mRNA_H-paniculata_contig59879.13646.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5J8Q9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q9_9PHAE) HSP 1 Score: 146 bits (368), Expect = 3.330e-39 Identity = 84/181 (46.41%), Postives = 113/181 (62.43%), Query Frame = 1
Query: 55 PKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQ-EIGEVSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCVY 594
PK+ S+ +H+W ++M+ E GL T+ P + E+ I++KW+F WK DE G KVK+RLV RGD Q E VS + + AALAC + HFD+EQAFV+S+L++ VYMRLPQG G SG IV+L ++LYGLRQA+R+W L R L A GFEQ +AD CV+
Sbjct: 118 PKSYKEAMPSEHRHLWSDSMQREFYGLLEAGTFFPAKEQL-AENAINAKWVFDWKADEFGCPTKVKSRLVARGDMQREYRSVSCVT---------MLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWRAMLKRCLVALGFEQCMADACVF 288
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.200e-38 Identity = 84/186 (45.16%), Postives = 116/186 (62.37%), Query Frame = 1
Query: 40 EVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIG--EVSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+V P P + QS+ VW AM E +GL T+S + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A + R+ ALAC ++ H D+EQAFVQ+ L AV+M+LP G G SG +VRL ++LYGL+QA+R ++ +L L GFEQSL+DPCV
Sbjct: 162 DVQPEPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCV 347
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 150 bits (378), Expect = 2.250e-38 Identity = 81/186 (43.55%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 40 EVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIGE--VSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+V+P P + +S+ +W +AM E++GL T++ + + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A + R+ ALAC ++ H D+EQAFVQS L V+M+LP G SG IVRL ++LYGL+QA+R ++ +L L GFEQSL+DPCV
Sbjct: 413 DVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCV 598
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 150 bits (378), Expect = 2.310e-38 Identity = 81/186 (43.55%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 40 EVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIGE--VSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+V+P P + +S+ +W +AM E++GL T++ + + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A + R+ ALAC ++ H D+EQAFVQS L V+M+LP G SG IVRL ++LYGL+QA+R ++ +L L GFEQSL+DPCV
Sbjct: 477 DVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCV 662
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 150 bits (378), Expect = 2.320e-38 Identity = 81/186 (43.55%), Postives = 118/186 (63.44%), Query Frame = 1
Query: 40 EVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIGE--VSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+V+P P + +S+ +W +AM E++GL T++ + + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A + R+ ALAC ++ H D+EQAFVQS L V+M+LP G SG IVRL ++LYGL+QA+R ++ +L L GFEQSL+DPCV
Sbjct: 621 DVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCV 806
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 149 bits (377), Expect = 3.130e-38 Identity = 79/186 (42.47%), Postives = 119/186 (63.98%), Query Frame = 1
Query: 40 EVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIGE--VSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+V+ P + +S+ +W AM E++GL T++ + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A ++R+ ALAC ++ H+D+EQAFVQS+L V+M+LP G G SG +VRL ++LYGL+QA+R ++ +L L GFEQS++DPCV
Sbjct: 443 DVESVPDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCV 628
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 149 bits (375), Expect = 6.090e-38 Identity = 79/186 (42.47%), Postives = 119/186 (63.98%), Query Frame = 1
Query: 40 EVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIGE--VSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+V+ P + +S+ +W AM E++GL T++ + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A ++R+ ALAC ++ H+D+EQAFVQS+L V+M+LP G G SG +VRL ++LYGL+QA+R ++ +L L GFEQS++DPCV
Sbjct: 710 DVESVPDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCV 895
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.580e-37 Identity = 82/197 (41.62%), Postives = 121/197 (61.42%), Query Frame = 1
Query: 7 NLLPIPYVKQDEVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIGE--VSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+ + +P +V+ P + QS+ +W AM E++GL T++ + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A + R+ ALAC ++ H+D+EQAFVQS L V+M+LP G G SG +VRL ++LYGL+QA+R ++ +L L GFEQSL+DPCV
Sbjct: 764 DAVELPKELVQDVESEPGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCV 960
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.490e-37 Identity = 80/186 (43.01%), Postives = 116/186 (62.37%), Query Frame = 1
Query: 40 EVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQEIGE--VSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCV 591
+V+P P + +S+ +W +AM E++GL T++ + + + ID++W+F+WK DE G +VK KARLV +G Q+ G + FSPTA A + R+ ALAC ++ H D+EQAF QS L V M+LP G SG IVRL ++LYGL+QA+R ++ +L L GFEQSL+DPCV
Sbjct: 208 DVEPEPGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCV 393
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Match: A0A6H5JKF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF2_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.670e-37 Identity = 86/184 (46.74%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 55 PKTVNHVFQSQCKHVWLEAMKVEIDGLEANETWSPVDDLSDEESPIDSKWIFQWKTDEHGYVVKVKARLVFRGDNQ----EIGEVSAFSPTAPATTNRVAAALACARGRKIFHFDVEQAFVQSDLKDAVYMRLPQGLGKGSGTIVRLRETLYGLRQAAREWFTKLARTLGAPGFEQSLADPCVY 594
PKT+ +SQ +W +A+ E GL T+SPV E+ I +KW+F K DE+G K KARLV RGD Q + GE+ F+PT ++ R+ AALAC + + HFD++QAFVQS+L + V+MRLPQG G+ SG IV+L ++LYGL+QA+R W + L R L GF Q LAD CV+
Sbjct: 353 PKTLKESMRSQHSELWDDAVGREFFGLLDAGTFSPV--KQPVENAIIAKWVFNCKADEYGRPTKFKARLVARGDMQRASIDFGEL--FAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVF 532 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59879.13646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59879.13646.1 >prot_H-paniculata_contig59879.13646.1 ID=prot_H-paniculata_contig59879.13646.1|Name=mRNA_H-paniculata_contig59879.13646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp KPNLLPIPYVKQDEVDPPPKTVNHVFQSQCKHVWLEAMKVEIDGLEANETback to top mRNA from alignment at H-paniculata_contig59879:322..915- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig59879.13646.1 ID=mRNA_H-paniculata_contig59879.13646.1|Name=mRNA_H-paniculata_contig59879.13646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig59879:322..915- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig59879:322..915- >mRNA_H-paniculata_contig59879.13646.1 ID=mRNA_H-paniculata_contig59879.13646.1|Name=mRNA_H-paniculata_contig59879.13646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig59879:322..915- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |