mRNA_H-paniculata_contig59904.13649.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.830e-10 Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQE 189
+K + +++FS+KTN+ G +V KAR+VA G +QI GID+ F+ PSAA++KTV+AVA ++
Sbjct: 150 RKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEK 212
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A8H6YF94_9AGAR (Integrase catalytic domain-containing protein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6YF94_9AGAR) HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10 Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 4 KPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQEDLQ 198
KP+R Q++F K G++ + KARLVADGR Q GIDY+E F+PT A ++T+LA++ Q +L+
Sbjct: 742 KPIRSQWVFVIKHKSDGSIERYKARLVADGRRQRHGIDYNEVFSPTFKPATLRTILALSAQHNLK 806
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5KQV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV1_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 2.910e-10 Identity = 28/63 (44.44%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQE 189
+K + +++F++KTN+ G +V KAR+VA G +QI GID+ + PSAA++KTV+AVA ++
Sbjct: 24 RKAIGSKWMFAWKTNETGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 86
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A5E4GEJ7_PRUDU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GEJ7_PRUDU) HSP 1 Score: 60.1 bits (144), Expect = 4.330e-10 Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 19 QFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVA 180
+++F KT++ GNVV+ KARLVA G TQ++GID+DE FAP +V+ +LA+A
Sbjct: 2 KWIFKNKTDEQGNVVRNKARLVAQGYTQMEGIDFDETFAPVARLESVRLLLAIA 55
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: UPI00090118BB (uncharacterized protein LOC109163335 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090118BB) HSP 1 Score: 60.5 bits (145), Expect = 4.640e-10 Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 19 QFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVA 180
+++F KT++ GN+ + KARLVA G TQI+GIDYDE FAP +++ +LAVA
Sbjct: 70 KWIFKNKTDEAGNIARNKARLVAQGYTQIEGIDYDETFAPVARLESIRILLAVA 123
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 7.740e-10 Identity = 28/63 (44.44%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQE 189
+K + +++FS+KTN+ G +V KAR+VA G ++I GID+ + +PSAA++KTV+AVA ++
Sbjct: 42 RKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEK 104
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: F2UPM9_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPM9_SALR5) HSP 1 Score: 62.4 bits (150), Expect = 9.180e-10 Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 4 KPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAV 183
K LR +F K +D G V+K KAR VA G +Q+QG++Y + FAPT + AA++T+LA+AV
Sbjct: 803 KLLRSMVIFRKKRDDQGKVIKYKARWVAKGYSQVQGVNYTDTFAPTATIAAIRTMLAMAV 862
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A8J4AXG8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXG8_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 9.190e-10 Identity = 26/65 (40.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 4 KPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQEDLQ 198
+PL +++++ K ++ G++++ KARLVA G TQ++G+DYDE +AP A ++ +LAV + DL+
Sbjct: 1032 RPLAVKWVYTVKRDEQGDILRYKARLVAKGYTQVEGVDYDEVYAPVSKHATLRALLAVVAERDLE 1096
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.230e-9 Identity = 28/62 (45.16%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 1 KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVAVQ 186
+K + +++FS+KTN+ G +V K+R++A G +QI GID+ F+ PSAA++KTV+AVA +
Sbjct: 24 RKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATE 85
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Match: UPI000CED754C (uncharacterized protein LOC112097851 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED754C) HSP 1 Score: 61.6 bits (148), Expect = 1.700e-9 Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 19 QFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAAAVKTVLAVA 180
+++F KTN+ GN+V+ KARLVA G TQI+G+D+DE FAP +++ + AVA
Sbjct: 788 KWIFKNKTNEFGNIVRNKARLVAQGYTQIEGVDFDETFAPVARIESIRLIFAVA 841 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59904.13649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59904.13649.1 >prot_H-paniculata_contig59904.13649.1 ID=prot_H-paniculata_contig59904.13649.1|Name=mRNA_H-paniculata_contig59904.13649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp KKPLRGQFLFSYKTNDMGNVVKVKARLVADGRTQIQGIDYDEGFAPTPSAback to top mRNA from alignment at H-paniculata_contig59904:2..199- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig59904.13649.1 ID=mRNA_H-paniculata_contig59904.13649.1|Name=mRNA_H-paniculata_contig59904.13649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig59904:2..199- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig59904:2..199- >mRNA_H-paniculata_contig59904.13649.1 ID=mRNA_H-paniculata_contig59904.13649.1|Name=mRNA_H-paniculata_contig59904.13649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig59904:2..199- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |