mRNA_H-paniculata_contig599.13647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig599.13647.1 vs. uniprot
Match: D8LKH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH5_ECTSI) HSP 1 Score: 202 bits (513), Expect = 1.980e-55 Identity = 118/254 (46.46%), Postives = 151/254 (59.45%), Query Frame = 3
Query: 1365 MLREVIKVLTDPASPGVGGNPNEPLLLVQKLALDETDAIFGAFESSYRRHATDAGGWSPEPGGFNRWLDTYHHAVLRKTRPVIVTVHGDDVCALELEISREARMAAAEAAGESTGHTNTDGPGGGENFDVPLVLVTLGWDPSGDPTHAEPALGRDSSCVRRVLQLPRVLKWFTSHTRYDSEVNEKFKYIPIGFGGYETRNGLPQTAYLDAAKKQLEIL-ETCPLDQAGNLDLL--FQGNTLERNPRAKIWHEMT 2117
MLR+V+KVLTDP S G+GG P+EPLLLVQKLALDETDAIFGAFE + +A DAG WSP PGGF+RWL YH L +RPV+ TVHGDDVCALE E+ R+ + E+ G T D ++ ++ +P P A R ++ R + +P R ETR+GLP TAY+DAA++Q E+L ETCP+D+AG+ L FQGNTL+R+PR KIW +MT
Sbjct: 1 MLRQVVKVLTDPTSAGLGGRPDEPLLLVQKLALDETDAIFGAFEPRFLGYAADAGSWSPLPGGFSRWLARYHRVALHGSRPVLATVHGDDVCALEKELYLGVRVPS-----EAGGVTPND------------IIDSIAEEP---PASASAGFRRQATNERGKVSIP------ADRVR-------------------ETRSGLPHTAYIDAARRQPEVLIETCPIDRAGSQLRLAVFQGNTLDRDPRTKIWKQMT 209
BLAST of mRNA_H-paniculata_contig599.13647.1 vs. uniprot
Match: A0A820GX94_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A820GX94_9BILA) HSP 1 Score: 55.5 bits (132), Expect = 8.330e-5 Identity = 52/190 (27.37%), Postives = 79/190 (41.58%), Query Frame = 3
Query: 1740 ENFDVPLVLVTLGWDPSGDPTHAEPALGRDSSCVRRVLQLPRVLKWFTSHTRYDSEVNEKFKYIPIGFGGYETRNGLPQTAYLDAAKKQLEILETCPLDQAGNLDLLFQGNTLERNP--RAKIWHEMTEKDSGPIPVNRAPLDAPDMLQAYARGIFAVSPPGTGADCFRHYELMLMGAITFV--QDRDPL 2297
++ P VLVT D S S R+ L P++L W+ S+ + ++K IPIG +G D AK L + LL+ + N R K + ++++ ++ I R + LQ F +SPPGTG DC R +E +LMGA+ V + DPL
Sbjct: 11 KSIQEPFVLVTHNSDKSAP------------SKYRKNLLHPKILIWYASNPSI--KCHQKLSPIPIGLANAHWTHG-------DLAKLTYA-LRNHRKSWSQRTSLLYVNFAIRTNKAQRKKAFLQVSKIENAQIVEERVTFET--YLQQIGNAKFVLSPPGTGLDCHRTWEALLMGAVPIVLTSELDPL 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig599.13647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig599.13647.1 >prot_H-paniculata_contig599.13647.1 ID=prot_H-paniculata_contig599.13647.1|Name=mRNA_H-paniculata_contig599.13647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1008bp MVPSVYGCWRNDTREQTACGGRDGQRGSDTVVNEAGEDNSCLSNVMPPRRback to top mRNA from alignment at H-paniculata_contig599:9321..28996- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig599.13647.1 ID=mRNA_H-paniculata_contig599.13647.1|Name=mRNA_H-paniculata_contig599.13647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=19676bp|location=Sequence derived from alignment at H-paniculata_contig599:9321..28996- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig599:9321..28996- >mRNA_H-paniculata_contig599.13647.1 ID=mRNA_H-paniculata_contig599.13647.1|Name=mRNA_H-paniculata_contig599.13647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6048bp|location=Sequence derived from alignment at H-paniculata_contig599:9321..28996- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |