +   AVE
Sbjct:  173 GFNIEFVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPKNVDELVEKVIEYYNNFKPEVKKYIWVTLQSCMIKILKAKGGNKYKIPHMNKKKLENLGILPNQIEVDRSIVLEAVE 285

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B78FE80 (uncharacterized protein LOC110730731 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78FE80)

HSP 1 Score: 82.4 bits (202), Expect = 4.340e-16
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAVE 339
            G+NI +V QPAQSPDLN+ DLG    ++S  ++     +D LVE V   YN +     + +W  L +   ++LKA GGN ++I H   KK +  G LP  ++++R +   AVE
Sbjct:  290 GFNIEVVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPKNVDELVEKVIESYNNFKPEVNKYIWVTLQRCMIKILKAEGGNKYKIPHMNKKKPENLGILPNQIEVDRSIVVEAVE 402

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BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Match: UPI000B793B4C (uncharacterized protein LOC110731907 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B793B4C)

HSP 1 Score: 80.9 bits (198), Expect = 5.760e-16
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 1

Query:    1 GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMYNAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKSVKIEREVFDGAV 336
            G+NI +V QPAQSPDLN+ DLG    ++S  ++   +T+D L++ V + YNA+     + +W  L     +VL+  GGN+F   H + K+ ++ G LPK + + R++   AV
Sbjct:  152 GFNIQMVYQPAQSPDLNVLDLGLFKVIQSLQYQSFPTTLDDLIKEVTNAYNAFEVKANKYIWLTLQSVMIKVLEKQGGNNFSPLHMKKKRLEKLGVLPKHLHVPRQLIHDAV 263

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig59923.13652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI000B771AE9	2.080e-17	39.82	uncharacterized protein LOC110737253 n=1 Tax=Cheno...	[more]
UPI000B783BEB	4.160e-17	38.94	uncharacterized protein LOC110726018 n=2 Tax=Cheno...	[more]
UPI000B792961	1.670e-16	39.82	uncharacterized protein LOC110694345 n=1 Tax=Cheno...	[more]
UPI000B780C45	2.210e-16	38.05	uncharacterized protein LOC110728627 n=1 Tax=Cheno...	[more]
UPI000B781AA8	2.710e-16	37.17	uncharacterized protein LOC110734628 n=1 Tax=Cheno...	[more]
UPI000B77CF5C	3.690e-16	38.94	uncharacterized protein LOC110698865 n=1 Tax=Cheno...	[more]
J3S7K7_BETVV	3.720e-16	37.50	Mariner transposase n=2 Tax=Beta vulgaris subsp. v...	[more]
UPI000B791676	3.860e-16	38.05	uncharacterized protein LOC110709050 n=2 Tax=Cheno...	[more]
UPI000B78FE80	4.340e-16	38.05	uncharacterized protein LOC110730731 n=1 Tax=Cheno...	[more]
UPI000B793B4C	5.760e-16	36.61	uncharacterized protein LOC110731907 n=1 Tax=Cheno...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig59923	contig	H-paniculata_contig59923:160..501 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	85.1
Seed ortholog evalue	2.3e-14
Seed eggNOG ortholog	161934.XP_010666796.1
Hectar predicted targeting category	other localisation
EggNOG OGs	2CMKC@1,2QQNW@2759,37YIB@33090,3GP0P@35493
Best tax level	Streptophyta
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	342
Cds size	342
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930662.3229923-CDS-H-paniculata_contig59923:159..501	1622930662.3229923-CDS-H-paniculata_contig59923:159..501	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig59923 160..501 -
1691481394.828976-CDS-H-paniculata_contig59923:159..501	1691481394.828976-CDS-H-paniculata_contig59923:159..501	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig59923 160..501 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig59923.13652.1	prot_H-paniculata_contig59923.13652.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig59923 160..501 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig59923:160..501-
coding sequence from alignment at H-paniculata_contig59923:160..501-

protein sequence of mRNA_H-paniculata_contig59923.13652.1

>prot_H-paniculata_contig59923.13652.1 ID=prot_H-paniculata_contig59923.13652.1|Name=mRNA_H-paniculata_contig59923.13652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
GWNINLVTQPAQSPDLNMNDLGFCACLKSRVWRGRYSTIDGLVEGVESMY
NAYNAATVERVWQRLSKRYNQVLKALGGNDFEIQHTETKKRQRAGGLPKS
VKIEREVFDGAVE*

mRNA from alignment at H-paniculata_contig59923:160..501-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig59923.13652.1 ID=mRNA_H-paniculata_contig59923.13652.1|Name=mRNA_H-paniculata_contig59923.13652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig59923:160..501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGAACATCAATCTCGTAACTCAGCCTGCGCAGTCACCAGATCTCAA
CATGAACGATTTGGGGTTCTGTGCATGTCTGAAAAGTAGGGTTTGGAGGG
GGCGTTACAGTACGATAGACGGCCTTGTGGAGGGGGTGGAGAGCATGTAC
AATGCGTACAACGCGGCAACCGTAGAGAGGGTGTGGCAGAGGCTCTCTAA
GCGGTACAATCAGGTCTTGAAGGCGCTAGGAGGAAACGATTTCGAGATAC
AGCATACCGAAACCAAGAAAAGGCAGCGTGCGGGAGGTCTGCCAAAATCG
GTCAAAATTGAGCGAGAGGTTTTCGACGGGGCGGTAGAATGA

Coding sequence (CDS) from alignment at H-paniculata_contig59923:160..501-

>mRNA_H-paniculata_contig59923.13652.1 ID=mRNA_H-paniculata_contig59923.13652.1|Name=mRNA_H-paniculata_contig59923.13652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig59923:160..501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGAACATCAATCTCGTAACTCAGCCTGCGCAGTCACCAGATCTCAA
CATGAACGATTTGGGGTTCTGTGCATGTCTGAAAAGTAGGGTTTGGAGGG
GGCGTTACAGTACGATAGACGGCCTTGTGGAGGGGGTGGAGAGCATGTAC
AATGCGTACAACGCGGCAACCGTAGAGAGGGTGTGGCAGAGGCTCTCTAA
GCGGTACAATCAGGTCTTGAAGGCGCTAGGAGGAAACGATTTCGAGATAC
AGCATACCGAAACCAAGAAAAGGCAGCGTGCGGGAGGTCTGCCAAAATCG
GTCAAAATTGAGCGAGAGGTTTTCGACGGGGCGGTAGAATGAGGGTGGAA
CATCAATCTCGTAACTCAGCCTGCGCAGTCACCAGATCTCAACATGAACG
ATTTGGGGTTCTGTGCATGTCTGAAAAGTAGGGTTTGGAGGGGGCGTTAC
AGTACGATAGACGGCCTTGTGGAGGGGGTGGAGAGCATGTACAATGCGTA
CAACGCGGCAACCGTAGAGAGGGTGTGGCAGAGGCTCTCTAAGCGGTACA
ATCAGGTCTTGAAGGCGCTAGGAGGAAACGATTTCGAGATACAGCATACC
GAAACCAAGAAAAGGCAGCGTGCGGGAGGTCTGCCAAAATCGGTCAAAAT
TGAGCGAGAGGTTTTCGACGGGGCGGTAGAATGA